HHsearch alignment for GI: 254781174 and conserved domain: TIGR02795

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=99.83  E-value=1.3e-19  Score=132.55  Aligned_cols=117  Identities=21%  Similarity=0.391  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55544344455554431112345899999999999852001013456555555566666665556666654432234568
Q gi|254781174|r  132 YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIP  211 (271)
Q Consensus       132 ~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~  211 (271)
T Consensus         3 ~~~y~aa~~~lk--------~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWL--------------Ge~~y~~~~~~~A~~   60 (119)
T TIGR02795         3 EAYYDAALLVLK--------AGDYADAIQAFQAFLKKYPKSTYAPNAHYWL--------------GEAYYAQGDYADAAK   60 (119)
T ss_pred             HHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH--------------HHHHHHHHHHHHHHH
T ss_conf             678999999985--------3887899999999988687987671054799--------------999999733999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99988652899811599999999999974987999999999978569997899999860
Q gi|254781174|r  212 RFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVETLV  270 (271)
Q Consensus       212 ~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~l  270 (271)
T Consensus        61 ~f~~v~~~yp~s~KaPdALLKlg~~~~~~g~~~~A~~~l~~V~~~YP~s~aA~~A~~~l  119 (119)
T TIGR02795        61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKRL  119 (119)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             99999864589986068999999999872898899999999985669987889997509