HHsearch alignment for GI: 254781174 and conserved domain: TIGR03302

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.86  E-value=5.5e-20  Score=134.63  Aligned_cols=165  Identities=17%  Similarity=0.161  Sum_probs=137.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             30268998778877654555679999988754011211013555443444555544311123458999999999998520
Q gi|254781174|r   91 GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYT  170 (271)
Q Consensus        91 ~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP  170 (271)
T Consensus        30 ~~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~--------~~y~~A~~~~~~Fi~~yP  101 (235)
T TIGR03302        30 ERPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS--------GDYAEAIAAADRFIRLHP  101 (235)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCC
T ss_conf             789999999999999878999999999999986899313799999999999976--------439999999999999887


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--------------HHH
Q ss_conf             010134565555555666666655566666544322345689998865289981159999999--------------999
Q gi|254781174|r  171 NSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARL--------------VEA  236 (271)
Q Consensus       171 ~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l--------------~~~  236 (271)
T Consensus       102 ~~~~~~ya~y~~a~s~~~~------~~~~~rDq~~~~~A~~~f~~~i~~yP~S~ya~dA~~~i~~l~~~LA~~e~~ia~~  175 (235)
T TIGR03302       102 NHPDADYAYYLRGLSNYKQ------IDDSDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             CCCHHHHHHHHHHHHHHHH------CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7434999999987998873------6654458089999999999999888996579999999999999999999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             997498799999999997856999789999986
Q gi|254781174|r  237 YVALALMDEAREVVSLIQERYPQGYWARYVETL  269 (271)
Q Consensus       237 y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~  269 (271)
T Consensus       176 Y~k~~~y~aAi~r~~~vl~~Yp~t~~~~eAl~~  208 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYPDTPATEEALAR  208 (235)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             998417099999999999868998513999999