HHsearch alignment for GI: 254781172 and conserved domain: PRK09247
>PRK09247 ATP-dependent DNA ligase; Validated.
Probab=97.89 E-value=0.00087 Score=48.46 Aligned_cols=218 Identities=14% Similarity=0.095 Sum_probs=116.7
Q ss_pred CEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECH----HHHHH
Q ss_conf 11999941581899999859989988865986556669997753102432233544550489999998520----21234
Q gi|254781172|r 126 IFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN----DFLAL 201 (731)
Q Consensus 126 ~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~----~F~~l 201 (731)
T Consensus 225 ~~~~~E~K~DG~R~Qih~~~~~-v~l~SR----~~e~it~~fPei~~~---~-~~~~~~~ilDGEiv~~~~~~~~~F~~l 295 (537)
T PRK09247 225 ADWQAEWKWDGIRVQLVRRGGE-VRLWSR----GEELITERFPELVEA---A-EALPDGTVLDGELLVWRPGRVQPFAAL 295 (537)
T ss_pred HCCEEEECCCCEEEEEEEECCE-EEEEEC----CCCCCHHHHHHHHHH---H-HHCCCCEEEEEEEEEECCCCCCCHHHH
T ss_conf 0065461148268999995999-999937----986031242889999---9-838988478768997359986888999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHCCCHH--HH-HCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCC-CCE---
Q ss_conf 55643148543342345677775234555--53-011105664102454332--1000036899997599665-414---
Q gi|254781172|r 202 NDEMIAVGRKPYANPRNAASGILRRLNPT--DI-TRYLNFFVHGLGKTSEIF--AKGQYEMLQKMRCLGFPVN-NGV--- 272 (731)
Q Consensus 202 N~~~~~~g~~~f~NpRN~aaG~lr~~d~~--~~-~r~L~f~ay~~~~~~~~~--~~~~~e~l~~L~~~GF~v~-~~~--- 272 (731)
T Consensus 296 -------------------q~Rl~rk~~~~~~~~~~Pv~~~~FDlL~~~G~dl~~~pl~eRR~~L~~~~~~~~~~~~~~s 356 (537)
T PRK09247 296 -------------------QQRIGRKTVGKKLLAEYPAFLRAYDLLEDGGEDLRELPLAERRARLEALIARLPDPRLDLS 356 (537)
T ss_pred -------------------HHHHCCCCCCHHHHHCCCEEEEEEEHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf -------------------8774236753767514886999862044278614438899999999998733689849960
Q ss_pred --EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEEC-CC
Q ss_conf --887403211345566553100112343763777311000111587656866312311456215899878899403-56
Q gi|254781172|r 273 --RQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIG-RT 349 (731)
Q Consensus 273 --~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf~~e~~~T~v~~I~wqvg-Rt 349 (731)
T Consensus 357 ~~~~~~~~~e~~~~~~~------a~~~g~EGlm~K~~ds~Y~p--G--rR~~~W-~K~K~d~~tlDlVviga~~G~GrR~ 425 (537)
T PRK09247 357 PLVPFSDWDELAALRAA------ARERGVEGLMLKRRDSPYLV--G--RKKGDW-WKWKRDPLTIDAVLIYAQRGHGRRA 425 (537)
T ss_pred CCCCCCCHHHHHHHHHH------HHHCCCEEEEEECCCCCCCC--C--CCCCCE-EEECCCCCCCEEEEEECCCCCCCCC
T ss_conf 51406999999999998------87538704798458998679--9--878974-7880575310048972245876645
Q ss_pred CEEEE--EEEEEEEEECCC--EEEE-ECCCCHHHHHHH
Q ss_conf 22589--999743330264--0001-014898999750
Q gi|254781172|r 350 GILTP--VARLEPVNIGGA--LITN-ATLHNEDYIKGL 382 (731)
Q Consensus 350 G~itP--va~~ePV~l~G~--~V~r-atlhN~~~I~~l 382 (731)
T Consensus 426 ~~~~~~~la~~~~~~~~~~l~~v~K~~sG~td~el~~l 463 (537)
T PRK09247 426 SLYTDYTFGVWDGGEGGRQLVPFAKAYSGLTDEEILQL 463 (537)
T ss_pred CCCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHH
T ss_conf 54244579998079986168887886478999999999