HHsearch alignment for GI: 254781172 and conserved domain: pfam01653

>pfam01653 DNA_ligase_aden NAD-dependent DNA ligase adenylation domain. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilising either ATP or NAD(+) as a cofactor. This domain is the catalytic adenylation domain. The NAD+ group is covalently attached to this domain at the lysine in the KXDG motif of this domain. This enzyme- adenylate intermediate is an important feature of the proposed catalytic mechanism.
Probab=100.00  E-value=0  Score=747.00  Aligned_cols=312  Identities=41%  Similarity=0.725  Sum_probs=296.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             99999999999999999984331779820878999999999999897720311589999620036432357750451664
Q gi|254781172|r   15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP   94 (731)
Q Consensus        15 ~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~~~~~~~p~spt~~Vg~~~~~~~~kv~H~~p   94 (731)
T Consensus         1 e~~k~~i~~L~~~I~~~n~~YY~~~~p~ISD~eYD~L~~eL~~le~~~P~l~---~~~spt~~VG~~~~~~f~kv~H~~p   77 (315)
T pfam01653         1 EEAQQEIARLRELIRQYDYHYYVLDNPEVPDAEYDRLYRRLQALEEKFPELI---TPDSPTQRVGAPLLGDFKKVRHPAP   77 (315)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHCC---CCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf             9589999999999999999986489997999999999999999998691004---8999522358765577750036875


Q ss_pred             CCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf             25702159999999999999986124677761199994158189999985998998886598655666999775310243
Q gi|254781172|r   95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP  174 (731)
Q Consensus        95 MlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP  174 (731)
T Consensus        78 MlSL~k~~~~~el~~w~~r~~~~~~~---~~~~~~~e~KiDGlsisL~Y~~G~L~~a~TRGDG~~GeDIT~nv~~I~~iP  154 (315)
T pfam01653        78 MLSLDNAFDEDELAAWIRRIRRRLGN---SEKAYVVEPKIDGVAVSLTYEDGVLVRAATRGDGTTGEDVTQNVKTIRAIP  154 (315)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCEEEEECCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHCCCH
T ss_conf             65521115667799999999875188---875358876247710478980890568875589864217176564333660


Q ss_pred             CCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCEEEEEEECCCCC--CCC
Q ss_conf             2233544550489999998520212345564314854334234567777523455553-0111056641024543--321
Q gi|254781172|r  175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE--IFA  251 (731)
Q Consensus       175 ~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~-~r~L~f~ay~~~~~~~--~~~  251 (731)
T Consensus       155 ~~l~~~-~~~ievRGEv~i~~~~F~~lN~~~~~~~~~~faNpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~  233 (315)
T pfam01653       155 LTLPGD-PARLEVRGEVFMPKEDFEALNEEREEEGEKPFANPRNAAAGSLRQLDPEITAKRKLRFFVYGLGLPEGLELGP  233 (315)
T ss_pred             HHCCCC-CCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf             211799-8728999999964789889889999727886778289999998625951221687779998676666677785


Q ss_pred             CCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECCC
Q ss_conf             00003689999759966541488740321134556655310011234376377731100011158765686631231145
Q gi|254781172|r  252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA  331 (731)
Q Consensus       252 ~~~~e~l~~L~~~GF~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf~  331 (731)
T Consensus       234 ~t~~e~l~~L~~~GF~~~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGiVikvn~~~~q~~LG~ts~~PrwAiA~Kf~  313 (315)
T pfam01653       234 QTQSEALKQLKSLGFPVSPHTRLCKNIDEVLDYYAEWEKKRDELPFEIDGVVVKVNELPLQRELGFTSKAPRWAIAYKFP  313 (315)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCEEEECCC
T ss_conf             68999999999779976871178799999999999999777629988874799980989999828767998843786768


Q ss_pred             CC
Q ss_conf             62
Q gi|254781172|r  332 EK  333 (731)
Q Consensus       332 ~e  333 (731)
T Consensus       314 ~E  315 (315)
T pfam01653       314 AE  315 (315)
T ss_pred             CC
T ss_conf             99