>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.

Probab=98.86 E-value=1.8e-08 Score=67.42 Aligned_cols=99 Identities=21% Similarity=0.330 Sum_probs=75.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 99877887765455567999998875401121101355544344455554431112345899999999999852001013 Q gi|254781174|r 96 SLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYV 175 (271) Q Consensus 96 A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya 175 (271) T Consensus 2 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~-- 68 (100) T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---DAYYNLAAAYYKL--------GKYEEALEDYEKALELDPDNA-- 68 (100) T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCH-- T ss_conf 899999999984999999999999998599989---9999999999985--------985899999999998698989-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 45655555556666666555666665443223456899988652899 Q gi|254781174|r 176 KGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSD 222 (271) Q Consensus 176 ~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~ 222 (271) T Consensus 69 -~~~--------------~~la~~~~~~~~~~~A~~~~~~al~~~P~ 100 (100) T cd00189 69 -KAY--------------YNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100) T ss_pred -HHH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf -999--------------99999999949999999999999974908

HHsearch alignment for GI: 254781174 and conserved domain: cd00189