HHsearch alignment for GI: 254781172 and conserved domain: PRK05972
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed.
Probab=97.33 E-value=0.011 Score=39.84 Aligned_cols=161 Identities=23% Similarity=0.251 Sum_probs=91.9
Q ss_pred CCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEE----CHHH
Q ss_conf 776119999415818999998599899888659865566699977531024322335445504899999985----2021
Q gi|254781172|r 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS----KNDF 198 (731)
Q Consensus 123 ~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~----~~~F 198 (731)
T Consensus 216 P~g~~W~~EiK~DGyR~la~i~~g~-v~L~SR----nG~D~T~~fPel~~a~~~l~~---~~avLDGEIVald~~Grp~F 287 (832)
T PRK05972 216 PSGDGWIYEIKFDGYRILARIEGGE-VRLFTR----NGLDWTAKLPALAKAAAALGL---PDAWLDGEIVVLDENGVPDF 287 (832)
T ss_pred CCCCCEEEEEEECEEEEEEEEECCE-EEEEEC----CCCCCHHHHHHHHHHHHHCCC---CCEEEEEEEEEECCCCCCCH
T ss_conf 9999725886554288999980998-899816----998534455999999984688---76356206998679998798
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCC--CCHHHHHHHHHCCCCC-CCCEEEE
Q ss_conf 234556431485433423456777752345555301110566410245433210--0003689999759966-5414887
Q gi|254781172|r 199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--GQYEMLQKMRCLGFPV-NNGVRQA 275 (731)
Q Consensus 199 ~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~~--~~~e~l~~L~~~GF~v-~~~~~~~ 275 (731)
T Consensus 288 ~~LQ~~~---------------~--------~~~~~~l~y~~FDLL~ldG~dL~~~Pl~eRk~~L~~Ll~~~~~~~ir~s 344 (832)
T PRK05972 288 QALQNAF---------------D--------EGRTEDLVYFAFDLPFLEGEDLRALPLEERRARLRALLEAARSDRLRFS 344 (832)
T ss_pred HHHHHHH---------------H--------CCCCCCEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 9999887---------------4--------4787753899962103388510007899999999987502689837637
Q ss_pred ECCC-CHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCE
Q ss_conf 4032-1134556655310011234376377731100011158765686631
Q gi|254781172|r 276 NTFH-GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM 325 (731)
Q Consensus 276 ~~~~-~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~Prwa 325 (731)
T Consensus 345 ~~~~~~g~~~~~~a~~------~glEGIVaKr~dS~Y~--~---gRS~~Wl 384 (832)
T PRK05972 345 EHFDAGGDAVLASACR------LGLEGVIGKRADSPYV--S---GRSEDWI 384 (832)
T ss_pred CCCCCCHHHHHHHHHH------CCCCCEEEECCCCCCC--C---CCCHHHH
T ss_conf 5405799999999987------1885326513788656--8---8864334