HHsearch results for GI: 254781174 and protein with PDBid: 3dss_A

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A*
Probab=99.17  E-value=2e-09  Score=71.80  Aligned_cols=190  Identities=9%  Similarity=-0.057  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             89999999999980--9899999999999853047730268998778-87765455567999998875401121101355
Q gi|254781174|r   57 QREVYEKAVLFLKE--QNFSKAYEYFNQCSRDFPFAGVARKSLLMSA-FVQYSAGKYQQAASLGEEYITQYPESKNVDYV  133 (271)
Q Consensus        57 ~~~lY~~a~~~~~~--~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la-~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A  133 (271)
                      +...+..|......  +++.+|+..+++++...|....+   ....+ ..+...+.+..|+..+++.++..|+..   .+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~al~~~~~~i~~~p~~~---~a  181 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC---WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY---SS  181 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH---HH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH---HH
T ss_conf             999999758887607735999999999997248345789---988999999742462889999999998588748---99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5443444555544311123458999999999998520010134565555--------55566666665556666654432
Q gi|254781174|r  134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV--------TVGRNQLAAKEVEIGRYYLKRGE  205 (271)
Q Consensus       134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l--------~~~~~~La~~e~~ia~~Y~~~~~  205 (271)
                      ++.+|.++....        ...+|...++..+...|+..........+        ..............+..+...+.
T Consensus       182 ~~~lg~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  253 (331)
T 3dss_A          182 WHYRSCLLPQLH--------PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV  253 (331)
T ss_dssp             HHHHHHHHHHHS--------CCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHCC--------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             999999999806--------788899888878872858889999999846111999999999874761003689999866


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             2345689998865289981159999999999997498799999999997856999
Q gi|254781174|r  206 YVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG  260 (271)
Q Consensus       206 y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s  260 (271)
                      +..|+..++.+++.-|+.+....++..++.+|..+|..++|.+.+..+..-=|..
T Consensus       254 ~~~a~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~eA~~~~~kai~ldP~~  308 (331)
T 3dss_A          254 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  308 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999998688997999999999999986489999999999999879886