Query gi|254781174|ref|YP_003065587.1| outer membrane assembly lipoprotein YfiO [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 271
No_of_seqs 187 out of 1985
Neff 8.2
Searched_HMMs 23785
Date Wed Jun 1 03:22:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781174.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xev_A YBGF; tetratricopeptide 99.8 1.5E-20 6.1E-25 136.7 11.9 121 58-186 3-123 (129)
2 3cv0_A Peroxisome targeting si 99.8 8E-17 3.4E-21 114.9 20.8 192 56-259 20-272 (327)
3 3fp2_A TPR repeat-containing p 99.8 9.3E-17 3.9E-21 114.5 21.1 197 55-269 308-504 (537)
4 2ho1_A Type 4 fimbrial biogene 99.8 2.8E-17 1.2E-21 117.6 18.0 194 52-265 32-247 (252)
5 1fch_A Peroxisomal targeting s 99.8 2.1E-16 8.9E-21 112.5 21.0 189 57-262 64-286 (368)
6 2pl2_A Hypothetical conserved 99.8 4.6E-16 1.9E-20 110.5 21.8 179 56-261 4-185 (217)
7 3ieg_A DNAJ homolog subfamily 99.8 4.8E-16 2E-20 110.4 21.7 68 194-264 276-343 (359)
8 2xev_A YBGF; tetratricopeptide 99.7 2.6E-17 1.1E-21 117.7 12.9 116 133-270 4-119 (129)
9 2vq2_A PILW, putative fimbrial 99.7 1.5E-15 6.4E-20 107.4 21.3 191 56-264 7-219 (225)
10 2q7f_A YRRB protein; TPR, prot 99.7 6.6E-15 2.8E-19 103.7 20.8 185 69-270 35-236 (243)
11 2gw1_A Mitochondrial precursor 99.7 2.7E-15 1.1E-19 106.0 18.0 183 56-263 303-485 (514)
12 1w3b_A UDP-N-acetylglucosamine 99.7 5E-15 2.1E-19 104.4 18.4 188 56-263 168-375 (388)
13 1w3b_A UDP-N-acetylglucosamine 99.7 8.3E-15 3.5E-19 103.2 18.8 201 57-263 33-307 (388)
14 3cv0_A Peroxisome targeting si 99.7 2.6E-14 1.1E-18 100.3 21.0 196 57-258 55-321 (327)
15 1fch_A Peroxisomal targeting s 99.7 3E-14 1.3E-18 99.9 20.5 200 55-261 96-319 (368)
16 3hym_B Cell division cycle pro 99.7 3.3E-14 1.4E-18 99.7 18.8 193 56-265 89-308 (330)
17 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.2E-14 2.6E-18 98.1 19.4 195 55-266 41-255 (275)
18 2gw1_A Mitochondrial precursor 99.6 1.9E-14 8E-19 101.1 15.7 156 61-251 241-396 (514)
19 3ieg_A DNAJ homolog subfamily 99.6 4.5E-13 1.9E-17 93.1 22.6 205 56-263 36-308 (359)
20 3fp2_A TPR repeat-containing p 99.6 4E-14 1.7E-18 99.2 17.2 69 57-128 25-93 (537)
21 3hym_B Cell division cycle pro 99.6 1E-13 4.4E-18 96.7 18.9 199 57-261 22-270 (330)
22 2r5s_A Uncharacterized protein 99.6 1E-14 4.3E-19 102.6 12.1 165 56-252 5-169 (176)
23 2pl2_A Hypothetical conserved 99.6 2E-13 8.6E-18 95.1 17.2 162 55-251 37-209 (217)
24 3mkr_A Coatomer subunit epsilo 99.6 1.1E-12 4.7E-17 90.7 20.6 175 56-267 100-275 (291)
25 3mv2_B Coatomer subunit epsilo 99.6 2.1E-13 8.7E-18 95.0 15.7 191 54-268 97-294 (310)
26 2ho1_A Type 4 fimbrial biogene 99.6 5.5E-13 2.3E-17 92.6 16.9 165 85-263 28-211 (252)
27 3edt_B KLC 2, kinesin light ch 99.5 2E-12 8.4E-17 89.3 19.2 175 57-253 43-278 (283)
28 2q7f_A YRRB protein; TPR, prot 99.5 3.1E-13 1.3E-17 94.0 14.5 168 54-235 54-238 (243)
29 3edt_B KLC 2, kinesin light ch 99.5 9.8E-13 4.1E-17 91.1 15.1 156 75-254 26-196 (283)
30 3mv2_B Coatomer subunit epsilo 99.5 2.9E-13 1.2E-17 94.2 12.0 176 60-260 69-244 (310)
31 1qqe_A Vesicular transport pro 99.5 7.3E-12 3.1E-16 86.0 18.1 196 57-270 36-245 (292)
32 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1E-12 4.2E-17 91.0 12.7 160 57-234 6-167 (213)
33 3gyz_A Chaperone protein IPGC; 99.4 2E-12 8.4E-17 89.3 12.2 118 54-185 33-150 (151)
34 2fo7_A Synthetic consensus TPR 99.4 8.7E-12 3.7E-16 85.5 15.3 134 58-222 2-135 (136)
35 2dba_A Smooth muscle cell asso 99.4 3.8E-12 1.6E-16 87.7 13.4 120 52-182 23-142 (148)
36 2fo7_A Synthetic consensus TPR 99.4 6.4E-12 2.7E-16 86.3 14.5 135 95-260 2-136 (136)
37 2vsy_A XCC0866; transferase, g 99.4 5.5E-12 2.3E-16 86.7 13.4 107 55-175 21-127 (568)
38 2vq2_A PILW, putative fimbrial 99.4 1.8E-11 7.8E-16 83.6 16.0 59 196-257 119-177 (225)
39 2vgx_A Chaperone SYCD; alterna 99.4 1E-11 4.3E-16 85.1 13.2 113 54-180 18-130 (148)
40 2ifu_A Gamma-SNAP; membrane fu 99.4 1.8E-10 7.6E-15 77.9 18.4 196 57-271 35-241 (307)
41 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.5E-10 1.5E-14 76.2 19.4 177 55-246 75-272 (275)
42 1hz4_A MALT regulatory protein 99.3 5.9E-10 2.5E-14 74.9 20.2 196 58-253 54-319 (373)
43 2xcb_A PCRH, regulatory protei 99.3 3.6E-11 1.5E-15 81.9 13.9 115 54-182 15-129 (142)
44 1wao_1 Serine/threonine protei 99.3 1.4E-12 6E-17 90.1 6.2 120 57-193 6-125 (477)
45 3gw4_A Uncharacterized protein 99.3 1.4E-10 6.1E-15 78.4 16.5 181 67-268 2-191 (203)
46 2vyi_A SGTA protein; chaperone 99.3 2.9E-11 1.2E-15 82.5 12.7 108 53-174 8-115 (131)
47 2c2l_A CHIP, carboxy terminus 99.3 4.5E-11 1.9E-15 81.4 13.7 104 56-173 3-106 (281)
48 3mkr_A Coatomer subunit epsilo 99.3 4.8E-10 2E-14 75.4 18.7 174 56-264 64-237 (291)
