HHsearch alignment for GI: 254781174 and conserved domain: TIGR03302
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=100.00 E-value=0 Score=376.20 Aligned_cols=233 Identities=35% Similarity=0.606 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999972268753334456777673689999999999980989999999999985304773026899877887
Q gi|254781174|r 24 LTIFFSIAVCFLVGWERQSSRDVYLDSVTDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFV 103 (271)
Q Consensus 24 ~~i~~~i~~~~l~~Cs~~~~~~~~~~~~~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~ 103 (271)
T Consensus 3 ~~~~~~~~~~~l~sCs~~~~~~---~~~~~~~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a 79 (235)
T TIGR03302 3 LLILLLALLLLLAGCSSKKKKE---ADPVEERPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYA 79 (235)
T ss_pred HHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999999998738997665---5555578999999999999987899999999999998689931379999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 76545556799999887540112110135554434445555443111234589999999999985200101345655555
Q gi|254781174|r 104 QYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVT 183 (271)
Q Consensus 104 ~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~ 183 (271)
T Consensus 80 ~y~~~~y~~A~~~~~~Fi~~yP~~~~~~ya~y~~a~s~~~~~~~~~rDq~~~~~A~~~f~~~i~~yP~S~ya~dA~~~i~ 159 (235)
T TIGR03302 80 YYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYKQIDDSDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD 159 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99764399999999999998877434999999987998873665445808999999999999988899657999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 5566666665556666654432234568999886528998115999999999999749879999999999785699
Q gi|254781174|r 184 VGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQ 259 (271)
Q Consensus 184 ~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~ 259 (271)
T Consensus 160 ~l~~~LA~~e~~ia~~Y~k~~~y~aAi~r~~~vl~~Yp~t~~~~eAl~~l~eay~~lg~~~~A~~~~~~l~~n~p~ 235 (235)
T TIGR03302 160 YLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLALGLTDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999998417099999999999868998513999999999999869989999999999753989