HHsearch alignment for GI: 254781174 and conserved domain: TIGR03042
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=92.12 E-value=0.71 Score=23.19 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999972268753
Q gi|254781174|r 21 KFALTIFFSIAVCFLVGWERQSS 43 (271)
Q Consensus 21 k~~~~i~~~i~~~~l~~Cs~~~~ 43 (271)
T Consensus 2 Rsi~s~~L~~~~~fLvsC~gp~a 24 (142)
T TIGR03042 2 RSLASLLLVLLLTFLVSCSGPAA 24 (142)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 76999999999999988389988