HHsearch results for GI: 254781174 and protein with PDBid: 2ho1_A
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A
Probab=99.78 E-value=2.8e-17 Score=117.61 Aligned_cols=194 Identities=11% Similarity=0.021 Sum_probs=144.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 76736899999999999809899999999999853047730268998778877654555679999988754011211013
Q gi|254781174|r 52 TDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD 131 (271)
Q Consensus 52 ~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~ 131 (271)
.....++..++.|..+++.|++++|+..|++++...|.. .++.+.+|.+++..|++++|+..|++.++..|+++
T Consensus 32 ~~~~~~day~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~~A~~~~~~al~~~p~~~--- 105 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--- 105 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC---
T ss_conf 408899999999999998599999999999999839998---99999999999986999999999999987299770---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHH--------------------HHH
Q ss_conf 5554434445555443111234589999999999985--200101345655555556--------------------666
Q gi|254781174|r 132 YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVER--YTNSPYVKGARFYVTVGR--------------------NQL 189 (271)
Q Consensus 132 ~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~--yP~S~ya~~A~~~l~~~~--------------------~~L 189 (271)
.+++..|.++..+ +...+|+..+...+.. .|+.. .+...+..+. ..-
T Consensus 106 ~~~~~la~~~~~~--------~~~~eA~~~~~~al~~~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 174 (252)
T 2ho1_A 106 RVLNNYGGFLYEQ--------KRYEEAYQRLLEASQDTLYPERS---RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp HHHHHHHHHHHHT--------TCHHHHHHHHHHHTTCTTCTTHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7889987889984--------54899999999999863375114---654128999887699999999999999868998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 6665556666654432234568999886528998115999999999999749879999999999785699978999
Q gi|254781174|r 190 AAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARY 265 (271)
Q Consensus 190 a~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~ 265 (271)
+.--+.+|..|.+.|++..|+..|+.+++..|+++ +++...+......|+.+.+..+...|...||+|..+..
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~l~~~l~~~~~~~~~a~~~~~~L~~~fP~s~e~~~ 247 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA---RSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999986999999999999985587999---99999999999879999999999999870999899999