49 2ooe_A Cleavage stimulation fa 99.3 1.4E-09 5.9E-14 72.7 19.7 184 56-268 320-504 (530)
50 1a17_A Serine/threonine protei 99.3 1.2E-10 5.2E-15 78.8 13.9 108 54-175 10-117 (166)
51 1hxi_A PEX5, peroxisome target 99.3 3.9E-11 1.6E-15 81.8 10.9 104 57-174 17-120 (121)
52 1na0_A Designed protein CTPR3; 99.3 8.7E-11 3.7E-15 79.7 12.4 105 55-173 7-111 (125)
53 1na0_A Designed protein CTPR3; 99.3 1.2E-10 5E-15 78.9 12.8 118 93-241 8-125 (125)
54 1elw_A TPR1-domain of HOP; HOP 99.3 1.2E-10 5.1E-15 78.9 12.7 106 57-176 4-109 (118)
55 2vgx_A Chaperone SYCD; alterna 99.2 5.3E-11 2.2E-15 81.0 10.4 136 71-237 1-136 (148)
56 3dra_A Protein farnesyltransfe 99.2 1.1E-09 4.8E-14 73.2 17.1 202 57-268 33-302 (306)
57 1p5q_A FKBP52, FK506-binding p 99.2 6.7E-10 2.8E-14 74.6 15.0 121 57-191 147-279 (336)
58 2fbn_A 70 kDa peptidylprolyl i 99.2 3.9E-10 1.7E-14 75.9 13.8 120 56-189 37-169 (198)
59 2h6f_A Protein farnesyltransfe 99.2 4.1E-09 1.7E-13 70.0 18.7 100 59-172 133-233 (382)
60 2r5s_A Uncharacterized protein 99.2 8.8E-11 3.7E-15 79.7 9.7 136 95-261 7-142 (176)
61 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4E-10 1.7E-14 75.9 12.5 108 56-174 36-156 (213)
62 1qqe_A Vesicular transport pro 99.2 1.6E-09 6.6E-14 72.4 15.3 189 56-265 76-275 (292)
63 2e2e_A Formate-dependent nitri 99.2 2.5E-10 1.1E-14 77.0 10.9 140 66-233 19-158 (177)
64 3dss_A Geranylgeranyl transfer 99.2 2E-09 8.3E-14 71.8 15.5 190 57-260 108-308 (331)
65 3gyz_A Chaperone protein IPGC; 99.2 3.5E-10 1.5E-14 76.2 11.5 118 84-229 26-143 (151)
66 2vyi_A SGTA protein; chaperone 99.2 5.8E-10 2.4E-14 74.9 12.5 118 94-242 12-129 (131)
67 2uy1_A Cleavage stimulation fa 99.2 1.8E-08 7.6E-13 66.2 20.1 73 53-128 10-82 (493)
68 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 7.1E-10 3E-14 74.4 12.3 120 56-189 267-398 (457)
69 2vsy_A XCC0866; transferase, g 99.2 6.3E-10 2.7E-14 74.7 12.0 144 70-247 2-145 (568)
70 1ihg_A Cyclophilin 40; ppiase 99.1 9E-10 3.8E-14 73.8 12.7 119 57-189 223-354 (370)
71 1hz4_A MALT regulatory protein 99.1 6.1E-08 2.6E-12 63.1 21.9 187 57-260 14-207 (373)
72 2h6f_A Protein farnesyltransfe 99.1 5.6E-09 2.4E-13 69.2 15.3 96 63-172 103-199 (382)
73 1elr_A TPR2A-domain of HOP; HO 99.1 2.2E-09 9.1E-14 71.6 12.5 105 60-171 7-111 (131)
74 2uy1_A Cleavage stimulation fa 99.1 1E-08 4.3E-13 67.6 15.9 166 56-253 212-380 (493)
75 3ffl_A Anaphase-promoting comp 99.1 5.2E-10 2.2E-14 75.2 8.0 141 57-238 20-166 (167)
76 2dba_A Smooth muscle cell asso 99.0 3.8E-09 1.6E-13 70.2 11.8 116 93-233 27-142 (148)
77 2if4_A ATFKBP42; FKBP-like, al 99.0 3.4E-10 1.4E-14 76.3 5.9 107 56-173 178-298 (338)
78 2ooe_A Cleavage stimulation fa 99.0 1.7E-08 7.1E-13 66.4 13.9 160 69-260 298-458 (530)
79 1b89_A Protein (clathrin heavy 99.0 5.4E-10 2.3E-14 75.1 5.8 76 57-144 32-107 (449)
80 2xcb_A PCRH, regulatory protei 99.0 9.3E-09 3.9E-13 67.9 11.4 113 89-229 13-125 (142)
81 3dss_A Geranylgeranyl transfer 98.9 1.4E-08 5.9E-13 66.9 11.5 101 63-172 35-143 (331)
82 2ifu_A Gamma-SNAP; membrane fu 98.9 1.4E-07 5.8E-12 61.1 16.5 193 56-269 75-274 (307)
83 3k9i_A BH0479 protein; putativ 98.9 2.1E-09 8.9E-14 71.6 7.1 94 70-174 3-96 (117)
84 2e2e_A Formate-dependent nitri 98.9 4.5E-08 1.9E-12 63.9 13.9 103 56-172 43-148 (177)
85 1elw_A TPR1-domain of HOP; HOP 98.9 1.7E-08 7.3E-13 66.3 11.6 109 95-231 5-113 (118)
86 1hxi_A PEX5, peroxisome target 98.9 6.4E-09 2.7E-13 68.8 9.3 104 94-225 17-120 (121)
87 1wao_1 Serine/threonine protei 98.9 4.4E-09 1.9E-13 69.8 8.0 80 55-140 38-117 (477)
88 2hr2_A Hypothetical protein; N 98.9 5.6E-08 2.4E-12 63.3 13.0 106 59-172 13-135 (159)
89 1a17_A Serine/threonine protei 98.8 1.1E-07 4.5E-12 61.7 13.4 123 94-247 13-137 (166)
90 2kck_A TPR repeat; tetratricop 98.8 1E-08 4.2E-13 67.7 7.6 84 57-144 6-89 (112)
91 1na3_A Designed protein CTPR2; 98.8 2.7E-08 1.1E-12 65.2 9.5 84 55-144 7-90 (91)
92 1p5q_A FKBP52, FK506-binding p 98.8 3.7E-07 1.6E-11 58.5 15.0 120 97-244 150-281 (336)
93 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 2.1E-07 8.7E-12 60.0 13.5 119 95-241 269-399 (457)
94 3ffl_A Anaphase-promoting comp 98.8 3.3E-08 1.4E-12 64.7 8.9 84 58-164 64-147 (167)
95 3n71_A Histone lysine methyltr 98.8 5.2E-07 2.2E-11 57.7 15.0 138 57-216 309-461 (490)
96 2v5f_A Prolyl 4-hydroxylase su 98.8 4.9E-08 2.1E-12 63.7 9.8 84 55-141 3-90 (104)
97 1elr_A TPR2A-domain of HOP; HO 98.8 2.3E-07 9.7E-12 59.8 12.9 106 96-222 6-111 (131)
98 1ya0_A SMG-7 transcript varian 98.8 5.9E-07 2.5E-11 57.4 14.8 69 57-128 152-220 (497)
99 3gw4_A Uncharacterized protein 98.7 9E-07 3.8E-11 56.3 15.2 151 54-223 23-180 (203)
100 1ihg_A Cyclophilin 40; ppiase 98.7 5.9E-07 2.5E-11 57.4 14.0 121 96-265 225-345 (370)
