HHsearch results for GI: 254781174 and protein with PDBid: 1qqe_A
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.6e-09 Score=72.40 Aligned_cols=189 Identities=13% Similarity=0.046 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCH--
Q ss_conf 689999999999980989999999999985304773---026899877887765-45556799999887540112110--
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAG---VARKSLLMSAFVQYS-AGKYQQAASLGEEYITQYPESKN-- 129 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~---~a~~A~~~la~~~y~-~~~y~~A~~~~~~fi~~~P~s~~-- 129 (271)
....+.+.|..+.+.|++.+|++.+++.+..++... .+..+...+|..++. .+++++|+..|++.++.++....
T Consensus 76 ~a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~g~~~~a~~~~~~la~~~~~~~~~~~~A~~~y~kA~~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999987698799999999999987753741689999999989999872109999999999998755368889
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -1355544344455554431112345899999999999852001013456555555566666665556666654432234
Q gi|254781174|r 130 -VDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVA 208 (271)
Q Consensus 130 -~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~a 208 (271)
...++..+|.++.. .+...+|+..|++.+...|+++.... .....-+.+|..|+..|++..
T Consensus 156 ~~~~~~~~la~~~~~--------~~~y~~A~~~y~~a~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~d~~~ 217 (292)
T 1qqe_A 156 LSNKCFIKCADLKAL--------DGQYIEASDIYSKLIKSSMGNRLSQW----------SLKDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTTSSCTTTGG----------GHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHCHHHHH----------HHHHHHHHHHHHHHHCCCHHH
T ss_conf 899999999999998--------43699999999999987341346568----------899999999999998089999
Q ss_pred HHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 568999886528998115999--9999999997--49879999999999785699978999
Q gi|254781174|r 209 AIPRFQLVLANYSDAEHAEEA--MARLVEAYVA--LALMDEAREVVSLIQERYPQGYWARY 265 (271)
Q Consensus 209 A~~~~~~~i~~yp~t~~~~eA--l~~l~~~y~~--lg~~d~A~~~~~~l~~~yP~s~~~~~ 265 (271)
|+..|+..++..|+.+...+. +..+++++.. ++...+|...+..+. +-.+|...
T Consensus 218 A~~~~~~~~~~~~~~~~s~E~~~l~~l~~a~~~~d~e~~~~a~~~yd~~~---~ld~~~~~ 275 (292)
T 1qqe_A 218 AARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM---RLDKWKIT 275 (292)
T ss_dssp HHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS---CCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HCCHHHHH
T ss_conf 99999999975878887099999999999998279999999999998465---34689999