HHsearch alignment for GI: 254781172 and conserved domain: cd07906

>cd07906 Adenylation_DNA_ligase_LigD The Adenylation domain of Mycobacterium tuberculosis LigD-like ATP-dependent DNA ligases is a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold dom
Probab=98.37  E-value=2.1e-05  Score=60.89  Aligned_cols=151  Identities=19%  Similarity=0.158  Sum_probs=86.8

Q ss_pred             CCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECH----HHH
Q ss_conf             7611999941581899999859989988865986556669997753102432233544550489999998520----212
Q gi|254781172|r  124 NSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKN----DFL  199 (731)
Q Consensus       124 ~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~----~F~  199 (731)
T Consensus        14 ~~~~~~~E~K~DG~R~~~~~~~~~-v~l~SR----~g~~~t~~fp~i~~~~~~~---~~~~~ILDGElv~~~~~~~~~F~   85 (186)
T cd07906          14 DGEDWLYEIKWDGYRALARVDGGR-VRLYSR----NGLDWTARFPELADALAAL---PVRSAVLDGEIVVLDEGGRPDFQ   85 (186)
T ss_pred             CCCCEEEEEEECCEEEEEEEECCE-EEEEEC----CCCCCCHHCHHHHHHHHHC---CCCCEEEEEEEEEECCCCCCCHH
T ss_conf             999768998478199999998999-999969----9984410167899999847---98758994369986799888989


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             3455643148543342345677775234555530111056641024543321--00003689999759966541488740
Q gi|254781172|r  200 ALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFA--KGQYEMLQKMRCLGFPVNNGVRQANT  277 (731)
Q Consensus       200 ~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~--~~~~e~l~~L~~~GF~v~~~~~~~~~  277 (731)
T Consensus        86 ~l~~r-------------------~~~----~~~~~v~~~vFDiL~l~g~~l~~~pl~eR~~~L~~l~~~~~~~i~~~~~  142 (186)
T cd07906          86 ALQNR-------------------LRL----ARTVPVVYYAFDLLYLDGEDLRGLPLLERKELLEELLPAASPRLRFSEH  142 (186)
T ss_pred             HHHHH-------------------HHC----CCCCCEEEEEEEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf             99867-------------------512----6777749999960028871500088999999999874247995897872


Q ss_pred             C-CCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHC
Q ss_conf             3-211345566553100112343763777311000
Q gi|254781172|r  278 F-HGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSL  311 (731)
Q Consensus       278 ~-~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~  311 (731)
T Consensus       143 ~~~~~~~~~~~~~~------~g~EGimiK~~~s~Y  171 (186)
T cd07906         143 FEGDGAALLEAACE------LGLEGIVAKRADSPY  171 (186)
T ss_pred             CCCCHHHHHHHHHH------CCCCEEEEECCCCCC
T ss_conf             55649999999997------799569986799941