RPSBLAST alignment for GI: 254781172 and conserved domain: TIGR00575
>gnl|CDD|161936 TIGR00575, dnlj, DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed. Length = 652
Score = 646 bits (1668), Expect = 0.0
Identities = 279/699 (39%), Positives = 424/699 (60%), Gaps = 55/699 (7%)
Query: 24 LEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARSEDPNGPLNKIGGEMN 83
L + I +HD YY +P I D+EYD L R + P+L P+ P ++G
Sbjct: 1 LRKLIRHHDYRYYVLDEPSISDAEYDRLYRELQELEEKHPELIT---PDSPTQRVGAAPL 57
Query: 84 LSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQKKDDNSIFFTLEPKIDGTMITIRY 143
KV HS P LSL+ ++ ++L FI RI R K + + +EPKIDG +++ Y
Sbjct: 58 SRFPKVRHSTPMLSLDNAFDEDELAAFIKRIRRQLGLK----VEYVVEPKIDGLSVSLTY 113
Query: 144 EKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSL-NIPEIIEVRGEVYISKNDFLALN 202
E G V A RGDG GEDV+A +R I +IP L+ N PE +EVRGEV++ K DF ALN
Sbjct: 114 ENGVLVRALTRGDGTVGEDVTANVRTIRSIPLRLAGDNPPERLEVRGEVFMPKEDFEALN 173
Query: 203 DEMIAVGRKPYANPRNAASGILRRLNPTDIT--RYLNFFVHGLGKTSEIFAKGQYEMLQK 260
+E G KP+ANPRNAA+G LR+L+P IT R L FF +GLG+ E+ QYE L
Sbjct: 174 EERREQGEKPFANPRNAAAGSLRQLDP-RITAKRKLRFFAYGLGEGLELPDATQYEALAW 232
Query: 261 MRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYKVDEFSLQKQLGERAR 320
++ GFPV+ +R ++ ++ YY E++ R +LPY+IDG+V KVD+ +LQ +LG ++
Sbjct: 233 LKKWGFPVSPHIRLCDSIEEVLEYYREIEEKRDSLPYEIDGVVVKVDDLALQDELGFTSK 292
Query: 321 SPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEPVNIGGALITNATLHNEDYIK 380
+PRW I++KF ++A T+LLD+ +Q+GRTG +TPVA+LEPV + G ++ ATLHNED I+
Sbjct: 293 APRWAIAYKFPAEEAQTKLLDVVVQVGRTGAITPVAKLEPVFVAGTTVSRATLHNEDEIE 352
Query: 381 GLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNERHPDAQPFSFPSFCPICQSR 440
L DIR+GD V+V++AG+VIPKVV +++ +R +P FP+ CP C S
Sbjct: 353 EL-----------DIRIGDTVVVRKAGDVIPKVVRVLLEKRTGSERPIRFPTHCPSCGSP 401
Query: 441 VVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDAFNIEGLGKQQLDFFFKSEDP 500
+V+ A RC L C AQ++ER+KHF SR+A +IEGLG + ++ F+ +
Sbjct: 402 LVKIEEE------AVIRCP-NLNCPAQRVERIKHFASRNAMDIEGLGDKVIEQLFEKK-- 452
Query: 501 AFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYDSINKRRNISLERFIFSLGIR 560
+R AD++ L++ ++E GFG+ S NL ++I K + L R +F+LGIR
Sbjct: 453 --LVRSVADLYALKKED---LLELE---GFGEKSAQNLLNAIEKSKEKPLARLLFALGIR 504
Query: 561 HVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIRVPLVGDIIAQAIVEFYQNPR 620
HVG A++LAK++ + ++ + A + ++ L+ V VG +A++IV F+ +P
Sbjct: 505 HVGEVTAKNLAKHFGT-------LDKLKAASLEE---LLSVEGVGPKVAESIVNFFHDPN 554
Query: 621 NICAVEALLKEVSPSIGRHEKNVSSEIEN-----KKLVFTGTLQKIQRHKAQEYVTQLGA 675
N ++ L+E+ + + V++E+ K V TGTL ++ R +A+E + LG
Sbjct: 555 NRQLIKK-LEELGVEMESLPEKVNAELAGSPLAGKTFVLTGTLSQMSRDEAKELLENLGG 613
Query: 676 VVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQF 714
V++ +S+KTD +I G+ GSKL KAQ+LG+ I+NEE+
Sbjct: 614 KVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEEL 652