HHsearch results for GI: 254781172 and protein with PDBid: 2a1j_A

>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*

Probab=97.65  E-value=2.5e-05  Score=58.66  Aligned_cols=52  Identities=19%  Similarity=0.139  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf             010111168999999882998999997897761251177876138886789999999996697
Q gi|254781172|r  557 LGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNP  619 (731)
Q Consensus       557 LGI~~vG~~~Ak~La~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ff~~~  619 (731)
                      ..|||||.++++.|.++|+|+.++.+          ++.++|.+|.| |++.|+.|.+||+.+
T Consensus         7 ~~IPGIg~~~~~~Ll~~fgSi~~l~~----------as~eeL~~v~G-~~~~A~~i~~~l~~~   58 (63)
T 2a1j_A            7 LKMPGVNAKNCRSLMHHVKNIAELAA----------LSQDELTSILG-NAANAKQLYDFIHTS   58 (63)
T ss_dssp             HTSTTCCHHHHHHHHHHCSSHHHHHT----------CCHHHHHHHHS-CHHHHHHHHHHHHCC
T ss_pred             HCCCCCCHHHHHHHHHHCCCHHHHHH----------CCHHHHHHCCC-CHHHHHHHHHHHCCC
T ss_conf             52999889999999998679999987----------99999987869-899999999998021