HHsearch results for GI: 254781174 and protein with PDBid: 3dss_A
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A*
Probab=99.17 E-value=2e-09 Score=71.80 Aligned_cols=190 Identities=9% Similarity=-0.057 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 89999999999980--9899999999999853047730268998778-87765455567999998875401121101355
Q gi|254781174|r 57 QREVYEKAVLFLKE--QNFSKAYEYFNQCSRDFPFAGVARKSLLMSA-FVQYSAGKYQQAASLGEEYITQYPESKNVDYV 133 (271)
Q Consensus 57 ~~~lY~~a~~~~~~--~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la-~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A 133 (271)
+...+..|...... +++.+|+..+++++...|....+ ....+ ..+...+.+..|+..+++.++..|+.. .+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~al~~~~~~i~~~p~~~---~a 181 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC---WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY---SS 181 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH---HH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH---HH
T ss_conf 999999758887607735999999999997248345789---988999999742462889999999998588748---99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5443444555544311123458999999999998520010134565555--------55566666665556666654432
Q gi|254781174|r 134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV--------TVGRNQLAAKEVEIGRYYLKRGE 205 (271)
Q Consensus 134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l--------~~~~~~La~~e~~ia~~Y~~~~~ 205 (271)
++.+|.++.... ...+|...++..+...|+..........+ ..............+..+...+.
T Consensus 182 ~~~lg~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (331)
T 3dss_A 182 WHYRSCLLPQLH--------PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV 253 (331)
T ss_dssp HHHHHHHHHHHS--------CCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHCC--------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999806--------788899888878872858889999999846111999999999874761003689999866
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 2345689998865289981159999999999997498799999999997856999
Q gi|254781174|r 206 YVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG 260 (271)
Q Consensus 206 y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s 260 (271)
+..|+..++.+++.-|+.+....++..++.+|..+|..++|.+.+..+..-=|..
T Consensus 254 ~~~a~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~eA~~~~~kai~ldP~~ 308 (331)
T 3dss_A 254 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999998688997999999999999986489999999999999879886