HHsearch alignment for GI: 254781174 and conserved domain: TIGR02521
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=99.75 E-value=4.8e-16 Score=111.63 Aligned_cols=207 Identities=16% Similarity=0.158 Sum_probs=155.9
Q ss_pred HHHHHHHHHCCCCC------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999997226875------333445677767368999999999998098999999999998530477302689987788
Q gi|254781174|r 29 SIAVCFLVGWERQS------SRDVYLDSVTDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAF 102 (271)
Q Consensus 29 ~i~~~~l~~Cs~~~------~~~~~~~~~~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~ 102 (271)
T Consensus 3 l~~~~~l~GC~~~~P~~q~~~~~~~~~~~~~~~~a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~---~a~~~lA~ 79 (247)
T TIGR02521 3 LVLLLALTGCVTTPPTVQEQEVPESSRTTDREKAAKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDY---DAYLALAL 79 (247)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC---HHHHHHHH
T ss_conf 878467851578878977878888755102799999999999999860787899999999987376661---28999999
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH------------------------------HHHHH
Q ss_conf 776545--5567999998875401121101355544344455554------------------------------43111
Q gi|254781174|r 103 VQYSAG--KYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMI------------------------------RDVPY 150 (271)
Q Consensus 103 ~~y~~~--~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~------------------------------~~~~~ 150 (271)
T Consensus 80 ~Yq~~grP~~~~A~~~f~~Al~~~p~~g~~---~NNYG~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~~~~~~eN~G~C~~ 156 (247)
T TIGR02521 80 YYQQLGRPELEKAEQSFRKALTLKPNNGDV---LNNYGTFLCQQGNDKYEQAEQQFEAAIEDPLYPQPARSYENAGLCAL 156 (247)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCCE---ECHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 998717995578999999986248998523---20145776404897068999999999866889733024554999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 23458999999999998520010134565555555666666655566666544322345689998865289981159999
Q gi|254781174|r 151 DQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAM 230 (271)
Q Consensus 151 d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl 230 (271)
T Consensus 157 ~~g~~~~A~~~l~~Al~~dp~~p-----------------~~lleLa~l~~~~g~~~~A~~~l~ry~~~~G~~~~~a~sL 219 (247)
T TIGR02521 157 KAGDTEKAEKYLTRALKIDPQRP-----------------ESLLELAELYYERGQYAQARALLERYQQTVGVKNQTAESL 219 (247)
T ss_pred HCCCHHHHHHHHHHHHHHCCCCC-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 61786889999999998587888-----------------5579999998750772899999999998736788887347
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999974987999999999978569
Q gi|254781174|r 231 ARLVEAYVALALMDEAREVVSLIQERYP 258 (271)
Q Consensus 231 ~~l~~~y~~lg~~d~A~~~~~~l~~~yP 258 (271)
T Consensus 220 ~Lg~riA~~~Gd~~~~~~y~~qL~~~fP 247 (247)
T TIGR02521 220 WLGIRIARALGDVAAAKRYGAQLQKLFP 247 (247)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCC
T ss_conf 8999999984429999999998500279