101 2fbn_A 70 kDa peptidylprolyl i 98.7 6.5E-07 2.7E-11 57.1 14.1 116 99-263 43-158 (198)
102 2c2l_A CHIP, carboxy terminus 98.7 3.6E-08 1.5E-12 64.5 6.3 72 55-129 36-107 (281)
103 2if4_A ATFKBP42; FKBP-like, al 98.7 1.4E-07 5.7E-12 61.1 9.2 137 95-259 180-331 (338)
104 3k9i_A BH0479 protein; putativ 98.6 1.4E-07 5.7E-12 61.1 8.8 81 58-143 28-108 (117)
105 1nzn_A CGI-135 protein, fissio 98.6 6.1E-07 2.5E-11 57.3 11.5 99 63-173 7-108 (126)
106 1nzn_A CGI-135 protein, fissio 98.6 6.8E-07 2.9E-11 57.0 11.7 114 99-240 6-121 (126)
107 2kc7_A BFR218_protein; tetratr 98.6 2.1E-07 8.7E-12 60.0 8.3 68 61-130 4-71 (99)
108 1zu2_A Mitochondrial import re 98.6 1.5E-06 6.4E-11 55.0 12.5 97 72-174 17-126 (158)
109 2kat_A Uncharacterized protein 98.6 6.5E-07 2.7E-11 57.1 10.6 84 75-172 3-86 (115)
110 2hr2_A Hypothetical protein; N 98.6 8.9E-07 3.7E-11 56.3 10.9 113 98-224 15-136 (159)
111 3ma5_A Tetratricopeptide repea 98.5 7E-07 3E-11 56.9 9.5 75 53-130 3-77 (100)
112 3dra_A Protein farnesyltransfe 98.5 1E-05 4.3E-10 50.2 15.3 67 57-126 67-135 (306)
113 1pc2_A Mitochondria fission pr 98.5 1E-06 4.2E-11 56.0 9.8 92 70-173 11-105 (152)
114 1y8m_A FIS1; mitochondria, unk 98.4 2.2E-06 9.3E-11 54.0 10.3 71 93-173 38-111 (144)
115 2ond_A Cleavage stimulation fa 98.4 6.4E-05 2.7E-09 45.5 19.8 178 58-264 100-278 (308)
116 1pc2_A Mitochondria fission pr 98.4 1.1E-06 4.5E-11 55.9 8.4 110 100-232 4-113 (152)
117 3n71_A Histone lysine methyltr 98.4 8.9E-06 3.7E-10 50.5 13.2 139 98-253 313-461 (490)
118 2kck_A TPR repeat; tetratricop 98.4 2E-06 8.4E-11 54.3 9.3 66 95-171 7-72 (112)
119 1na3_A Designed protein CTPR2; 98.3 2.9E-06 1.2E-10 53.4 9.0 68 94-172 9-76 (91)
120 1y8m_A FIS1; mitochondria, unk 98.3 7.3E-06 3.1E-10 51.0 10.7 83 56-143 38-123 (144)
121 1ouv_A Conserved hypothetical 98.3 0.00011 4.5E-09 44.2 16.5 187 55-255 4-250 (273)
122 2kat_A Uncharacterized protein 98.3 3.6E-06 1.5E-10 52.8 8.4 72 54-128 16-87 (115)
123 2ond_A Cleavage stimulation fa 98.3 0.0001 4.4E-09 44.3 15.7 160 69-260 76-236 (308)
124 2v5f_A Prolyl 4-hydroxylase su 98.2 6.9E-06 2.9E-10 51.2 8.6 73 93-173 4-80 (104)
125 1zu2_A Mitochondrial import re 98.2 3.9E-05 1.7E-09 46.7 12.1 116 104-228 12-129 (158)
126 1zbp_A Hypothetical protein VP 98.1 3.6E-05 1.5E-09 46.9 11.0 66 63-131 3-68 (273)
127 1b89_A Protein (clathrin heavy 98.1 5.5E-06 2.3E-10 51.7 6.2 60 57-120 61-120 (449)
128 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 6.8E-10 49.0 8.4 72 91-173 4-75 (100)
129 2kc7_A BFR218_protein; tetratr 98.0 2E-05 8.6E-10 48.4 7.7 68 98-175 4-71 (99)
130 2pqr_A Mitochondria fission 1 98.0 2.2E-05 9.3E-10 48.2 7.7 74 55-130 37-113 (129)
131 1ya0_A SMG-7 transcript varian 97.9 0.00052 2.2E-08 40.2 13.0 56 194-252 156-211 (497)
132 3pdn_A SET and MYND domain-con 97.8 0.00087 3.7E-08 38.9 13.5 77 194-270 332-418 (428)
133 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0024 1E-07 36.3 19.9 176 58-251 76-261 (293)
134 1zbp_A Hypothetical protein VP 97.6 0.00091 3.8E-08 38.8 10.9 130 101-260 4-133 (273)
135 3e4b_A ALGK; tetratricopeptide 97.4 0.0026 1.1E-07 36.1 11.2 53 194-252 287-347 (452)
136 1qsa_A Protein (soluble lytic 97.4 0.002 8.3E-08 36.8 10.2 62 203-270 298-360 (618)
137 2qfc_A PLCR protein; TPR, HTH, 97.3 0.0055 2.3E-07 34.2 12.9 135 62-215 120-262 (293)
138 3bee_A Putative YFRE protein; 97.3 0.0015 6.3E-08 37.5 9.2 71 57-130 6-79 (93)
139 3bee_A Putative YFRE protein; 97.2 0.0013 5.5E-08 37.9 7.7 68 95-173 7-77 (93)
140 3e4b_A ALGK; tetratricopeptide 97.1 0.0057 2.4E-07 34.1 10.3 54 194-252 322-383 (452)
141 2pqr_A Mitochondria fission 1 97.1 0.0025 1.1E-07 36.2 8.5 75 93-177 38-115 (129)
142 3pdn_A SET and MYND domain-con 96.9 0.0081 3.4E-07 33.2 9.7 61 62-122 291-356 (428)
143 3lvg_A Clathrin heavy chain 1; 95.8 2.8E-06 1.2E-10 53.5 -13.7 75 57-143 54-128 (624)
144 1ouv_A Conserved hypothetical 94.5 0.17 7.2E-06 25.5 17.6 46 93-143 5-50 (273)
145 3lvg_A Clathrin heavy chain 1; 93.6 0.00077 3.2E-08 39.2 -5.8 54 60-117 86-139 (624)
146 2ff4_A Probable regulatory pro 93.2 0.31 1.3E-05 24.0 11.6 102 153-257 129-235 (388)
147 1w7f_A Beta-lactamase; hydrola 91.0 0.048 2E-06 28.7 0.8 32 13-44 2-33 (307)
148 3esl_A Checkpoint serine/threo 88.9 0.84 3.5E-05 21.5 15.7 132 70-221 5-146 (202)
149 1xi4_A Clathrin heavy chain; a 85.9 1.3 5.3E-05 20.5 12.4 47 62-119 1200-1246(1630)
150 1klx_A Cysteine rich protein B 85.7 1.3 5.5E-05 20.4 7.9 80 72-167 10-89 (138)
151 3kae_A CDC27, possible protein 83.8 1.6 6.7E-05 19.9 15.2 183 62-259 38-240 (242)
152 2wpv_A GET4, UPF0363 protein Y 77.6 2.6 0.00011 18.6 17.3 68 61-128 17-87 (312)
