HHsearch alignment for GI: 254781174 and conserved domain: COG4105

>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=99.66  E-value=1.4e-14  Score=103.07  Aligned_cols=165  Identities=16%  Similarity=0.167  Sum_probs=94.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q ss_conf             7673689999999999980989999999999985304773026899877887765455--------56799999887540
Q gi|254781174|r   52 TDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGK--------YQQAASLGEEYITQ  123 (271)
Q Consensus        52 ~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~--------y~~A~~~~~~fi~~  123 (271)
T Consensus        66 ~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r  145 (254)
T COG4105          66 FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR  145 (254)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             98112899999999988135589999999999987899987169999999987526775444779999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1121101355544344455------5544311123458999999999998520010134565555555666666655566
Q gi|254781174|r  124 YPESKNVDYVYYLVGMSYA------QMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIG  197 (271)
Q Consensus       124 ~P~s~~~~~A~y~~a~~~~------~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia  197 (271)
T Consensus       146 yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l--------------~  211 (254)
T COG4105         146 YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARL--------------E  211 (254)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH--------------H
T ss_conf             88970235599999999999889999999999990576999999999987145552047789999--------------9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             666544322345689998865289981159999
Q gi|254781174|r  198 RYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAM  230 (271)
Q Consensus       198 ~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl  230 (271)
T Consensus       212 eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~~~~  244 (254)
T COG4105         212 EAYYALGLTDEAKKTAKVLGANYPDSQWYKDAY  244 (254)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             999982872789999999973689882035666