HHsearch alignment for GI: 254781174 and conserved domain: TIGR02521
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=98.98 E-value=2.1e-08 Score=67.10 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 302689987788776545556799999887540112110135554434445555443111234--589999999999985
Q gi|254781174|r 91 GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQR--ATKLMLQYMSRIVER 168 (271)
Q Consensus 91 ~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~--~~~~A~~~f~~~i~~ 168 (271)
T Consensus 34 ~~~a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~~---a~~~lA~~Yq~--------~grP~~~~A~~~f~~Al~~ 102 (247)
T TIGR02521 34 EKAAKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDYD---AYLALALYYQQ--------LGRPELEKAEQSFRKALTL 102 (247)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999998607878999999999873766612---89999999987--------1799557899999998624
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 200101345655555556666666555666665443--223456899988652899811599999999999974987999
Q gi|254781174|r 169 YTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRG--EYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEA 246 (271)
Q Consensus 169 yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~--~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A 246 (271)
T Consensus 103 ~p~~g~~---~N--------------NYG~FLC~~g~~~~~~A~~~F~~A~~~-p~Y~~~~~~~eN~G~C~~~~g~~~~A 164 (247)
T TIGR02521 103 KPNNGDV---LN--------------NYGTFLCQQGNDKYEQAEQQFEAAIED-PLYPQPARSYENAGLCALKAGDTEKA 164 (247)
T ss_pred CCCCCCE---EC--------------HHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 8998523---20--------------145776404897068999999999866-88973302455499999861786889
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999997856999
Q gi|254781174|r 247 REVVSLIQERYPQG 260 (271)
Q Consensus 247 ~~~~~~l~~~yP~s 260 (271)
T Consensus 165 ~~~l~~Al~~dp~~ 178 (247)
T TIGR02521 165 EKYLTRALKIDPQR 178 (247)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999858788