HHsearch alignment for GI: 254781174 and conserved domain: COG4105
>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=99.66 E-value=1.4e-14 Score=103.07 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=94.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q ss_conf 7673689999999999980989999999999985304773026899877887765455--------56799999887540
Q gi|254781174|r 52 TDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGK--------YQQAASLGEEYITQ 123 (271)
Q Consensus 52 ~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~--------y~~A~~~~~~fi~~ 123 (271)
T Consensus 66 ~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r 145 (254)
T COG4105 66 FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR 145 (254)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98112899999999988135589999999999987899987169999999987526775444779999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1121101355544344455------5544311123458999999999998520010134565555555666666655566
Q gi|254781174|r 124 YPESKNVDYVYYLVGMSYA------QMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIG 197 (271)
Q Consensus 124 ~P~s~~~~~A~y~~a~~~~------~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia 197 (271)
T Consensus 146 yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l--------------~ 211 (254)
T COG4105 146 YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARL--------------E 211 (254)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH--------------H
T ss_conf 88970235599999999999889999999999990576999999999987145552047789999--------------9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 666544322345689998865289981159999
Q gi|254781174|r 198 RYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAM 230 (271)
Q Consensus 198 ~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl 230 (271)
T Consensus 212 eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~~~~ 244 (254)
T COG4105 212 EAYYALGLTDEAKKTAKVLGANYPDSQWYKDAY 244 (254)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 999982872789999999973689882035666