HHsearch alignment for GI: 254781174 and conserved domain: pfam04733

>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=98.72  E-value=1e-05  Score=51.46  Aligned_cols=174  Identities=11%  Similarity=0.141  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r   57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL  136 (271)
Q Consensus        57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~  136 (271)
T Consensus       102 ~~~~~~aati~~~~g~~e~AL~~l~~~--------~~lE~~al~VQi~L~~nR~DLA~ke~~~~q~~~eDs~l-----~q  168 (290)
T pfam04733       102 STLRLLAAIIFIHEGDFDDALKHLHKG--------ENLEAMALNVQILLKMHRIDLAEQQLKKMQQIDEDATL-----TQ  168 (290)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH-----HH
T ss_conf             899999999999779999999998558--------96679999999999728836799999998843510599-----99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34445555443111234589999999999985200101345655555556666666555666665443223456899988
Q gi|254781174|r  137 VGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLV  216 (271)
Q Consensus       137 ~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~  216 (271)
T Consensus       169 La~awv~l~----~Ggek~q~A~yif~EL~~~~~~t~llln-----------------g~Av~~m~~~~~~eAe~~L~eA  227 (290)
T pfam04733       169 LANAWVKLA----VGGEKIQDAYYIFQEFSEKYDSTPLLLN-----------------GQAVCCMCLGRYEEAESLLKEA  227 (290)
T ss_pred             HHHHHHHHH----HCCHHHHHHHHHHHHHHHHCCCCHHHHH-----------------HHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999999997----2647789899999999852289789999-----------------9999998747879999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             65289981159999999999997498799-9999999978569997899999
Q gi|254781174|r  217 LANYSDAEHAEEAMARLVEAYVALALMDE-AREVVSLIQERYPQGYWARYVE  267 (271)
Q Consensus       217 i~~yp~t~~~~eAl~~l~~~y~~lg~~d~-A~~~~~~l~~~yP~s~~~~~a~  267 (271)
T Consensus       228 l~~d~~d---~dtlaNliv~s~~~gK~~e~~~ryl~qL~~~~p~H~~v~~~~  276 (290)
T pfam04733       228 LDKDAKD---PETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLN  276 (290)
T ss_pred             HHHCCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             8728898---899999999999809987899999999986299985999999