153 3efz_A 14-3-3 protein; 14-3-3, 77.4 2.7 0.00011 18.6 4.9 48 205-252 174-222 (268)
154 2etd_A LEMA protein; TM0961, s 73.4 3.4 0.00014 18.0 11.1 69 151-226 78-146 (171)
155 3mv2_A Coatomer subunit alpha; 70.4 4 0.00017 17.6 12.1 47 224-270 204-250 (325)
156 3lpz_A GET4 (YOR164C homolog); 66.6 4.8 0.0002 17.1 17.6 67 62-128 17-89 (336)
157 2ijq_A Hypothetical protein; s 66.3 4.8 0.0002 17.1 8.0 71 56-126 31-107 (161)
158 3lxu_X Tripeptidyl-peptidase 2 65.3 5 0.00021 16.9 18.8 60 197-260 1291-1350(1354)
159 2pzi_A Probable serine/threoni 65.1 5.1 0.00021 16.9 13.0 67 58-127 434-500 (681)
160 3kez_A Putative sugar binding 60.2 6.3 0.00026 16.4 9.4 64 53-123 162-225 (461)
161 2cwy_A Hypothetical protein TT 60.1 6.3 0.00027 16.4 5.6 46 61-106 5-51 (94)
162 2o8p_A 14-3-3 domain containin 58.7 6.7 0.00028 16.2 6.3 64 60-124 9-76 (227)
163 3fsp_A A/G-specific adenine gl 54.1 8 0.00034 15.8 8.0 49 96-144 40-94 (369)
164 1wfd_A Hypothetical protein 15 51.6 8.8 0.00037 15.5 6.0 32 55-86 13-44 (93)
165 2cpt_A SKD1 protein, vacuolar 46.1 11 0.00045 15.0 4.6 30 57-86 18-47 (117)
166 3i4g_A SUSD-like carbohydrate 46.1 11 0.00045 15.0 8.9 71 54-129 160-233 (528)
167 2npm_A 14-3-3 domain containin 45.0 11 0.00047 14.9 5.0 65 57-122 28-95 (260)
168 2v6x_A Vacuolar protein sortin 42.9 12 0.00051 14.7 6.0 30 57-86 13-42 (85)
169 3n5n_X A/G-specific adenine DN 39.2 14 0.00058 14.4 7.6 46 98-143 52-103 (287)
170 3omb_A Extracellular solute-bi 38.7 7.3 0.00031 16.0 0.7 25 19-43 7-31 (535)
171 3mkr_B Coatomer subunit alpha; 35.4 16 0.00067 14.0 13.6 33 201-233 209-241 (320)
172 2crb_A Nuclear receptor bindin 35.3 16 0.00067 14.0 3.8 29 57-85 15-43 (97)
173 2vkj_A TM1634; membrane protei 35.2 16 0.00067 14.0 5.9 57 182-238 45-101 (106)
174 2rpa_A Katanin P60 ATPase-cont 35.1 16 0.00068 14.0 2.8 22 100-121 18-39 (78)
175 2w2u_A Hypothetical P60 katani 35.0 16 0.00068 14.0 4.7 23 60-82 22-44 (83)
176 2v1t_A Mitochondrial import re 32.8 18 0.00074 13.8 4.1 25 64-88 24-48 (73)
177 2cfu_A SDSA1; SDS-hydrolase, l 23.2 26 0.0011 12.8 6.8 49 194-245 453-501 (658)
178 1om2_A Protein (mitochondrial 23.0 26 0.0011 12.7 4.0 28 99-126 25-52 (95)
179 3myv_A SUSD superfamily protei 23.0 27 0.0011 12.7 8.9 63 55-124 158-220 (454)
180 3eps_A Isocitrate dehydrogenas 21.8 28 0.0012 12.6 3.7 71 61-131 28-100 (578)
181 2v6y_A AAA family ATPase, P60 21.5 28 0.0012 12.6 4.7 22 61-82 15-36 (83)
182 2wvi_A Mitotic checkpoint seri 21.1 29 0.0012 12.5 8.5 116 78-221 4-127 (164)
183 3eki_A High affinity transport 21.1 20 0.00084 13.5 0.4 18 77-94 77-94 (403)
No 1
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.84 E-value=1.5e-20 Score=136.74 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999809899999999999853047730268998778877654555679999988754011211013555443
Q gi|254781174|r 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLV 137 (271)
Q Consensus 58 ~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~ 137 (271)
+..|+.|..+++.|+|++|++.|++++..+|.++++++|.+++|.+++.+|+|++|+..|+++++.+|+|+.++.++|.+
T Consensus 3 ~~~Y~~a~~~~~~~~~~~A~~~~~~~i~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~a~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999999978999999999999988859846899999999999975009999999999998789980689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 4445555443111234589999999999985200101345655555556
Q gi|254781174|r 138 GMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGR 186 (271)
Q Consensus 138 a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~ 186 (271)
|.+++.+ +...+|+..|+.+++.||+|+++..|+.+|..++
T Consensus 83 a~~~~~~--------~~~~~A~~~~~~~~~~yP~s~~a~~a~~~L~~l~ 123 (129)
T 2xev_A 83 GLSQYGE--------GKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHT--------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHC--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999984--------9999999999999988819999999999999871
No 2
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=8e-17 Score=114.93 Aligned_cols=192 Identities=14% Similarity=0.027 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
..+..|++|..+++.|++.+|+..|++++...|.. .++...+|.++...|++++|+..+++.++..|+++. ++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~eA~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~ 93 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA---VHA 93 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHH
T ss_conf 67999999999998699999999999999878998---999999999999879999999999999873988699---999
Q ss_pred HHHHHHHHHHH------------H-----------------------------HHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 43444555544------------3-----------------------------111234589999999999985200101
