BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] (731 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 1509 bits (3907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 731/731 (100%), Positives = 731/731 (100%) Query: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH Sbjct: 1 MKKRQLIPIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAH 60 Query: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK Sbjct: 61 AFPDLARSEDPNGPLNKIGGEMNLSLFKVTHSIPTLSLEKIWNIEDLRKFITRIYRFWQK 120 Query: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN Sbjct: 121 KDDNSIFFTLEPKIDGTMITIRYEKGKFVYAALRGDGHSGEDVSACIRAIPTIPRVLSLN 180 Query: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV Sbjct: 181 IPEIIEVRGEVYISKNDFLALNDEMIAVGRKPYANPRNAASGILRRLNPTDITRYLNFFV 240 Query: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID Sbjct: 241 HGLGKTSEIFAKGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDID 300 Query: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP Sbjct: 301 GLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPVARLEP 360 Query: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE Sbjct: 361 VNIGGALITNATLHNEDYIKGLDASGKVMRGGRDIRVGDRVLVKRAGEVIPKVVDIIVNE 420 Query: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA Sbjct: 421 RHPDAQPFSFPSFCPICQSRVVRDLNPKTGKLVAAHRCTGGLACSAQQLERLKHFVSRDA 480 Query: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD Sbjct: 481 FNIEGLGKQQLDFFFKSEDPAFSIRIPADIFTLQRRQQTSTTKIENILGFGDVSVTNLYD 540 Query: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR Sbjct: 541 SINKRRNISLERFIFSLGIRHVGAEIARSLAKYYLSYQNFAQEINNIIAHNNDDWLSLIR 600 Query: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK Sbjct: 601 VPLVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQK 660 Query: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ Sbjct: 661 IQRHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMNEEQFLFLLQQ 720 Query: 721 YNTTLRIHDDD 731 YNTTLRIHDDD Sbjct: 721 YNTTLRIHDDD 731 >gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] Length = 119 Score = 40.4 bits (93), Expect = 9e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L Sbjct: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-- 108 Query: 69 EDPNGPLNKIG 79 D + P N +G Sbjct: 109 -DEDHPWNTVG 118 >gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] Length = 119 Score = 40.4 bits (93), Expect = 1e-04, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68 + +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L Sbjct: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELF-- 108 Query: 69 EDPNGPLNKIG 79 D + P N +G Sbjct: 109 -DEDHPWNTVG 118 >gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 31.2 bits (69), Expect = 0.070, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 11/108 (10%) Query: 603 LVGDIIAQAIVEFYQNPRNICAVEALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQ 662 L GD+I +++ E P N+ V PS+ ++ + S + +L G +Q + Sbjct: 18 LAGDLI-KSLKEMVSYPINLVGVGG------PSL--QKEGLVSLFDFSELSVIGIMQVV- 67 Query: 663 RHKAQEYVTQLGAVVSAILSRKTDIIIVGDNPGSKLEKAQQLGVKIMN 710 RH Q ++ ++ V I+S K D++++ DNP A+++ K+ N Sbjct: 68 RHLPQ-FIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPN 114 >gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 30.0 bits (66), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 17/139 (12%) Query: 242 GLGKTSEIFA-KGQYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMK-SIRSTLPYDI 299 G K SE FA + YE+++KM ++N FH +Y E + +P + Sbjct: 236 GFQKFSEQFASRSFYEIIKKMSF--------SNKSNIFH---NYRAETQFYFLIVIPLML 284 Query: 300 DGLVYKVDEFSLQKQLGERARSPRWMISHKFAEKQASTRLLDIDIQIGRTGILTPV-ARL 358 + SL+ R+ PR ++++ ++ I G++GIL PV A L Sbjct: 285 VAMTLIAASVSLE---FSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAAL 341 Query: 359 EPVNIGGALITNATLHNED 377 PV + +L L ED Sbjct: 342 IPVILTISLSILILLQKED 360 >gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 25.4 bits (54), Expect = 3.0, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 401 VLVKRAGEVIPKVVDIIVNERHPDAQPF 428 V++++ GEV+ ++I H DA PF Sbjct: 250 VVLQKIGEVLAHSTEVISIRGHTDASPF 277 >gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 24.6 bits (52), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 170 IPTIPRVLSLNIPEIIEVRGEVYISKNDFLALNDEMIAV-GRKPYANPRNAASGI 223 I I R+LS IIE VY + + +N+ IA+ G P+A NA GI Sbjct: 176 IADICRILSTK--RIIETSDTVYNAMKKYFGINNPRIAISGLNPHAG-ENATIGI 227 >gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 24.3 bits (51), Expect = 6.7, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 44 LDSEYDALKRRCDAIAHAFPDLARSEDPN 72 L + +DA + D +AH L R E P+ Sbjct: 272 LHTSFDAYEAHTDTLAHGVDSLVRGEYPH 300 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.138 0.400 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 467,407 Number of Sequences: 1233 Number of extensions: 20162 Number of successful extensions: 57 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 8 length of query: 731 length of database: 328,796 effective HSP length: 81 effective length of query: 650 effective length of database: 228,923 effective search space: 148799950 effective search space used: 148799950 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 42 (20.8 bits)