HHsearch alignment for GI: 254781174 and conserved domain: TIGR02795
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=99.83 E-value=1.3e-19 Score=132.55 Aligned_cols=117 Identities=21% Similarity=0.391 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55544344455554431112345899999999999852001013456555555566666665556666654432234568
Q gi|254781174|r 132 YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIP 211 (271)
Q Consensus 132 ~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~ 211 (271)
T Consensus 3 ~~~y~aa~~~lk--------~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWL--------------Ge~~y~~~~~~~A~~ 60 (119)
T TIGR02795 3 EAYYDAALLVLK--------AGDYADAIQAFQAFLKKYPKSTYAPNAHYWL--------------GEAYYAQGDYADAAK 60 (119)
T ss_pred HHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH--------------HHHHHHHHHHHHHHH
T ss_conf 678999999985--------3887899999999988687987671054799--------------999999733999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99988652899811599999999999974987999999999978569997899999860
Q gi|254781174|r 212 RFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVETLV 270 (271)
Q Consensus 212 ~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~l 270 (271)
T Consensus 61 ~f~~v~~~yp~s~KaPdALLKlg~~~~~~g~~~~A~~~l~~V~~~YP~s~aA~~A~~~l 119 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKRL 119 (119)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 99999864589986068999999999872898899999999985669987889997509