HHsearch alignment for GI: 254781174 and conserved domain: CHL00033

>CHL00033 ycf3 photosystem I assembly protein Ycf3.
Probab=98.83  E-value=7.5e-08  Score=63.85  Aligned_cols=122  Identities=10%  Similarity=0.019  Sum_probs=93.5

Q ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r   56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY  135 (271)
Q Consensus        56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y  135 (271)
T Consensus        30 ~af~yyr~GmsaQs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~nGe~~kALeyY~qALeiNP~~pq---A~N  106 (165)
T CHL00033         30 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ---ALN  106 (165)
T ss_pred             HHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHH
T ss_conf             89999981510101353899999999862345685126689989999999858888999999999985999689---997


Q ss_pred             HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             434445555443------11123458999999999998520010134565555
Q gi|254781174|r  136 LVGMSYAQMIRD------VPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV  182 (271)
Q Consensus       136 ~~a~~~~~~~~~------~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l  182 (271)
T Consensus       107 NlGvIyh~qG~~a~~~~~~~~~~~~fd~aa~~w~~ai~lap~n-y-~eaqnwl  157 (165)
T CHL00033        107 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN-Y-IEAQNWL  157 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC-C-HHHHHHH
T ss_conf             8999999987999984586789999999999999987038997-0-9999999