Q gi|254781174|r 136 LVGMSYAQMIR------------D-----------------------------VPYDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 136 ~~a~~~~~~~~------------~-----------------------------~~~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
..|.++..+.. . .....+...+|+..++..+...|+..-
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 173 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 98899987174156999876444027307888765424566665699999999999877899999999999974986203
Q ss_pred HHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 34565555555--------------------6666666555666665443223456899988652899811599999999
Q gi|254781174|r 175 VKGARFYVTVG--------------------RNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLV 234 (271)
Q Consensus 175 a~~A~~~l~~~--------------------~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~ 234 (271)
+ ...+..+ ...-+.--..+|..|.+.|++..|+..|+.+++..|+. +++++.+|
T Consensus 174 ~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~---~~~~~~lg 247 (327)
T 3cv0_A 174 L---HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY---VRVMYNMA 247 (327)
T ss_dssp H---HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHH
T ss_pred H---HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHH
T ss_conf 4---44012210255449999999999886187879999999999998478999999999999859898---99999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999749879999999999785699
Q gi|254781174|r 235 EAYVALALMDEAREVVSLIQERYPQ 259 (271)
Q Consensus 235 ~~y~~lg~~d~A~~~~~~l~~~yP~ 259 (271)
.+|..+|..++|.+.+...+.-.|+
T Consensus 248 ~~~~~~g~~~~A~~~~~~ai~l~~~ 272 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999849999999999999868999
No 3
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A
Probab=99.78 E-value=9.3e-17 Score=114.54 Aligned_cols=197 Identities=14% Similarity=0.113 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..+..++..|..++..|+|++|++.|++++...|.+. .+.+.+|.+++..|++++|+..+++.++.+|+++ .++
T Consensus 308 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 381 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV---YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP---EVP 381 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHH
T ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHH
T ss_conf 4014554012105655222355788999999764010---3334555567752359999999999998689999---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44344455554431112345899999999999852001013456555555566666665556666654432234568999
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQ 214 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~ 214 (271)
+.+|.++.. ++...+|+..|+..+...|+++.+......+ ..+..........+..+...+++..|+..|+
T Consensus 382 ~~lg~~~~~--------~g~~~~A~~~~~~al~l~p~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 382 TFFAEILTD--------RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-IGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp HHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH-HHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999997--------7999999999999986399999999999999-9865788998765579887658999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 8865289981159999999999997498799999999997856999789999986
Q gi|254781174|r 215 LVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVETL 269 (271)
Q Consensus 215 ~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~ 269 (271)
.+++..|+.+ ++++.||.+|..+|+.++|.+.++....-.|+......+..+
T Consensus 453 kal~l~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~e~~~~~~~ 504 (537)
T 3fp2_A 453 KACELDPRSE---QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504 (537)
T ss_dssp HHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHH
T ss_pred HHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9998599989---999999999998599999999999997319997999999999
No 4
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A
Probab=99.78 E-value=2.8e-17 Score=117.61 Aligned_cols=194 Identities=11% Similarity=0.021 Sum_probs=144.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 76736899999999999809899999999999853047730268998778877654555679999988754011211013
Q gi|254781174|r 52 TDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD 131 (271)
Q Consensus 52 ~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~ 131 (271)
.....++..++.|..+++.|++++|+..|++++...|.. .++.+.+|.+++..|++++|+..|++.++..|+++
T Consensus 32 ~~~~~~day~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~~~~~g~~~~A~~~~~~al~~~p~~~--- 105 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--- 105 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC---
