HHsearch alignment for GI: 254781172 and conserved domain: PRK08224
>PRK08224 ligC ATP-dependent DNA ligase; Reviewed.
Probab=97.68 E-value=0.0015 Score=46.69 Aligned_cols=217 Identities=17% Similarity=0.194 Sum_probs=104.7
Q ss_pred CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECH---HHHH
Q ss_conf 7611999941581899999859989988865986556669997753102432233544550489999998520---2123
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN---DFLA 200 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~---~F~~ 200 (731)
T Consensus 22 ~~~~w~~E~K~DG~R~~~~~~~~~-v~L~SR----~g~d~T~~fPel~~~~~~~---~~~~~VLDGEiV~~~~~~~~F~~ 93 (345)
T PRK08224 22 PGGGWSYEPKWDGFRCLVFRDGDE-VELGSR----NGKPLTRYFPELVAALRAE---LPERCVLDGEIVIATDGGLDFEA 93 (345)
T ss_pred CCCCEEEEEEECCEEEEEEEECCE-EEEECC----CCCCCHHHCHHHHHHHHHC---CCCCEEEEEEEEECCCCCCCHHH
T ss_conf 999758996277099999998999-999938----9752034578999999752---78657985069960699789899
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHCCCCCCCCEEEE---
Q ss_conf 455643148543342345677775234555530111056641024543321--000036899997599665414887---
Q gi|254781172|r 201 LNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQA--- 275 (731)
Q Consensus 201 lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~--~~~~e~l~~L~~~GF~v~~~~~~~--- 275 (731)
T Consensus 94 Lq~R~---------~~---~~~r~~~l---~~~~Pv~~~~FDlL~l~G~dL~~~Pl~eRr~~L~~ll~~~~~~~~~~~~~ 158 (345)
T PRK08224 94 LQQRI---------HP---AASRVRKL---AEETPASFVAFDLLALGDEDLTGRPFAERRAALEAALAGAGPPVHLTPAT 158 (345)
T ss_pred HHHHC---------CC---CCCHHHHH---HHHCCCEEEEEEEEEECCEEHHHCCHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 96452---------22---33137776---43078479999775599637454879999999998752479857974520
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECCCC-CEEEEEEEEEEEEECCCCEE--
Q ss_conf 403211345566553100112343763777311000111587656866312311456-21589987889940356225--
Q gi|254781172|r 276 NTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE-KQASTRLLDIDIQIGRTGIL-- 352 (731)
Q Consensus 276 ~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf~~-e~~~T~v~~I~wqvgRtG~i-- 352 (731)
T Consensus 159 ~~~~~~~~~~~~a~~------~G~EGIvaKr~dS~Y~~--Gr--R--~w---lKiK~~~~~d~VI~G~--~~~~~~~~~g 221 (345)
T PRK08224 159 TDLATARRWFEEFEG------AGLDGVIAKPLDGPYQP--GK--R--VM---FKVKHERTADCVVAGF--RYHKSGDAVG 221 (345)
T ss_pred CCHHHHHHHHHHHHH------CCCCEEEEECCCCCCCC--CC--C--CC---EEECCCCEEEEEEEEE--ECCCCCCCCC
T ss_conf 788899999999997------69932798669997678--98--6--66---7963446031999956--7489877544
Q ss_pred -EEEEEEEEE-EECCCEEEEECCCCHHHHHHH
Q ss_conf -899997433-302640001014898999750
Q gi|254781172|r 353 -TPVARLEPV-NIGGALITNATLHNEDYIKGL 382 (731)
Q Consensus 353 -tPva~~ePV-~l~G~~V~ratlhN~~~I~~l 382 (731)
T Consensus 222 slllG~y~~~g~l--~~vGv~tgf~~~~~~~L 251 (345)
T PRK08224 222 SLLLGLYDDDGLL--HHVGVTSAFPMAERRAL 251 (345)
T ss_pred CEEEEEECCCCCE--EEEEEECCCCHHHHHHH
T ss_conf 0789998599758--99753068798999999