HHsearch results for GI: 254781172 and protein with PDBid: 2owo_A
>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12}
Probab=100.00 E-value=0 Score=1548.72 Aligned_cols=664 Identities=37% Similarity=0.663 Sum_probs=628.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 99999999999999999998433177982087899999999999989772031158999962003643235775045166
Q gi|254781172|r 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 (731)
Q Consensus 14 ~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~~~~~~~p~spt~~Vg~~~~~~~~kv~H~~ 93 (731)
|+++++||.+|+++|++||++||++++|+|||+|||+|+++|+.||++||+++ +|+||||+||+++..+|.||+|++
T Consensus 1 m~~~~~~i~~L~~~i~~~~~~YY~~~~p~isD~eYD~L~~eL~~le~~~p~~~---~~~spt~~VG~~~~~~~~kv~H~~ 77 (671)
T 2owo_A 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELI---TPDSPTQRVGAAPLAAFSQIRHEV 77 (671)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHHHHHCTTSC---CTTSGGGCCSCCCCBCCCEEECSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 92799999999999999999874499997898999999999999998681556---999986544666267887306897
Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 42570215999999999999998612467776119999415818999998599899888659865566699977531024
Q gi|254781172|r 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173 (731)
Q Consensus 94 pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~i 173 (731)
|||||+|+|+.+||.+|++|+.+.+.. .+...|+||||+||+|++|+|++|+|++|+|||||.+|||||+|+++|++|
T Consensus 78 pMlSL~k~~~~~el~~~~~r~~~~l~~--~~~~~~~~e~KiDGls~~L~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~i 155 (671)
T 2owo_A 78 PMLSLDNVFDEESFLAFNKRVQDRLKN--NEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAI 155 (671)
T ss_dssp CCCCCEEECSHHHHHHHHHHHHHHSSS--CCCCCEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHCCC
T ss_conf 786733559999999999999987364--788228998613527999999899998976479996434847656553157
Q ss_pred CCCCCC-CCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCEEEEEEECCCC-CCC
Q ss_conf 322335-44550489999998520212345564314854334234567777523455553-011105664102454-332
Q gi|254781172|r 174 PRVLSL-NIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTS-EIF 250 (731)
Q Consensus 174 P~~l~~-~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~-~r~L~f~ay~~~~~~-~~~ 250 (731)
|+++.. ++|+.+|||||+||++++|+++|+++.+.|+++|+||||+|||+|||+||..+ .|+|.|++|++.... ...
T Consensus 156 p~~~~~~~~p~~levRGEv~~~~~~f~~~n~~~~~~~~~~faNpRN~aaG~lr~~d~~~~~~r~l~~~~~~~~~~~~~~~ 235 (671)
T 2owo_A 156 PLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL 235 (671)
T ss_dssp CSBCCSSSCCSEEEEEEEEECCHHHHHHHHHHHHHSSCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCC
T ss_pred CCCCCCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 76423357985078876899757667877655430267655457889888750467266645776089981224335778
Q ss_pred CCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECC
Q ss_conf 10000368999975996654148874032113455665531001123437637773110001115876568663123114
Q gi|254781172|r 251 AKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKF 330 (731)
Q Consensus 251 ~~~~~e~l~~L~~~GF~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf 330 (731)
..+|++.+.++..|||+++++...+.+.+++..++++|...|..+||+|||+|||+||+.+|+.||+|+|+|||||||||
T Consensus 236 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~t~~~PrwaiA~Kf 315 (671)
T 2owo_A 236 PDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKF 315 (671)
T ss_dssp CSBHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 21389999999970887552011011044422467789987630666677259983428889860997889872689840
Q ss_pred CCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 56215899878899403562258999974333026400010148989997502345432224684407689998358702
Q gi|254781172|r 331 AEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVI 410 (731)
Q Consensus 331 ~~e~~~T~v~~I~wqvgRtG~itPva~~ePV~l~G~~V~ratlhN~~~I~~l~~~~~~~~~~~~I~iGd~V~I~RaGdVI 410 (731)
|+++++|+|++|+|||||||+|||||+|+||.|+|+||+||||||+++|+++ ||+|||+|.|+||||||
T Consensus 316 ~~~~~~T~v~~I~~qVGRtG~itPva~lePV~l~G~tVsraTLhN~~~I~~~-----------~i~iGd~V~I~raGdVI 384 (671)
