HHsearch alignment for GI: 254781174 and conserved domain: CHL00033
>CHL00033 ycf3 photosystem I assembly protein Ycf3.
Probab=98.45 E-value=4e-06 Score=53.81 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=100.1
Q ss_pred HHHHCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9853047730268--99877887765455567999998875401121101355544344455554431112345899999
Q gi|254781174|r 83 CSRDFPFAGVARK--SLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQ 160 (271)
Q Consensus 83 i~~~~P~s~~a~~--A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~ 160 (271)
T Consensus 18 ~~k~~p~~~~~k~af~yyr~GmsaQs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~n--------Ge~~kALe 89 (165)
T CHL00033 18 LLKILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN--------GEHTKALE 89 (165)
T ss_pred HHHHCCCCCCHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC--------CCHHHHHH
T ss_conf 9998088842288999998151010135389999999986234568512668998999999985--------88889999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999852001013456555555566666665556666654432234568999886528998
Q gi|254781174|r 161 YMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDA 223 (271)
Q Consensus 161 ~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t 223 (271)
T Consensus 90 yY~qALeiNP~~---pqA~NNlGvIyh~qG~~a~~~~~~~~~~~~fd~aa~~w~~ai~lap~n 149 (165)
T CHL00033 90 YYFQALERNPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 149 (165)
T ss_pred HHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999859996---899978999999987999984586789999999999999987038997