HHsearch results for GI: 254781172 and protein with PDBid: 1vq8_Y
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=99.89 E-value=9.4e-30 Score=247.55 Aligned_cols=220 Identities=9% Similarity=0.042 Sum_probs=168.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-H
Q ss_conf 655332130123103541035555653057654045410110106777531000100013421001456899998752-2
Q gi|254781172|r 469 LERLKHFVSRDAFNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRR-N 547 (731)
Q Consensus 469 ~~~i~hF~SK~aldI~GLG~k~Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~l~~l~GfgeKsa~nL~~sIe~sK-~ 547 (731)
++.-.-|. .-+||+|+|++++++|+++| +.+++|||.++.. +|.+++|||+|+|+||+++|+.++ .
T Consensus 8 ~~~~~~~~--~l~~i~gvG~~~~~~l~~~g-----~~~~~~i~~~~~~------~L~~~~g~g~k~a~~i~~~i~~~~~~ 74 (241)
T 1vq8_Y 8 VEAEEEYT--ELTDISGVGPSKAESLREAG-----FESVEDVRGADQS------ALADVSGIGNALAARIKADVGGLEVE 74 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH--HHCCCCCCCHHHHHHHHHCC-----CCCHHHHHHCCHH------HHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88688674--32588998999999999768-----9999999869999------99746895799999999998650032
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 34666776301011116899999988299899999789776125117787613888678999999999669799999999
Q gi|254781172|r 548 ISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEA 627 (731)
Q Consensus 548 ~~L~r~L~ALGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ff~~~~n~~~i~~ 627 (731)
.++.++++++|++++|..+++.|+++|++++.+. ..+.+++..++|+|+++|.+|++|+.+..+ ....+
T Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~l~----------~~~~e~l~~i~~ig~~~a~~~~~~~~~~~~-~~~~~ 143 (241)
T 1vq8_Y 75 SETEAEVEEEGGEEAPDEDVETELQARGLTEKTP----------DLSDEDARLLTQRHRVGKPQFNRQDHHKKK-RVSTS 143 (241)
T ss_dssp ---------------------CCEEECSCTTCCC----------CCCHHHHHHHHHHHHHCCCCCCCTTGGGCT-TSCSS
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHH----------HCCHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 0688998762001300788999999727889887----------389999835565168999999999899887-76888
Q ss_pred HHH----------HCCCCCCCCCCCCCCCCCCCEEEEECCCC--CCCHHHHHHH-HHHCCCEEEEEEECCEEEEEECCCC
Q ss_conf 997----------33877654322468821686699972588--9987899999-9982984998111632179977888
Q gi|254781172|r 628 LLK----------EVSPSIGRHEKNVSSEIENKKLVFTGTLQ--KIQRHKAQEY-VTQLGAVVSAILSRKTDIIIVGDNP 694 (731)
Q Consensus 628 L~~----------~~~~~~~~~~~~~~~~l~gk~vV~TGtl~--~~~R~e~~~~-ie~~Ggkv~sSVSkkT~~LI~ge~~ 694 (731)
|.+ ..............+++.++.+++||+.. .+++.+++.. ++..||+|++|||+||||||
T Consensus 144 ~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~dl~~~~~e~~G~kv~ssVSsKtd~lI----- 218 (241)
T 1vq8_Y 144 WRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRERI----- 218 (241)
T ss_dssp CCCCCCTTCTTTTTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEESSGGGGTTCCTTTEEEEECTTSCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCEEECCCCCCCCCHHH-----
T ss_conf 985531178999884377665553557754555511105589861589999988898538788276446677999-----
Q ss_pred CCHHHHHHHCCCEEECHHHHHHHHHH
Q ss_conf 86379899749917379999999988
Q gi|254781172|r 695 GSKLEKAQQLGVKIMNEEQFLFLLQQ 720 (731)
Q Consensus 695 gSKl~KA~~LgI~Ii~e~ef~~ll~~ 720 (731)
++||++|||+||++++|..+++|
T Consensus 219 ---l~KA~eLGIkIlN~~~~~~~~~~ 241 (241)
T 1vq8_Y 219 ---EEEAEDAGIRVLNPTYVEVEVSE 241 (241)
T ss_dssp ---HHHHHHTTCCBSSCCEEEC----
T ss_pred ---HHHHHHCCCCCCCHHHHHHHHCC
T ss_conf ---99999859944687999987239