T ss_conf 408899999999999998599999999999999839998---99999999999986999999999999987299770---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHH--------------------HHH
Q ss_conf 5554434445555443111234589999999999985--200101345655555556--------------------666
Q gi|254781174|r 132 YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVER--YTNSPYVKGARFYVTVGR--------------------NQL 189 (271)
Q Consensus 132 ~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~--yP~S~ya~~A~~~l~~~~--------------------~~L 189 (271)
.+++..|.++..+ +...+|+..+...+.. .|+.. .+...+..+. ..-
T Consensus 106 ~~~~~la~~~~~~--------~~~~eA~~~~~~al~~~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 174 (252)
T 2ho1_A 106 RVLNNYGGFLYEQ--------KRYEEAYQRLLEASQDTLYPERS---RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp HHHHHHHHHHHHT--------TCHHHHHHHHHHHTTCTTCTTHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 7889987889984--------54899999999999863375114---654128999887699999999999999868998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 6665556666654432234568999886528998115999999999999749879999999999785699978999
Q gi|254781174|r 190 AAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARY 265 (271)
Q Consensus 190 a~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~ 265 (271)
+.--+.+|..|.+.|++..|+..|+.+++..|+++ +++...+......|+.+.+..+...|...||+|..+..
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~l~~~l~~~~~~~~~a~~~~~~L~~~fP~s~e~~~ 247 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA---RSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999986999999999999985587999---99999999999879999999999999870999899999
No 5
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A
Probab=99.77 E-value=2.1e-16 Score=112.47 Aligned_cols=189 Identities=12% Similarity=0.065 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
....|++|..+++.|++++|+..|++++...|.. +++.+.+|.++..+|++++|+..|++.++..|+++ .+++.
T Consensus 64 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 137 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ---TALMA 137 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH---HHHHH
T ss_conf 6889999999998599999999999999729998---99999999999987999999999999987199989---99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-----------------------------HHHHHHH---
Q ss_conf 34445555443111234589999999999985200101345-----------------------------6555555---
Q gi|254781174|r 137 VGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKG-----------------------------ARFYVTV--- 184 (271)
Q Consensus 137 ~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~-----------------------------A~~~l~~--- 184 (271)
.|.++..+ +...+|+..++..+...|....... |......
T Consensus 138 ~~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~a~~ 209 (368)
T 1fch_A 138 LAVSFTNE--------SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp HHHHHHHT--------TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999983--------8841023688899986810699987787777777778999999999874139999999999998
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 566--666665556666654432234568999886528998115999999999999749879999999999785699978
Q gi|254781174|r 185 GRN--QLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYW 262 (271)
Q Consensus 185 ~~~--~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~ 262 (271)
+.. .-+.-...+|..|...|+|..|+..|+.++...|+. .++++.+|.+|..+|..++|.+.++......|+..+
T Consensus 210 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 286 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 48542014777779999988244777999899999869997---999999999999878999999999999974999899
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27}
Probab=99.76 E-value=4.6e-16 Score=110.49 Aligned_cols=179 Identities=17% Similarity=0.198 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
+++..++.|..+++.|+|++|++.|++++...|.+ +++.+.+|.++...|++++|+..|++.++..|+++. ++.
T Consensus 4 ~~~~~l~lG~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 77 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQD---PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---GYM 77 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH---HHH
T ss_conf 14899999999998789999999999999868999---999999999999869999999999987603850478---875
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 434445555---44311123458999999999998520010134565555555666666655566666544322345689
Q gi|254781174|r 136 LVGMSYAQM---IRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPR 212 (271)
Q Consensus 136 ~~a~~~~~~---~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~ 212 (271)
.+|..+... ..+.....+...+|+..++..++..|+...+ . +.+|..|...+++..|+..
