HHsearch results for GI: 254781174 and protein with PDBid: 3dss_A
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A*
Probab=98.93 E-value=1.4e-08 Score=66.86 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=39.6
Q ss_pred HHHHHHHHCCH-HHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999980989-99999999998530477302-------68998778877654555679999988754011211013555
Q gi|254781174|r 63 KAVLFLKEQNF-SKAYEYFNQCSRDFPFAGVA-------RKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 63 ~a~~~~~~~~y-~~A~~~f~~i~~~~P~s~~a-------~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
........+++ .+|+..|++++...|...-+ -.++...+..+...+.+++|+..++..++.+|+++. ++
T Consensus 35 ~~~~~~~~~~~~~eAl~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~al~~~p~~~~---~~ 111 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TW 111 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH---HH
T ss_conf 999998747573999999999998888878999999999997043335688887899999999999988899899---99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 44344455554431112345899999999999852001
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
+.+|+++.... .....+|+..++..+...|+.
T Consensus 112 ~~~~~~~~~~~------~~~~~~a~~~~~~al~~~~~~ 143 (331)
T 3dss_A 112 HHRCWLLSRLP------EPNWARELELCARFLEADERN 143 (331)
T ss_dssp HHHHHHHHHCS------SCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHC------CCCHHHHHHHHHHHHHHCCCC
T ss_conf 99758887607------735999999999997248345