HHsearch alignment for GI: 254781174 and conserved domain: pfam10602
>pfam10602 RPN7 26S proteasome subunit RPN7. RPN7 (known as the non ATPase regulatory subunit 6 in higher eukaryotes) is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae to be required for structural integrity. The 26S proteasome is is involved in the ATP-dependent degradation of ubiquitinated proteins.
Probab=93.70 E-value=0.42 Score=24.53 Aligned_cols=119 Identities=13% Similarity=-0.003 Sum_probs=67.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04773026899877887765455567999998875401121101355544-34445555443111234589999999999
Q gi|254781174|r 87 FPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL-VGMSYAQMIRDVPYDQRATKLMLQYMSRI 165 (271)
Q Consensus 87 ~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~-~a~~~~~~~~~~~~d~~~~~~A~~~f~~~ 165 (271)
T Consensus 29 n~~kesiR~~~~~l~~~y~~iGd~~~A~k~y~~~~~~~ts~~~~id~~l~~irv~i~~------~d~~~v~~~i~ka~~~ 102 (174)
T pfam10602 29 NLGKEEIRMANLDLGEHYAKIGDLENALKAYSRAREYCTSLGHKIDMCLNLIRVGIFF------NDWDHVSKYIEKAKSL 102 (174)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHC
T ss_conf 4270999999999899999966799999999998831788459999999999999997------0099999999999856
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 985200101345655555556666666555666665443223456899988652899811
Q gi|254781174|r 166 VERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEH 225 (271)
Q Consensus 166 i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~ 225 (271)
T Consensus 103 ~e~g--gD--w~r~-------nrlk---~y~Gl~~l~~r~f~~AA~~fl~~~~tf~~~el 148 (174)
T pfam10602 103 IEKG--GD--WERR-------NRLK---VYEGLALLAIRDFKEAAKLFLDSLSTFTSTEL 148 (174)
T ss_pred CCCC--CC--HHHH-------HHHH---HHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5144--55--8789-------8899---99999999716499999999637678884634