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~--------------~~lg~~~~~~~~~~~a~~~ 140 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL---H--------------LQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH---H--------------HHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH---H--------------HHHHHHHHHCCCHHHHHHH
T ss_conf 0222210012347889987153999999998887449986999---9--------------9999999996899999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 9988652899811599999999999974987999999999978569997
Q gi|254781174|r 213 FQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGY 261 (271)
Q Consensus 213 ~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~ 261 (271)
++..+...|+ ++++..+|.+|..+|..++|.+.++......|++.
T Consensus 141 ~~~al~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 185 (217)
T 2pl2_A 141 LKQALALEDT----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHCCCC----CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 9999817998----46999985888864799999999999998599989
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus}
Probab=99.76 E-value=4.8e-16 Score=110.40 Aligned_cols=68 Identities=26% Similarity=0.196 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 55666665443223456899988652899811599999999999974987999999999978569997899
Q gi|254781174|r 194 VEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWAR 264 (271)
Q Consensus 194 ~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~ 264 (271)
..+|..|.+.|++..|+..|+.+++..|+.. ++++.+|.+|..+|..++|.+.++.....-|++.-..
T Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDNV---NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 0111000022259999999999998499989---9999999999985999999999999987398989999
No 8
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.74 E-value=2.6e-17 Score=117.74 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55443444555544311123458999999999998520010134565555555666666655566666544322345689
Q gi|254781174|r 133 VYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPR 212 (271)
Q Consensus 133 A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~ 212 (271)
..|..|++++++ +...+|++.|+.++..+|+++++.+|. +.+|..|+.+|+|..|+..
T Consensus 4 ~~Y~~a~~~~~~--------~~~~~A~~~~~~~i~~~p~~~~~~~a~--------------~~lg~~~~~~~~~~~A~~~ 61 (129)
T 2xev_A 4 TAYNVAFDALKN--------GKYDDASQLFLSFLELYPNGVYTPNAL--------------YWLGESYYATRNFQLAEAQ 61 (129)
T ss_dssp CHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCSSSTTHHHHH--------------HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_conf 999999999997--------899999999999998885984689999--------------9999999975009999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9988652899811599999999999974987999999999978569997899999860
Q gi|254781174|r 213 FQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVETLV 270 (271)
Q Consensus 213 ~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~l 270 (271)
|+.+++++|+++.++++++++|.+|..+|+.++|..++..+..+||+|.|.+.|...|
T Consensus 62 ~~~~~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~yP~s~~a~~a~~~L 119 (129)
T 2xev_A 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999987899806899999999999984999999999999998881999999999999
No 9
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.74 E-value=1.5e-15 Score=107.44 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
+.....+.|..+++.|+|++|+..|++++...|.. ..+.+.+|.++...|++++|+..|++.++..|+++. +++
T Consensus 7 ~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE---INN 80 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH---HHH
T ss_conf 99999999999998699999999999999868998---999999999999878999999999999862986212---356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHH--------------------HHHHHHHH
Q ss_conf 434445555443111234589999999999985--20010134565555555--------------------66666665
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVER--YTNSPYVKGARFYVTVG--------------------RNQLAAKE 193 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~--yP~S~ya~~A~~~l~~~--------------------~~~La~~e 193 (271)
..|.+++.+ .+...+|+..|+..+.. +|+. ..+...+..+ ...-..--
T Consensus 81 ~l~~~~~~~-------~~~~~eA~~~~~~al~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 150 (225)
T 2vq2_A 81 NYGWFLCGR-------LNRPAESMAYFDKALADPTYPTP---YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF 150 (225)
T ss_dssp HHHHHHHTT-------TCCHHHHHHHHHHHHTSTTCSCH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHH-------HCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 478999998-------17507665668999972236304---68875268888885899999999999998689989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 55666665443223456899988652899811599999999999974987999999999978569997899
Q gi|254781174|r 194 VEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWAR 264 (271)
Q Consensus 194 ~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~ 264 (271)
+.+|..|+..|++..|+..|+.++...|... ++++...+......|+.+.+..+...|..+||+|....
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~a~~~~~~l~~~~P~s~e~~ 219 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQ--ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999994999999999999984288888--99999999999987999999999999987688999999
No 10
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=6.6e-15 Score=103.74 Aligned_cols=185 Identities=14% Similarity=0.077 Sum_probs=135.6
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 80989999999999985304773026899877887765455567999998875401121101355544344455554431
Q gi|254781174|r 69 KEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDV 148 (271)
Q Consensus 69 ~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~ 148 (271)
+.|+|++|++.|++++...|.. +.+.+.+|.++...|++++|+..|++.++..|++. .+++.+|.++..+
T Consensus 35 elG~y~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~---- 104 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKED---AIPYINFANLLSSVNELERALAFYDKALELDSSAA---TAYYGAGNVYVVK---- 104 (243)
T ss_dssp -------CCTTHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT----
T ss_pred HCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHH----
T ss_conf 8589999999999999819998---99999999999987899999999999986098629---9999878999983----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1123458999999999998520010134565555-----------------55566666665556666654432234568
Q gi|254781174|r 149 PYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV-----------------TVGRNQLAAKEVEIGRYYLKRGEYVAAIP 211 (271)
Q Consensus 149 ~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l-----------------~~~~~~La~~e~~ia~~Y~~~~~y~aA~~ 211 (271)
+...+|+..|+..+...|+..........+ ..+....+..-..+|..+...+++..|+.
