HHsearch alignment for GI: 254781174 and conserved domain: COG4785
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only].
Probab=98.82 E-value=7.3e-07 Score=58.11 Aligned_cols=183 Identities=16% Similarity=0.147 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m---~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~lN 138 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLN 138 (297)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC---HHHHHC
T ss_conf 8998861203422407999860145666349675---8999899999986022057999866671047751---077760
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH------HHHHHHHHHHHHHH---------HHHHHHHH
Q ss_conf 3444555544311123458999999999998520010134565------55555566666665---------55666665
Q gi|254781174|r 137 VGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGAR------FYVTVGRNQLAAKE---------VEIGRYYL 201 (271)
Q Consensus 137 ~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~------~~l~~~~~~La~~e---------~~ia~~Y~ 201 (271)
T Consensus 139 Rgi~~YY~--------gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL 210 (297)
T COG4785 139 RGIALYYG--------GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL 210 (297)
T ss_pred CCEEEEEC--------CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 44023444--------7515559999999844989807899999876107868999999999870567655187999997
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 443223456899988652899811---599999999999974987999999999978
Q gi|254781174|r 202 KRGEYVAAIPRFQLVLANYSDAEH---AEEAMARLVEAYVALALMDEAREVVSLIQE 255 (271)
Q Consensus 202 ~~~~y~aA~~~~~~~i~~yp~t~~---~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~ 255 (271)
T Consensus 211 gkiS~e~l~~~~~a~a~~--n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 211 GKISEETLMERLKADATD--NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 040399999999863121--2899999999999999998613117889999999998