HHsearch results for GI: 254781172 and protein with PDBid: 3ef1_A

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=98.71  E-value=4.1e-08  Score=80.26  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=67.5

Q ss_pred             CCCCCCCEEEEECCCCC---CCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCHHHHHHHCC-CEEECHHHHHHHHH
Q ss_conf             88216866999725889---987899999998298499811163217997788886379899749-91737999999998
Q gi|254781172|r  644 SSEIENKKLVFTGTLQK---IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLG-VKIMNEEQFLFLLQ  719 (731)
Q Consensus       644 ~~~l~gk~vV~TGtl~~---~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~gSKl~KA~~Lg-I~Ii~e~ef~~ll~  719 (731)
                      ...|.|.+|||||.+..   ..|.++..+++.+||+|.++|+++|++||++...+.|+.+|+++| |+|++.+.+..=+.
T Consensus       350 ~~vL~g~~i~fsG~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~ThvV~~~~~t~K~~~A~~~~~i~iV~~~Wl~~c~~  429 (442)
T 3ef1_A          350 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLS  429 (442)
T ss_dssp             HTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHHH
T ss_pred             HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCEEECHHHHHHHHH
T ss_conf             76418978999224479998456599999997699994867999628996899988999998779978987999999999


Q ss_pred             HH
Q ss_conf             82
Q gi|254781172|r  720 QY  721 (731)
Q Consensus       720 ~~  721 (731)
                      ..
T Consensus       430 ~~  431 (442)
T 3ef1_A          430 QW  431 (442)
T ss_dssp             HT
T ss_pred             HC
T ss_conf             64