HHsearch results for GI: 254781174 and protein with PDBid: 3mkr_A
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.32 E-value=4.8e-10 Score=75.37 Aligned_cols=174 Identities=9% Similarity=-0.073 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
....+...|..+...|++..|+..+.+.....|... .....+.+|.++...|++++|+..+++..... +..
T Consensus 64 ~~~~~~~la~~~~~~~~~~~a~~~l~~~l~~~~~~~-~~~~~~~~a~~~~~~~~~~~Al~~~~~~~~~~--------~~~ 134 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-NTTFLLMAASIYFYDQNPDAALRTLHQGDSLE--------CMA 134 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHH--------HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC--------HHH
T ss_conf 399999999999878988999999999998688921-19999999999998799999999874536655--------589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43444555544311123458999999999998520010134565555555666666655566666544322345689998
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQL 215 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~ 215 (271)
..|.++.. ++...+|...++..+...|++..+.-. +.++.++...+++..|+..++.
T Consensus 135 ~~~~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~---------------~~~~~~~~~~~~~~~A~~~~~~ 191 (291)
T 3mkr_A 135 MTVQILLK--------LDRLDLARKELKKMQDQDEDATLTQLA---------------TAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHHHH--------TTCHHHHHHHHHHHHHHCTTCHHHHHH---------------HHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCHHHHHHHHHHHHHHCCCCHHHHHH---------------HHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999998--------699888999999999864257799999---------------8357775054239999998888
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 8652899811599999999999974987999999999978569997899
Q gi|254781174|r 216 VLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWAR 264 (271)
Q Consensus 216 ~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~ 264 (271)
++...|+++ +++..+|.+|..+|..++|.+.+.......|+....-
T Consensus 192 ~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 237 (291)
T 3mkr_A 192 MADKCSPTL---LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHHHSCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 887501469---9998899999981988999999999998689999999