RPSBLAST alignment for GI: 254781172 and conserved domain: TIGR00575

>gnl|CDD|161936 TIGR00575, dnlj, DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed. Length = 652
 Score =  646 bits (1668), Expect = 0.0
 Identities = 279/699 (39%), Positives = 424/699 (60%), Gaps = 55/699 (7%)

Query: 24  LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
           L + I +HD  YY   +P I D+EYD L R    +    P+L     P+ P  ++G    
Sbjct: 1   LRKLIRHHDYRYYVLDEPSISDAEYDRLYRELQELEEKHPELIT---PDSPTQRVGAAPL 57

Query: 84  LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
               KV HS P LSL+  ++ ++L  FI RI R    K    + + +EPKIDG  +++ Y
Sbjct: 58  SRFPKVRHSTPMLSLDNAFDEDELAAFIKRIRRQLGLK----VEYVVEPKIDGLSVSLTY 113

Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALN 202
           E G  V A  RGDG  GEDV+A +R I +IP  L+  N PE +EVRGEV++ K DF ALN
Sbjct: 114 ENGVLVRALTRGDGTVGEDVTANVRTIRSIPLRLAGDNPPERLEVRGEVFMPKEDFEALN 173

Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQK 260
           +E    G KP+ANPRNAA+G LR+L+P  IT  R L FF +GLG+  E+    QYE L  
Sbjct: 174 EERREQGEKPFANPRNAAAGSLRQLDP-RITAKRKLRFFAYGLGEGLELPDATQYEALAW 232

Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
           ++  GFPV+  +R  ++   ++ YY E++  R +LPY+IDG+V KVD+ +LQ +LG  ++
Sbjct: 233 LKKWGFPVSPHIRLCDSIEEVLEYYREIEEKRDSLPYEIDGVVVKVDDLALQDELGFTSK 292

Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
           +PRW I++KF  ++A T+LLD+ +Q+GRTG +TPVA+LEPV + G  ++ ATLHNED I+
Sbjct: 293 APRWAIAYKFPAEEAQTKLLDVVVQVGRTGAITPVAKLEPVFVAGTTVSRATLHNEDEIE 352

Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
            L           DIR+GD V+V++AG+VIPKVV +++ +R    +P  FP+ CP C S 
Sbjct: 353 EL-----------DIRIGDTVVVRKAGDVIPKVVRVLLEKRTGSERPIRFPTHCPSCGSP 401

Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
           +V+          A  RC   L C AQ++ER+KHF SR+A +IEGLG + ++  F+ +  
Sbjct: 402 LVKIEEE------AVIRCP-NLNCPAQRVERIKHFASRNAMDIEGLGDKVIEQLFEKK-- 452

Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
              +R  AD++ L++       ++E   GFG+ S  NL ++I K +   L R +F+LGIR
Sbjct: 453 --LVRSVADLYALKKED---LLELE---GFGEKSAQNLLNAIEKSKEKPLARLLFALGIR 504

Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
           HVG   A++LAK++ +       ++ + A + ++   L+ V  VG  +A++IV F+ +P 
Sbjct: 505 HVGEVTAKNLAKHFGT-------LDKLKAASLEE---LLSVEGVGPKVAESIVNFFHDPN 554

Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQEYVTQLGA 675
           N   ++  L+E+   +    + V++E+       K  V TGTL ++ R +A+E +  LG 
Sbjct: 555 NRQLIKK-LEELGVEMESLPEKVNAELAGSPLAGKTFVLTGTLSQMSRDEAKELLENLGG 613

Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
            V++ +S+KTD +I G+  GSKL KAQ+LG+ I+NEE+ 
Sbjct: 614 KVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEEL 652