HHsearch results for GI: 254781172 and protein with PDBid: 3jsl_A
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB: 3jsn_A*
Probab=100.00 E-value=0 Score=665.22 Aligned_cols=313 Identities=35% Similarity=0.598 Sum_probs=296.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 99999999999999999998433177982087899999999999989772031158999962003643235775045166
Q gi|254781172|r 14 IEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSI 93 (731)
Q Consensus 14 ~~~~~~~i~~L~~~i~~~~~~Yy~~~~p~isD~eYD~L~~~L~~le~~~p~~~~~~~p~spt~~Vg~~~~~~~~kv~H~~ 93 (731)
|++++.||.+|+++|++||++||+.|+|+|||++||+|+++|+.||++||++. +++|||++||+.+...+.||+|+.
T Consensus 1 ~~~~~~~i~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~~L~~le~~~p~l~---~~~spt~~vg~~~~~~~~kv~h~~ 77 (318)
T 3jsl_A 1 MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYK---TVDSPTVRVGGEAQASFNKVNHDT 77 (318)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHCGGGC---CTTCGGGGGCCSCCCCCCEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 93199999999999999999987289997988999999999999998680114---789987554754456676545676
Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 42570215999999999999998612467776119999415818999998599899888659865566699977531024
Q gi|254781172|r 94 PTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTI 173 (731)
Q Consensus 94 pMlSL~k~~~~~el~~w~~~~~~~~~~~~~~~~~~~vepKiDG~sisl~Y~~G~L~~a~TRGdG~~GeDVT~n~~~i~~i 173 (731)
|||||+|+++.+++.+|..|+.+.. +...|+|||||||+|++|+|++|+|++|+|||||.+|||||+|+++|++|
T Consensus 78 pmlSl~k~~~~~~~~~~~~~~~k~~-----~~~~~~ve~KlDG~s~~l~Y~~G~l~~a~TRGdG~~GeDIT~~~~~i~~i 152 (318)
T 3jsl_A 78 PMLSLGNAFNEDDLRKFDQRIREQI-----GNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAI 152 (318)
T ss_dssp CCCCCEEECSHHHHHHHHHHHHHHT-----CSCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC-----CCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEHHHCCCCCCC
T ss_conf 6221123333567888988766316-----98148999735541689998189679978678987022754003336788
Q ss_pred CCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHH-HCCCEEEEEEECCCCCCCCC
Q ss_conf 32233544550489999998520212345564314854334234567777523455553-01110566410245433210
Q gi|254781172|r 174 PRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDI-TRYLNFFVHGLGKTSEIFAK 252 (731)
Q Consensus 174 P~~l~~~~~~~ieiRGEv~m~~~~F~~lN~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~-~r~L~f~ay~~~~~~~~~~~ 252 (731)
|+++. .|+.++||||+||++++|+++|+.+.+.+++.|+||||+|||+||+++|... .|.|.|++|+++........
T Consensus 153 P~~~~--~~~~i~iRGEl~i~k~~f~~~n~~~~~~~~~~f~NpRN~vaG~l~~k~~~~~~~~~l~f~~~~~~~~~~~~~~ 230 (318)
T 3jsl_A 153 PLKMK--EPLNVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNAR 230 (318)
T ss_dssp CSBCS--SCCCEEEEEEEECCHHHHHHHHHHHBTTBCCCCSSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCCCS
T ss_pred CCCCC--CCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHCCCCHHHHHHHCEEEEEECCCCCCCCCC
T ss_conf 86678--9865130433452166699999999982688776528987501220452345543202788641565566520
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 00036899997599665414887403211345566553100112343763777311000111587656866312311456
Q gi|254781172|r 253 GQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERARSPRWMISHKFAE 332 (731)
Q Consensus 253 ~~~e~l~~L~~~GF~v~~~~~~~~~~~~~~~~~~~~~~~r~~l~y~iDGiVikvn~~~~q~~lG~ts~~PrwaiA~Kf~~ 332 (731)
++.+.+..++.+||+++++...+.+++++..++++|.+.|..++|+|||||||+||+.+|+.||+|+|+||||||||||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~r~~~~y~iDGiVvkvn~~~~~~~lG~ts~~PrwaiA~Kf~a 310 (318)
T 3jsl_A 231 SQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPA 310 (318)
T ss_dssp BHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBTTEEEEECC-
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHCCCCCCCCCEEEECCCH
T ss_conf 08999999986277613451796999999999999997545199888717999818899998098578988758988782
Q ss_pred CEEE
Q ss_conf 2158
Q gi|254781172|r 333 KQAS 336 (731)
Q Consensus 333 e~~~ 336 (731)
||-.
T Consensus 311 eE~~ 314 (318)
T 3jsl_A 311 EEHH 314 (318)
T ss_dssp ----
T ss_pred HHCC
T ss_conf 4415