HHsearch results for GI: 254781172 and protein with PDBid: 3ii6_X
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.26 E-value=3.1e-06 Score=65.68 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=57.0
Q ss_pred CCCCCCCEEEEECC---------CCCCCHHHHHHHHHHCCCEEEEEEECCEEEEEECCCCCCHHH-----HHHHCCCEEE
Q ss_conf 88216866999725---------889987899999998298499811163217997788886379-----8997499173
Q gi|254781172|r 644 SSEIENKKLVFTGT---------LQKIQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLE-----KAQQLGVKIM 709 (731)
Q Consensus 644 ~~~l~gk~vV~TGt---------l~~~~R~e~~~~ie~~Ggkv~sSVSkkT~~LI~ge~~gSKl~-----KA~~LgI~Ii 709 (731)
...|.|..+.+.|. +....+..+...+..+||++..+.+.+++++|+.+..+.+.. .+...++.|+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~thvv~~~~~~~~~~~~~~~~~~~~~~~iV 241 (263)
T 3ii6_X 162 LSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKIL 241 (263)
T ss_dssp GGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEEE
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 12137738997076555654321204689999999985397663134677337998067651166899997428999893
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 7999999998828
Q gi|254781172|r 710 NEEQFLFLLQQYN 722 (731)
Q Consensus 710 ~e~ef~~ll~~~~ 722 (731)
++..+.+=+.+..
T Consensus 242 t~~Wl~~c~~~~~ 254 (263)
T 3ii6_X 242 KESWVTDSIDKCE 254 (263)
T ss_dssp ETHHHHHHHHTTS
T ss_pred CHHHHHHHHHCCC
T ss_conf 5899999998598