HHsearch results for GI: 254781172 and protein with PDBid: 2vug_A
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=99.01 E-value=8.1e-09 Score=85.69 Aligned_cols=147 Identities=17% Similarity=0.229 Sum_probs=101.6
Q ss_pred CCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHH
Q ss_conf 61199994158189999985998998886598655666999775310243223354455048999999852021234556
Q gi|254781172|r 125 SIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDE 204 (731)
Q Consensus 125 ~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~iP~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~ 204 (731)
..+|+||.|+||..+.++|.+|.. ++.||| |....+.|.++..+ ++..+....| .+.+.||+++....|...
T Consensus 94 ~~~~~vEeK~DG~Rvqih~~~g~v-~~~SR~-g~~~~~~t~~~~~~--i~~~~~~~~~-~~iLdGE~vg~~~~~~~~--- 165 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVMYKGKM-LGITRG-GFICPFTTERIPDF--VPQEFFKDNP-NLILVGEMAGPESPYLVE--- 165 (389)
T ss_dssp SCEEEEEEECCSEEEEEEEETTEE-EEEETT-SCBCHHHHHHGGGT--SCTHHHHHCT-TEEEEEEEESSSCSSCSC---
T ss_pred CCCEEEEEEECCEEEEEEEECCEE-EEECCC-CCCCCCCHHHHHHH--HHHHHHCCCC-CEEEEEEEEECCCCCCCC---
T ss_conf 984899980777089999989999-998689-84688613557999--9998636799-889998999658985300---
Q ss_pred HHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEE--ECCCCHH
Q ss_conf 43148543342345677775234555530111056641024543321000036899997599665414887--4032113
Q gi|254781172|r 205 MIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFVHGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQA--NTFHGIV 282 (731)
Q Consensus 205 ~~~~g~~~f~NpRN~aaG~lr~~d~~~~~r~L~f~ay~~~~~~~~~~~~~~e~l~~L~~~GF~v~~~~~~~--~~~~~~~ 282 (731)
......+++.|++|++.+.++....++.+..+.|+..+++.++..... .+.+++.
T Consensus 166 -----------------------~~~~~~~~~~f~vFDil~~~g~~~lp~~eRr~lLe~~~~~~v~~~~~~~~~~~~ei~ 222 (389)
T 2vug_A 166 -----------------------GPPYVKEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELY 222 (389)
T ss_dssp -----------------------CCTTCCSSCEEEEEEEEETTTCCBCCHHHHHHHHHHHTCCBCCEEEEEEGGGHHHHH
T ss_pred -----------------------CCCCCCCCCEEEEEEEEECCCCEECCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHH
T ss_conf -----------------------543345782499977787599735379999999997089851001322332178999
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 45566553100112343763777311
Q gi|254781172|r 283 SYYNEMKSIRSTLPYDIDGLVYKVDE 308 (731)
Q Consensus 283 ~~~~~~~~~r~~l~y~iDGiVikvn~ 308 (731)
+++++..+. ...|||+|--|
T Consensus 223 ~~~~~~~~~------g~EGvVlK~~d 242 (389)
T 2vug_A 223 QLIERLSKE------GREGIIMKSPD 242 (389)
T ss_dssp HHHHHHHHT------TCCEEEEECTT
T ss_pred HHHHHHHCC------CCCEEEEECCC
T ss_conf 999998527------98769994579