HHsearch alignment for GI: 254781172 and conserved domain: PRK05972

>PRK05972 ligD ATP-dependent DNA ligase; Reviewed.
Probab=97.33  E-value=0.011  Score=39.84  Aligned_cols=161  Identities=23%  Similarity=0.251  Sum_probs=91.9

Q ss_pred             CCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEE----CHHH
Q ss_conf             776119999415818999998599899888659865566699977531024322335445504899999985----2021
Q gi|254781172|r  123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYIS----KNDF  198 (731)
Q Consensus       123 ~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~----~~~F  198 (731)
T Consensus       216 P~g~~W~~EiK~DGyR~la~i~~g~-v~L~SR----nG~D~T~~fPel~~a~~~l~~---~~avLDGEIVald~~Grp~F  287 (832)
T PRK05972        216 PSGDGWIYEIKFDGYRILARIEGGE-VRLFTR----NGLDWTAKLPALAKAAAALGL---PDAWLDGEIVVLDENGVPDF  287 (832)
T ss_pred             CCCCCEEEEEEECEEEEEEEEECCE-EEEEEC----CCCCCHHHHHHHHHHHHHCCC---CCEEEEEEEEEECCCCCCCH
T ss_conf             9999725886554288999980998-899816----998534455999999984688---76356206998679998798


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCC--CCHHHHHHHHHCCCCC-CCCEEEE
Q ss_conf             234556431485433423456777752345555301110566410245433210--0003689999759966-5414887
Q gi|254781172|r  199 LALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAK--GQYEMLQKMRCLGFPV-NNGVRQA  275 (731)
Q Consensus       199 ~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~~--~~~e~l~~L~~~GF~v-~~~~~~~  275 (731)
T Consensus       288 ~~LQ~~~---------------~--------~~~~~~l~y~~FDLL~ldG~dL~~~Pl~eRk~~L~~Ll~~~~~~~ir~s  344 (832)
T PRK05972        288 QALQNAF---------------D--------EGRTEDLVYFAFDLPFLEGEDLRALPLEERRARLRALLEAARSDRLRFS  344 (832)
T ss_pred             HHHHHHH---------------H--------CCCCCCEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCEECC
T ss_conf             9999887---------------4--------4787753899962103388510007899999999987502689837637


Q ss_pred             ECCC-CHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCE
Q ss_conf             4032-1134556655310011234376377731100011158765686631
Q gi|254781172|r  276 NTFH-GIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWM  325 (731)
Q Consensus       276 ~~~~-~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~Prwa  325 (731)
T Consensus       345 ~~~~~~g~~~~~~a~~------~glEGIVaKr~dS~Y~--~---gRS~~Wl  384 (832)
T PRK05972        345 EHFDAGGDAVLASACR------LGLEGVIGKRADSPYV--S---GRSEDWI  384 (832)
T ss_pred             CCCCCCHHHHHHHHHH------CCCCCEEEECCCCCCC--C---CCCHHHH
T ss_conf             5405799999999987------1885326513788656--8---8864334