HHsearch alignment for GI: 254781172 and conserved domain: pfam01653
>pfam01653 DNA_ligase_aden NAD-dependent DNA ligase adenylation domain. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilising either ATP or NAD(+) as a cofactor. This domain is the catalytic adenylation domain. The NAD+ group is covalently attached to this domain at the lysine in the KXDG motif of this domain. This enzyme- adenylate intermediate is an important feature of the proposed catalytic mechanism.
Probab=100.00 E-value=0 Score=747.00 Aligned_cols=312 Identities=41% Similarity=0.725 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 99999999999999999984331779820878999999999999897720311589999620036432357750451664
Q gi|254781172|r 15 EQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIP 94 (731)
Q Consensus 15 ~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~~~~~~~p~spt~~Vg~~~~~~~~kv~H~~p 94 (731)
T Consensus 1 e~~k~~i~~L~~~I~~~n~~YY~~~~p~ISD~eYD~L~~eL~~le~~~P~l~---~~~spt~~VG~~~~~~f~kv~H~~p 77 (315)
T pfam01653 1 EEAQQEIARLRELIRQYDYHYYVLDNPEVPDAEYDRLYRRLQALEEKFPELI---TPDSPTQRVGAPLLGDFKKVRHPAP 77 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHCC---CCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 9589999999999999999986489997999999999999999998691004---8999522358765577750036875
Q ss_pred CCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 25702159999999999999986124677761199994158189999985998998886598655666999775310243
Q gi|254781172|r 95 TLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIP 174 (731)
Q Consensus 95 MlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP 174 (731)
T Consensus 78 MlSL~k~~~~~el~~w~~r~~~~~~~---~~~~~~~e~KiDGlsisL~Y~~G~L~~a~TRGDG~~GeDIT~nv~~I~~iP 154 (315)
T pfam01653 78 MLSLDNAFDEDELAAWIRRIRRRLGN---SEKAYVVEPKIDGVAVSLTYEDGVLVRAATRGDGTTGEDVTQNVKTIRAIP 154 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCEEEEECCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHCCCH
T ss_conf 65521115667799999999875188---875358876247710478980890568875589864217176564333660
Q ss_pred CCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCEEEEEEECCCCC--CCC
Q ss_conf 2233544550489999998520212345564314854334234567777523455553-0111056641024543--321
Q gi|254781172|r 175 RVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSE--IFA 251 (731)
Q Consensus 175 ~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~-~r~L~f~ay~~~~~~~--~~~ 251 (731)
T Consensus 155 ~~l~~~-~~~ievRGEv~i~~~~F~~lN~~~~~~~~~~faNpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~ 233 (315)
T pfam01653 155 LTLPGD-PARLEVRGEVFMPKEDFEALNEEREEEGEKPFANPRNAAAGSLRQLDPEITAKRKLRFFVYGLGLPEGLELGP 233 (315)
T ss_pred HHCCCC-CCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 211799-8728999999964789889889999727886778289999998625951221687779998676666677785
Q ss_pred CCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECCC
Q ss_conf 00003689999759966541488740321134556655310011234376377731100011158765686631231145
Q gi|254781172|r 252 KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFA 331 (731)
Q Consensus 252 ~~~~e~l~~L~~~GF~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf~ 331 (731)
T Consensus 234 ~t~~e~l~~L~~~GF~~~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGiVikvn~~~~q~~LG~ts~~PrwAiA~Kf~ 313 (315)
T pfam01653 234 QTQSEALKQLKSLGFPVSPHTRLCKNIDEVLDYYAEWEKKRDELPFEIDGVVVKVNELPLQRELGFTSKAPRWAIAYKFP 313 (315)
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 68999999999779976871178799999999999999777629988874799980989999828767998843786768
Q ss_pred CC
Q ss_conf 62
Q gi|254781172|r 332 EK 333 (731)
Q Consensus 332 ~e 333 (731)
T Consensus 314 ~E 315 (315)
T pfam01653 314 AE 315 (315)
T ss_pred CC
T ss_conf 99