HHsearch alignment for GI: 254781172 and conserved domain: PRK08097
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed.
Probab=100.00 E-value=0 Score=1232.11 Aligned_cols=535 Identities=23% Similarity=0.389 Sum_probs=482.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 46889999999999999999999984331779820878999999999999897720311589999620036432357750
Q gi|254781172|r 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFK 88 (731)
Q Consensus 9 ~~~~s~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~~~~~~~p~spt~~Vg~~~~~~~~k 88 (731)
T Consensus 23 ~~~~~p~~ak~~I~~Lr~~i~~hn~~YY~~d~P~IsD~eYD~L~~eL~~LE~~~p~~~---~~~SPt~~vgg-------k 92 (563)
T PRK08097 23 CPDWSPARAQEEISALQQQLAQWDDAYWRQGKSPVDDEVYDQLRARLTQWQRCFGLPV---PRDPPLPPANG-------P 92 (563)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCC-------C
T ss_conf 9698989999999999999999999875289997888999999999999998686767---99999789998-------5
Q ss_pred EECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 45166425702159999999999999986124677761199994158189999985998998886598655666999775
Q gi|254781172|r 89 VTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIR 168 (731)
Q Consensus 89 v~H~~pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~ 168 (731)
T Consensus 93 v~H~~pMlSL~n~~~~~el~~~~~~~-----------~~~~vEpKiDGlaisL~YenG~Lv~A~TRGDG~~GEDVT~Nv~ 161 (563)
T PRK08097 93 VMHPVAHTGVRKLADKQALARWMRGR-----------SDLWVQPKVDGVAVTLVYRDGKLVQAISRGNGLKGEDWTAKAR 161 (563)
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHCC-----------CCCEEEEECCCEEEEEEEECCEEEEEECCCCCCCCEEHHHHHH
T ss_conf 25898764711118989999998413-----------0617622056468999998998988871379976504888777
Q ss_pred HHCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCC
Q ss_conf 31024322335445504899999985202123455643148543342345677775234555530111056641024543
Q gi|254781172|r 169 AIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSE 248 (731)
Q Consensus 169 ~i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~ 248 (731)
T Consensus 162 tI~~IP~~L~~~-p~~levRGEv~~~~~~~~~~--------~~~~aNPRNaAAGsLr~~~~~~~~~~l~~f~y~~~~--- 229 (563)
T PRK08097 162 LIPAIPQTLPGA-PANLVLQGELFLRREGHIQA--------QMGGINARSKVAGLMMRKDLSPALNSIGLFVWAWPD--- 229 (563)
T ss_pred HHCCCCHHHCCC-CCEEEEEEEEEEECCHHHHH--------HCCCCCCCHHHHHHHHHCCCHHHHHCCCEEEEECCC---
T ss_conf 770603221799-96479977999861458887--------437889734552045523848777416779994588---
Q ss_pred CCCCCCHHHHHHHHHCCCCCCC-CEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEE
Q ss_conf 3210000368999975996654-148874032113455665531001123437637773110001115876568663123
Q gi|254781172|r 249 IFAKGQYEMLQKMRCLGFPVNN-GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMIS 327 (731)
Q Consensus 249 ~~~~~~~e~l~~L~~~GF~v~~-~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA 327 (731)
T Consensus 230 -g~~~~~e~l~~L~~~GF~v~~~~~~~~~~~~ev~~~~~~~--~R~~L~y~iDGiViK~~~~~~~~~--~tsk~PRWAIA 304 (563)
T PRK08097 230 -GPATMPERLAQLATAGFPLTQKYSHAVKNADEVARWRQHW--YRSPLPFVTDGVVVRQAKEPPGRR--WQPGQGEWLVA 304 (563)
T ss_pred -CCCCHHHHHHHHHHCCCCCCHHHCEECCCHHHHHHHHHHH--HHCCCCCCCCEEEEEECCHHHHHH--HCCCCCCCEEE
T ss_conf -9779999999999779998856612048899999999997--533588777538998356888875--25689873146
Q ss_pred ECCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 11456215899878899403562258999974333026400010148989997502345432224684407689998358
Q gi|254781172|r 328 HKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAG 407 (731)
Q Consensus 328 ~Kf~~e~~~T~v~~I~wqvgRtG~itPva~~ePV~l~G~~V~ratlhN~~~I~~l~~~~~~~~~~~~I~iGd~V~I~RaG 407 (731)
T Consensus 305 yKF~ae~~~T~l~~I~~qVGRTG~iTPVA~lePV~l~G~tVsrATLHN~d~I~r-----------~diriGD~V~V~rAG 373 (563)
T PRK08097 305 WKYPPVQQVAEVRAIQFAVGRTGKITVVLSLAPVMLDDKRVQRVNIGSVRRWQQ-----------WDIAPGDQILVSLAG 373 (563)
T ss_pred ECCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECCEEEEECCCCCHHHHHH-----------CCCCCCCEEEEEECC
T ss_conf 657510307999888998667511325899887887789998403578889987-----------499989999999678
Q ss_pred CCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 702566541012357873047770432657750103378654452101003--543441144665533213012310354
Q gi|254781172|r 408 EVIPKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRC--TGGLACSAQQLERLKHFVSRDAFNIEG 485 (731)
Q Consensus 408 dVIP~I~~Vi~~~r~~~~~~~~~P~~CP~Cgs~l~~~~~~~~~~~~~~~rC--~n~~~Cpaq~~~~i~hF~SK~aldI~G 485 (731)
T Consensus 374 dVIP~V~~Vv~--r~~~~~~~~~P~~~~~-----------------~~~~C~~~~~-~C~aq~~~rl~hF~Sr~amdI~G 433 (563)
T PRK08097 374 QGIPRLDEVVW--RGAERAKPTPPDADRF-----------------HSLSCFQASP-GCQEQFIARLVWLGGKQGLGLDG 433 (563)
T ss_pred CCCCCCCEECC--CCCCCCCCCCCCCCCC-----------------CCCEECCCCC-CCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 86787044126--6778899889987788-----------------8852178999-99799999978600234158567
Q ss_pred HHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 10355556530576540454101101067775310001000134210014568999987522346667763010111168
Q gi|254781172|r 486 LGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAE 565 (731)
Q Consensus 486 LG~k~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~ 565 (731)
T Consensus 434 LGek~i~~L~~~----gli~~~~Dly~L~~~------~L~~l~g~geKsa~nLl~aIe~SK~~~l~r~l~aLGI~~vG~~ 503 (563)
T PRK08097 434 IGEGTWRALHQT----GRFEHLFSWLALTPE------QLANTPGIGKARAAQLWHQFNLARQQPFTRWLKALGIPLTQAA 503 (563)
T ss_pred CCHHHHHHHHHC----CCCCCHHHHHHCCHH------HHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHH
T ss_conf 699999999975----888997997508999------9855898578999999999999728999999998699508999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999998829989999978977612511778761388867899999999966979999999999733877
Q gi|254781172|r 566 IARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPS 635 (731)
Q Consensus 566 ~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ff~~~~n~~~i~~L~~~~~~~ 635 (731)
T Consensus 504 ~a~~l~~~~---~~L~----------~as~e~l~~i~gIG~~~A~si~~fF~~~~n~~li~~L~~~Gvn~ 560 (563)
T PRK08097 504 LNASLDRSW---QQLL----------SRTEQQWQQLPGIGEGRARQLIAFFDHPQVQALAEWLAAQGITG 560 (563)
T ss_pred HHHHHHCCH---HHHH----------CCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 999986199---9997----------39998995579848999999999985988999999999769998