HHsearch results for GI: 254781172 and protein with PDBid: 3ii6_X

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.26  E-value=3.1e-06  Score=65.68  Aligned_cols=79  Identities=13%  Similarity=0.120  Sum_probs=57.0

Q ss_pred             CCCCCCCEEEEECC---------CCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCHHH-----HHHHCCCEEE
Q ss_conf             88216866999725---------889987899999998298499811163217997788886379-----8997499173
Q gi|254781172|r  644 SSEIENKKLVFTGT---------LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE-----KAQQLGVKIM  709 (731)
Q Consensus       644 ~~~l~gk~vV~TGt---------l~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~gSKl~-----KA~~LgI~Ii  709 (731)
                      ...|.|..+.+.|.         +....+..+...+..+||++..+.+.+++++|+.+..+.+..     .+...++.|+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~thvv~~~~~~~~~~~~~~~~~~~~~~~iV  241 (263)
T 3ii6_X          162 LSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKIL  241 (263)
T ss_dssp             GGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEEE
T ss_pred             HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEE
T ss_conf             12137738997076555654321204689999999985397663134677337998067651166899997428999893


Q ss_pred             CHHHHHHHHHHHC
Q ss_conf             7999999998828
Q gi|254781172|r  710 NEEQFLFLLQQYN  722 (731)
Q Consensus       710 ~e~ef~~ll~~~~  722 (731)
                      ++..+.+=+.+..
T Consensus       242 t~~Wl~~c~~~~~  254 (263)
T 3ii6_X          242 KESWVTDSIDKCE  254 (263)
T ss_dssp             ETHHHHHHHHTTS
T ss_pred             CHHHHHHHHHCCC
T ss_conf             5899999998598