HHsearch alignment for GI: 254781172 and conserved domain: PRK09633
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed.
Probab=97.99 E-value=0.00055 Score=49.97 Aligned_cols=195 Identities=15% Similarity=0.200 Sum_probs=103.1
Q ss_pred CCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEEE----
Q ss_conf 7761199994158189999985998998886598655666999775310243223----35445504899999985----
Q gi|254781172|r 123 DNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVL----SLNIPEIIEVRGEVYIS---- 194 (731)
Q Consensus 123 ~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l----~~~~~~~ieiRGEv~m~---- 194 (731)
T Consensus 10 P~G~dWiyEiK~DG~R~la~~~~~~-VrL~SR----ng~d~T~~fPEl~~a~~~l~~~~~~~lp--~VLDGEiVald~~g 82 (604)
T PRK09633 10 PTGDEWRYEVKYDGFRCLLIIDETG-ITLISR----NGRNLNNQFPEIIEFCEQIREHLKAELP--LTFDGELVCLLNPY 82 (604)
T ss_pred CCCCCEEEEEEECEEEEEEEEECCE-EEEEEC----CCCCCHHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEEECCCC
T ss_conf 6999666874266068999998999-999928----9987376759999999975542102467--34764799888999
Q ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCC-----CCCCHHHHHHH-HHCCCCC
Q ss_conf 20212345564314854334234567777523455553011105664102454332-----10000368999-9759966
Q gi|254781172|r 195 KNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF-----AKGQYEMLQKM-RCLGFPV 268 (731)
Q Consensus 195 ~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~-----~~~~~e~l~~L-~~~GF~v 268 (731)
T Consensus 83 ~p~F~~LQ~R~~------~~~~~~i~~--------~~~~~Pv~y~vFDLL~LdG~dL~~lPL~eRK~~L~~ll~~~~~p~ 148 (604)
T PRK09633 83 RSDFAHVQTRGR------LKNTEVIAK--------SANKRPCQLLAFDLLVLKGESLTSLPYTERKKQLFQLMKAAKLPA 148 (604)
T ss_pred CCCHHHHHHHHH------CCCCHHHHH--------HHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 999899997642------367146666--------532277479999702078714000879999999999986434666
Q ss_pred CC------CEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEE
Q ss_conf 54------148874032113455665531001123437637773110001115876568663123114562158998788
Q gi|254781172|r 269 NN------GVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDI 342 (731)
Q Consensus 269 ~~------~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf~~e~~~T~v~~I 342 (731)
T Consensus 149 ~~~~~~~~~~~~~~~~~dg~~l~~~A~~------~glEGIVaKR~DS~Y~~----GrRs~~W-lKiK~~-~~qe~VIg-- 214 (604)
T PRK09633 149 SPDPMGKARIQYIPSTTDFQALWKAVKR------YDGEGIVAKKKTSKWAE----NKRSKDW-LKLKNW-RLVHVIVT-- 214 (604)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHH------CCCCEEEEECCCCCCCC----CCCCCCE-EEEEEC-CCCEEEEE--
T ss_conf 6665677606733672429999999998------49970686269998789----9998660-786204-63029999--
Q ss_pred EEEECCCCEEE
Q ss_conf 99403562258
Q gi|254781172|r 343 DIQIGRTGILT 353 (731)
Q Consensus 343 ~wqvgRtG~it 353 (731)
T Consensus 215 Gy~~~-~G~l~ 224 (604)
T PRK09633 215 GYNPS-NGYFT 224 (604)
T ss_pred EEECC-CCCEE
T ss_conf 87279-98178