HHsearch alignment for GI: 254781174 and conserved domain: TIGR03302
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.86 E-value=5.5e-20 Score=134.63 Aligned_cols=165 Identities=17% Similarity=0.161 Sum_probs=137.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30268998778877654555679999988754011211013555443444555544311123458999999999998520
Q gi|254781174|r 91 GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYT 170 (271)
Q Consensus 91 ~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP 170 (271)
T Consensus 30 ~~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~--------~~y~~A~~~~~~Fi~~yP 101 (235)
T TIGR03302 30 ERPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS--------GDYAEAIAAADRFIRLHP 101 (235)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCC
T ss_conf 789999999999999878999999999999986899313799999999999976--------439999999999999887
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--------------HHH
Q ss_conf 010134565555555666666655566666544322345689998865289981159999999--------------999
Q gi|254781174|r 171 NSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARL--------------VEA 236 (271)
Q Consensus 171 ~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l--------------~~~ 236 (271)
T Consensus 102 ~~~~~~ya~y~~a~s~~~~------~~~~~rDq~~~~~A~~~f~~~i~~yP~S~ya~dA~~~i~~l~~~LA~~e~~ia~~ 175 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYKQ------IDDSDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred CCCHHHHHHHHHHHHHHHH------CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7434999999987998873------6654458089999999999999888996579999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 997498799999999997856999789999986
Q gi|254781174|r 237 YVALALMDEAREVVSLIQERYPQGYWARYVETL 269 (271)
Q Consensus 237 y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~ 269 (271)
T Consensus 176 Y~k~~~y~aAi~r~~~vl~~Yp~t~~~~eAl~~ 208 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALAR 208 (235)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 998417099999999999868998513999999