HHsearch alignment for GI: 254781174 and conserved domain: CHL00033
>CHL00033 ycf3 photosystem I assembly protein Ycf3.
Probab=98.83 E-value=7.5e-08 Score=63.85 Aligned_cols=122 Identities=10% Similarity=0.019 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
T Consensus 30 ~af~yyr~GmsaQs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~nGe~~kALeyY~qALeiNP~~pq---A~N 106 (165)
T CHL00033 30 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ---ALN 106 (165)
T ss_pred HHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHH
T ss_conf 89999981510101353899999999862345685126689989999999858888999999999985999689---997
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 434445555443------11123458999999999998520010134565555
Q gi|254781174|r 136 LVGMSYAQMIRD------VPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV 182 (271)
Q Consensus 136 ~~a~~~~~~~~~------~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l 182 (271)
T Consensus 107 NlGvIyh~qG~~a~~~~~~~~~~~~fd~aa~~w~~ai~lap~n-y-~eaqnwl 157 (165)
T CHL00033 107 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN-Y-IEAQNWL 157 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC-C-HHHHHHH
T ss_conf 8999999987999984586789999999999999987038997-0-9999999