T 2owo_A 316 PAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERL-----------GLRIGDKVVIRRAGDVI 384 (671)
T ss_dssp CCCEEEEEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCSHHHHHHH-----------TCCBTCEEEEEEETTTE
T ss_pred CHHHHEEEEEEEEEEECCCCEEEEEEEEEEEEECCEEEEECCCCCHHHHHHC-----------CCCCCCEEEEEECCCCC
T ss_conf 3031346534479984378446379998459824658887133788999976-----------96539878987438866
Q ss_pred HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 56654101235787304777043265775010337865445210100354344114466553321301231035410355
Q gi|254781172|r 411 PKVVDIIVNERHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQ 490 (731)
Q Consensus 411 P~I~~Vi~~~r~~~~~~~~~P~~CP~Cgs~l~~~~~~~~~~~~~~~rC~n~~~Cpaq~~~~i~hF~SK~aldI~GLG~k~ 490 (731)
|+|++|+++.|+.++.+|.+|++||+||+++++..++ +++||+|+.+||+|++++|.|||||+||||+|||+++
T Consensus 385 PkI~~Vv~~~r~~~~~~~~~p~~CP~c~~~l~~~~~~------~~~~c~n~~~C~aq~~~~i~hF~sk~~mdI~GlG~~~ 458 (671)
T 2owo_A 385 PQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGE------AVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKI 458 (671)
T ss_dssp EEEEEECGGGCCSSCBCCCCCSBCTTTCCBEEECTTC------SCEEECCGGGCHHHHHHHHHHHHSTTTTCCTTCCHHH
T ss_pred CCCEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEECCC------EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 5402300300898887766888899889755774697------3489689876389999999999875313777724899
Q ss_pred HHHHHCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 55653057654045410110106777531000100013421001456899998752234666776301011116899999
Q gi|254781172|r 491 LDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIRHVGAEIARSL 570 (731)
Q Consensus 491 Ie~L~e~~~~~g~I~~~~DLy~L~~~~~~~~~~l~~l~GfgeKsa~nL~~sIe~sK~~~L~r~L~ALGI~~vG~~~Ak~L 570 (731)
|++|+++ |+|++|+|||.|+.. +|..++|||+|||+||+++|++||+++|+|||+|||||++|+.+|++|
T Consensus 459 i~~L~~~----G~i~~~~Di~~L~~~------~l~~l~gfg~Ksa~nL~~sIe~sk~~~l~r~L~ALGI~~vG~~~ak~L 528 (671)
T 2owo_A 459 IDQLVEK----EYVHTPADLFKLTAG------KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGL 528 (671)
T ss_dssp HHHHHHT----TCCSSGGGGGTCCHH------HHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHH
T ss_pred HHHHHHC----CCCCCHHHHHHHHHH------HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHH
T ss_conf 9987365----786888999650177------776654114267899999998750698999998643777547789999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC---CCCCCCCCC
Q ss_conf 98829989999978977612511778761388867899999999966979999999999733877654---322468821
Q gi|254781172|r 571 AKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGR---HEKNVSSEI 647 (731)
Q Consensus 571 a~~f~si~~l~~~~~~~~~~~~~~~e~L~~I~GiG~~~A~si~~ff~~~~n~~~i~~L~~~~~~~~~~---~~~~~~~~l 647 (731)
+++|++++.+.. .+.++|.+|+|||+++|++|.+||+++.|++++++|+..+...... .....+++|
T Consensus 529 a~~f~~l~~l~~----------as~eeL~~I~gIG~~~A~si~~ff~~~~n~~~i~~L~~~G~~~~~~~~~~~~~~~~~l 598 (671)
T 2owo_A 529 AAYFGTLEALEA----------ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPF 598 (671)
T ss_dssp HHHHCSHHHHHT----------CCHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHHHHHHHHTCBCCCC------------
T ss_pred HHHCCCHHHHHC----------CCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 886299999873----------8999996449816999999999974989999999999848885664334543458976
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCHHHHHHHCCCEEECHHHHHHHHH
Q ss_conf 686699972588998789999999829849981116321799778888637989974991737999999998
Q gi|254781172|r 648 ENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQ 719 (731)
Q Consensus 648 ~gk~vV~TGtl~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~gSKl~KA~~LgI~Ii~e~ef~~ll~ 719 (731)
+||+|||||+|++|+|+|++++||++||+|+|||||||||||+|+++|||++||++|||+||+|+||++||+
T Consensus 599 ~gk~~ViTG~l~~~~R~e~~~~ie~~Ggkv~ssVSkkTd~Lv~g~~~gSKl~KA~~LgI~Ii~e~ef~~ll~ 670 (671)
T 2owo_A 599 AGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCHHHHHHHCCCCEECHHHHHHHHC
T ss_conf 898899940689999899999999779999465247760899899987399999983991843999999867