HHsearch alignment for GI: 254781172 and conserved domain: cd06846
>cd06846 Adenylation_DNA_ligase_family The Adenylation domain of proteins from the ATP-dependent polynucleotide ligase family is the minimal catalytic unit that is common to all family members. ATP-dependent polynucleotide ligases catalyze the phosphodiester bond formation of nicked nucleic acid substrates using ATP as a cofactor in a three step reaction mechanism. This family includes ATP-dependent DNA and RNA ligases. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP dependent DNA ligases have a highly modular architecture, consisting of a unique arrangement of two or more discrete domains, including a DNA-binding domain, an adenylation or nucleotidyltransferase (NTase) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many active site residues. Together with the C-terminal OB-fold domain, it comprises a catalytic core unit that is common to most members of the A
Probab=98.09 E-value=9.1e-05 Score=56.05 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=88.9
Q ss_pred CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHH
Q ss_conf 76119999415818999998599899888659865566699977531024322335445504899999985202123455
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~ 203 (731)
T Consensus 19 ~~~~w~~E~K~DG~R~~~~~~~~~-v~l~SR----~g~~~t~~~p~---~~~~~~-~~~~~~iLDGElv~~~~~~~---- 85 (187)
T cd06846 19 EDDGYYAQEKADGERALLSVLNGG-VFGISR----TGLEVPLPTII---ILAAKL-KLLPGFILDGEAVGERRGVK---- 85 (187)
T ss_pred CCCCEEEEEEECCEEEEEEEECCE-EEEEEC----CCCCCCCCCHH---HHHHHH-HCCCCCEEEEEEEEECCCCC----
T ss_conf 899789998073279999998999-999969----89985553877---999986-44898158989998758765----
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCC--CCCCCHHHHHHHHHCCCCCC----CCEEEEEC
Q ss_conf 6431485433423456777752345555301110566410245433--21000036899997599665----41488740
Q gi|254781172|r 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEI--FAKGQYEMLQKMRCLGFPVN----NGVRQANT 277 (731)
Q Consensus 204 ~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~--~~~~~~e~l~~L~~~GF~v~----~~~~~~~~ 277 (731)
T Consensus 86 -----------~~~~-----------~~~~~~~~~~~FDiL~l~g~~l~~~pl~~R~~~L~~~~~~~~~~~~~~~~~~~~ 143 (187)
T cd06846 86 -----------LIRP-----------FEANPKLQYYAFDVLELEGKDLRLLPYSRRLAYLKELGEEFAVKIVPLISAGKV 143 (187)
T ss_pred -----------CCCH-----------HHHCCCCEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf -----------6330-----------342268479998334689835245619999999999762168752675550457
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCC
Q ss_conf 32113455665531001123437637773110001115876568663
Q gi|254781172|r 278 FHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRW 324 (731)
Q Consensus 278 ~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~Prw 324 (731)
T Consensus 144 ~~~~~~~~~~~~~------~G~EGiv~K~~ds~Y~--~Gr~~~~~~W 182 (187)
T cd06846 144 DSPLDQLLARLDK------KGKEGIVFKHPDAPYK--AGRPGSGGTQ 182 (187)
T ss_pred HHHHHHHHHHHHH------CCCCEEEEECCCCCCC--CCCCCCCCCE
T ss_conf 0589999999987------6996278748999658--9987999987