HHsearch alignment for GI: 254781174 and conserved domain: TIGR02521

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=98.98  E-value=2.1e-08  Score=67.10  Aligned_cols=141  Identities=14%  Similarity=0.149  Sum_probs=118.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf             302689987788776545556799999887540112110135554434445555443111234--589999999999985
Q gi|254781174|r   91 GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQR--ATKLMLQYMSRIVER  168 (271)
Q Consensus        91 ~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~--~~~~A~~~f~~~i~~  168 (271)
T Consensus        34 ~~~a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~~---a~~~lA~~Yq~--------~grP~~~~A~~~f~~Al~~  102 (247)
T TIGR02521        34 EKAAKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDYD---AYLALALYYQQ--------LGRPELEKAEQSFRKALTL  102 (247)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHC
T ss_conf             999999999999998607878999999999873766612---89999999987--------1799557899999998624


Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             200101345655555556666666555666665443--223456899988652899811599999999999974987999
Q gi|254781174|r  169 YTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRG--EYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEA  246 (271)
Q Consensus       169 yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~--~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A  246 (271)
T Consensus       103 ~p~~g~~---~N--------------NYG~FLC~~g~~~~~~A~~~F~~A~~~-p~Y~~~~~~~eN~G~C~~~~g~~~~A  164 (247)
T TIGR02521       103 KPNNGDV---LN--------------NYGTFLCQQGNDKYEQAEQQFEAAIED-PLYPQPARSYENAGLCALKAGDTEKA  164 (247)
T ss_pred             CCCCCCE---EC--------------HHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf             8998523---20--------------145776404897068999999999866-88973302455499999861786889


Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             99999997856999
Q gi|254781174|r  247 REVVSLIQERYPQG  260 (271)
Q Consensus       247 ~~~~~~l~~~yP~s  260 (271)
T Consensus       165 ~~~l~~Al~~dp~~  178 (247)
T TIGR02521       165 EKYLTRALKIDPQR  178 (247)
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             99999999858788