HHsearch alignment for GI: 254781174 and conserved domain: COG3063
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.58 E-value=1.6e-12 Score=91.11 Aligned_cols=210 Identities=14% Similarity=0.110 Sum_probs=147.3
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999972268753334456777673689999999999980989999999999985304773026899877887765455
Q gi|254781174|r 30 IAVCFLVGWERQSSRDVYLDSVTDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGK 109 (271)
Q Consensus 30 i~~~~l~~Cs~~~~~~~~~~~~~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~ 109 (271)
T Consensus 11 v~~La~~~cvt~~~~~~---~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~---~a~~~~A~~Yq~~Ge 84 (250)
T COG3063 11 VFSLALGACVTDPAPSR---QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY---LAHLVRAHYYQKLGE 84 (250)
T ss_pred HHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCC
T ss_conf 99876320058997533---225889999999999999977899999988999988495208---899999999999077
Q ss_pred HHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHH--------HHHH---------------HHHHHHHHHHHHHHHH
Q ss_conf 5679999988754011211013--5554434445555--------4431---------------1123458999999999
Q gi|254781174|r 110 YQQAASLGEEYITQYPESKNVD--YVYYLVGMSYAQM--------IRDV---------------PYDQRATKLMLQYMSR 164 (271)
Q Consensus 110 y~~A~~~~~~fi~~~P~s~~~~--~A~y~~a~~~~~~--------~~~~---------------~~d~~~~~~A~~~f~~ 164 (271)
T Consensus 85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 85 NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 55679999999852988640552106999708986899999999871888777530454457888643770447999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99852001013456555555566666665556666654432234568999886528998115999999999999749879
Q gi|254781174|r 165 IVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMD 244 (271)
Q Consensus 165 ~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d 244 (271)
T Consensus 165 aL~~dp~~~~~-----------------~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 165 ALELDPQFPPA-----------------LLELARLHYKAGDYAPARLYLERYQQRGG---AQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHHHCCCCCHH-----------------HHHHHHHHHHCCCCHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHCCHH
T ss_conf 98837578767-----------------89987988753130189999999970256---65899998999999965488
Q ss_pred HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 999999999785699978999
Q gi|254781174|r 245 EAREVVSLIQERYPQGYWARY 265 (271)
Q Consensus 245 ~A~~~~~~l~~~yP~s~~~~~ 265 (271)
T Consensus 225 ~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 225 AAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999999986899677776