HHsearch alignment for GI: 254781172 and conserved domain: cd07898
>cd07898 Adenylation_DNA_ligase The Adenylation domain of ATP-dependent DNA Ligases is a component of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to a specific function. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-sit
Probab=98.55 E-value=4.3e-06 Score=66.32 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=89.7
Q ss_pred CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHH
Q ss_conf 76119999415818999998599899888659865566699977531024322335445504899999985202123455
Q gi|254781172|r 124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALND 203 (731)
Q Consensus 124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~ 203 (731)
T Consensus 19 ~~~~~~~E~K~DG~R~~~~~~~~~-v~l~SR----~gk~~t~~fpei~~~~~~~--~~~~~~IlDGElv~~d~~~~---- 87 (201)
T cd07898 19 GPREMSFEIKYDGERCQVHKDGDR-VKLFSR----SGKDVTDDFPELAAAAKDC--ALPHSCILDGEIVAWDDNGG---- 87 (201)
T ss_pred CCCCEEEEEEECCEEEEEEEECCE-EEEEEC----CCCCCHHHHHHHHHHHHHC--CCCCCEEEEEEEEEECCCCC----
T ss_conf 898489998887189999998999-999958----9870012358899999854--68744599506999728999----
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHCCCCCCCCE-----EEEE
Q ss_conf 643148543342345677775234555530111056641024543321--000036899997599665414-----8874
Q gi|254781172|r 204 EMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGV-----RQAN 276 (731)
Q Consensus 204 ~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~--~~~~e~l~~L~~~GF~v~~~~-----~~~~ 276 (731)
T Consensus 88 ---------~~~~f~~~~~~~~~~~-~~~~~~~~~~vFDil~l~g~~l~~~pl~eR~~~L~~~~~~~~~~i~~~~~~~~~ 157 (201)
T cd07898 88 ---------KPLPFKALGRRFRGKR-LDEDVPVCLYAFDLLYLNGESLLDRPLSERRALLEDLVKEIPGRIRVAEQLIVD 157 (201)
T ss_pred ---------CCCCHHHHHHHCCCCC-CCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf ---------7769999852355432-110378289999765188850112879999999998751289838999999759
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHC
Q ss_conf 03211345566553100112343763777311000
Q gi|254781172|r 277 TFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL 311 (731)
Q Consensus 277 ~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~ 311 (731)
T Consensus 158 ~~~~i~~~~~~~~~------~G~EGimiK~~ds~Y 186 (201)
T cd07898 158 SIEELATAFSEARK------EGWEGLMLKRPDSTY 186 (201)
T ss_pred CHHHHHHHHHHHHH------CCCCEEEEECCCCCC
T ss_conf 89999999999997------899779973799962