HHsearch alignment for GI: 254781172 and conserved domain: TIGR02779
>TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain; InterPro: IPR014146 DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see IPR009187 from INTERPRO), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This region represents the central ligase domain..
Probab=97.36 E-value=0.015 Score=38.82 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=101.5
Q ss_pred CCCCEEEEEEECCEEEEEEEEE-CCEEEEEEECCCCHHHHHHHHHH-HHHCCC----CCCCCCCCCCEEEEEEEEEEEC-
Q ss_conf 7761199994158189999985-99899888659865566699977-531024----3223354455048999999852-
Q gi|254781172|r 123 DNSIFFTLEPKIDGTMITIRYE-KGKFVYAALRGDGHSGEDVSACI-RAIPTI----PRVLSLNIPEIIEVRGEVYISK- 195 (731)
Q Consensus 123 ~~~~~~~vepKiDG~sisl~Y~-~G~L~~a~TRGdG~~GeDVT~n~-~~i~~i----P~~l~~~~~~~ieiRGEv~m~~- 195 (731)
T Consensus 12 P~G~~W~yEvK~DGYR~l~~i~~~g~-vrL~sR----ng~dwT~~fP~~~~~~~~~~~~~l~~---~~~~lDGE~VvL~~ 83 (328)
T TIGR02779 12 PTGDDWLYEVKFDGYRLLARIEEGGK-VRLISR----NGHDWTEKFPPELAAAEEIILAALPI---LPAILDGEIVVLDE 83 (328)
T ss_pred CCCCCCEEEEEECCEEEEEEEECCCC-EEEEEC----CCCCHHHHCCHHHHHHHHHHHHHCCC---CEEEEEEEEEEECC
T ss_conf 88678127851124047888840883-899735----88551442686689999999875478---80677037999468
Q ss_pred ---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCC-----CCCCHHHHHH-HHHCCC
Q ss_conf ---0212345564314854334234567777523455553011105664102454332-----1000036899-997599
Q gi|254781172|r 196 ---NDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIF-----AKGQYEMLQK-MRCLGF 266 (731)
Q Consensus 196 ---~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~-----~~~~~e~l~~-L~~~GF 266 (731)
T Consensus 84 ~G~~~F~~LQ~~~~~-------~~~~~I~~-------~~~~~~~~y~aFDLL~~~G~dL~~~pL~eRk~~L~~Ll~~~~~ 149 (328)
T TIGR02779 84 SGRSDFQALQNRLDA-------GKAEKIEK-------AAAKRPLTYYAFDLLYLDGEDLRDLPLSERKKLLEELLKAQKG 149 (328)
T ss_pred CCCCCHHHHHHHHHC-------CCHHHHHH-------HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 898787999776414-------76257899-------9722993799970456782476620289999999998611578
Q ss_pred CCCC-----CEEEEECC-CCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCC-CCCCEE
Q ss_conf 6654-----14887403-211345566553100112343763777311000111587656-866312
Q gi|254781172|r 267 PVNN-----GVRQANTF-HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR-SPRWMI 326 (731)
Q Consensus 267 ~v~~-----~~~~~~~~-~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~-~Prwai 326 (731)
T Consensus 150 ~~~p~~~~~~~~~s~~~~~~g~~l~~~a~------~~glEGvvaKr~dS~Y~~-----GrR~~~W~K 205 (328)
T TIGR02779 150 PLAPDPQAKAIRYSEHFEGDGQALLEAAC------RLGLEGVVAKRRDSPYRS-----GRRSADWLK 205 (328)
T ss_pred CCCCCCCCCEEEEEEECCCCHHHHHHHHH------HHCCCEEEEECCCCCCCC-----CCCCCCCCE
T ss_conf 87878775404788753675789999999------828962799527787678-----861565401