HHsearch results for GI: 254781172 and protein with PDBid: 2vug_A

>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.01  E-value=8.1e-09  Score=85.69  Aligned_cols=147  Identities=17%  Similarity=0.229  Sum_probs=101.6

Q ss_pred             CCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHH
Q ss_conf             61199994158189999985998998886598655666999775310243223354455048999999852021234556
Q gi|254781172|r  125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE  204 (731)
Q Consensus       125 ~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~  204 (731)
                      ..+|+||.|+||..+.++|.+|.. ++.||| |....+.|.++..+  ++..+....| .+.+.||+++....|...   
T Consensus        94 ~~~~~vEeK~DG~Rvqih~~~g~v-~~~SR~-g~~~~~~t~~~~~~--i~~~~~~~~~-~~iLdGE~vg~~~~~~~~---  165 (389)
T 2vug_A           94 RGEFYVEEKVDGYNVRVVMYKGKM-LGITRG-GFICPFTTERIPDF--VPQEFFKDNP-NLILVGEMAGPESPYLVE---  165 (389)
T ss_dssp             SCEEEEEEECCSEEEEEEEETTEE-EEEETT-SCBCHHHHHHGGGT--SCTHHHHHCT-TEEEEEEEESSSCSSCSC---
T ss_pred             CCCEEEEEEECCEEEEEEEECCEE-EEECCC-CCCCCCCHHHHHHH--HHHHHHCCCC-CEEEEEEEEECCCCCCCC---
T ss_conf             984899980777089999989999-998689-84688613557999--9998636799-889998999658985300---


Q ss_pred             HHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEE--ECCCCHH
Q ss_conf             43148543342345677775234555530111056641024543321000036899997599665414887--4032113
Q gi|254781172|r  205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQA--NTFHGIV  282 (731)
Q Consensus       205 ~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~~~~~e~l~~L~~~GF~v~~~~~~~--~~~~~~~  282 (731)
                                             ......+++.|++|++.+.++....++.+..+.|+..+++.++.....  .+.+++.
T Consensus       166 -----------------------~~~~~~~~~~f~vFDil~~~g~~~lp~~eRr~lLe~~~~~~v~~~~~~~~~~~~ei~  222 (389)
T 2vug_A          166 -----------------------GPPYVKEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELY  222 (389)
T ss_dssp             -----------------------CCTTCCSSCEEEEEEEEETTTCCBCCHHHHHHHHHHHTCCBCCEEEEEEGGGHHHHH
T ss_pred             -----------------------CCCCCCCCCEEEEEEEEECCCCEECCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHH
T ss_conf             -----------------------543345782499977787599735379999999997089851001322332178999


Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf             45566553100112343763777311
Q gi|254781172|r  283 SYYNEMKSIRSTLPYDIDGLVYKVDE  308 (731)
Q Consensus       283 ~~~~~~~~~r~~l~y~iDGiVikvn~  308 (731)
                      +++++..+.      ...|||+|--|
T Consensus       223 ~~~~~~~~~------g~EGvVlK~~d  242 (389)
T 2vug_A          223 QLIERLSKE------GREGIIMKSPD  242 (389)
T ss_dssp             HHHHHHHHT------TCCEEEEECTT
T ss_pred             HHHHHHHCC------CCCEEEEECCC
T ss_conf             999998527------98769994579