T Consensus 105 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 105 ----EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp ----TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf ----5605568888887764000699998778888888758999999999987087427766531013540263799999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99988652899811599999999999974987999999999978569997899999860
Q gi|254781174|r 212 RFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVETLV 270 (271)
Q Consensus 212 ~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~l 270 (271)
.|+.+++..|+. .++++.++.+|..+|+.++|.+.++....--|+..++-+...+|
T Consensus 181 ~~~~ai~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~A~~~~~ll 236 (243)
T 2q7f_A 181 QFAAVTEQDPGH---ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHCTTC---HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 999999878898---99999999999995999999999999998298989999989875
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.7e-15 Score=106.01 Aligned_cols=183 Identities=13% Similarity=0.052 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
.+..++..|..++..|+|++|+..|++++...|.+. .+.+.+|.+++..|++++|+..+++.++.+|+++. +++
T Consensus 303 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~ 376 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI---FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---VPN 376 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS---HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---HHH
T ss_pred CHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCH---HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHH---HHH
T ss_conf 404676521100011128999999999998498856---67663031100001479999999999986998468---887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43444555544311123458999999999998520010134565555555666666655566666544322345689998
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQL 215 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~ 215 (271)
.+|.++.. ++...+|+..|++.++..|+++.+.. .+..+.. ...++..+...++|..|+..|+.
T Consensus 377 ~lg~~~~~--------~~~~~~A~~~~~~al~l~p~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~A~~~~~k 440 (514)
T 2gw1_A 377 FFAEILTD--------KNDFDKALKQYDLAIELENKLDGIYV---GIAPLVG-----KATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHHH--------TTCHHHHHHHHHHHHHHHHTSSSCSS---CSHHHHH-----HHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHH--------HHCHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 57788787--------50599999999999872988889999---8999999-----87767788866589999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 865289981159999999999997498799999999997856999789
Q gi|254781174|r 216 VLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWA 263 (271)
Q Consensus 216 ~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~ 263 (271)
+++..|+.+ .+++.+|.+|..+|+.++|.+.++....--|.....
T Consensus 441 al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~kal~l~~~~~e~ 485 (514)
T 2gw1_A 441 ASKLDPRSE---QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp HHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 997399989---999999999998599999999999998658993999
No 12
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.69 E-value=5e-15 Score=104.45 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
.+...+..|..+...|++.+|...|++++...|.. .++.+.+|.++...+++++|+..+++.+...|.+.. +.+
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~ 241 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF---LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV---VHG 241 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH---HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH---HHH
T ss_conf 07999998899883486999999999998839760---999999999988568799999999999884975279---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------------------HHHHHHHHH
Q ss_conf 434445555443111234589999999999985200101345655555556--------------------666666555
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGR--------------------NQLAAKEVE 195 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~--------------------~~La~~e~~ 195 (271)
.+|.++.. ++...+|+..+++.+...|+++.+- ..+..+. ..-+.....
T Consensus 242 ~l~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 310 (388)
T 1w3b_A 242 NLACVYYE--------QGLIDLAIDTYRRAIELQPHFPDAY---CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp HHHHHHHH--------TTCHHHHHHHHHHHHHTCSSCHHHH---HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHH--------CCCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999998--------7999999999999997299989999---999999998477999999888776328603688778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 66666544322345689998865289981159999999999997498799999999997856999789
Q gi|254781174|r 196 IGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWA 263 (271)
Q Consensus 196 ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~ 263 (271)
.|..|.+.|++..|+..|+.+++..|+. +++++.+|.+|..+|+.++|...++......|+....
T Consensus 311 ~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a 375 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9999998789999999999999869898---9999999999998499999999999999739998999
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=8.3e-15 Score=103.17 Aligned_cols=201 Identities=11% Similarity=0.006 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
+..++..|..+++.|++++|+..|++++...|.+ +++.+.+|.++..+|++++|+..+...++..|...........
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T 1w3b_A 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999998699999999999999869998---9999999999998698343256532101037314678887621
Q ss_pred HHHH-------------------------------HH------------H--------------HHHHHHHHHHHHHHHH
Q ss_conf 3444-------------------------------55------------5--------------5443111234589999
Q gi|254781174|r 137 VGMS-------------------------------YA------------Q--------------MIRDVPYDQRATKLML 159 (271)
Q Consensus 137 ~a~~-------------------------------~~------------~--------------~~~~~~~d~~~~~~A~ 159 (271)
.... .. . .........+...+|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 189 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 02210107888888776664211479999987555441020788889999775049640799999889988348699999
Q ss_pred HHHHHHHHHHHCCHHHHH--------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999985200101345--------------655555---556666666555666665443223456899988652899
Q gi|254781174|r 160 QYMSRIVERYTNSPYVKG--------------ARFYVT---VGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSD 222 (271)
Q Consensus 160 ~~f~~~i~~yP~S~ya~~--------------A~~~l~---~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~ 222 (271)
..+++.+...|++.-+-. |..... .....-......+|..|.+.|++..|+..|+.+++..|+
T Consensus 190 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999988397609999999999885687999999999998849752799999999999879999999999999972999
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 81159999999999997498799999999997856999789
Q gi|254781174|r 223 AEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWA 263 (271)
Q Consensus 223 t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~ 263 (271)
. ++++..++.++..+|..++|.+.+.......|+....
T Consensus 270 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 307 (388)
T 1w3b_A 270 F---PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp C---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 8---9999999999998477999999888776328603688
No 14
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=2.6e-14 Score=100.29 Aligned_cols=196 Identities=8% Similarity=-0.053 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH---
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355---
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV--- 133 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A--- 133 (271)
++.++..|..+.+.|++++|+..|++.+...|.+. .+...+|.++...|++++|+..+++.+...|+.+.....
T Consensus 55 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 131 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999987999999999999987398869---999998899987174156999876444027307888765424
Q ss_pred ---------------------HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf ---------------------544344455554--------------431112345899999999999852001013456
Q gi|254781174|r 134 ---------------------YYLVGMSYAQMI--------------RDVPYDQRATKLMLQYMSRIVERYTNSPYVKGA 178 (271)
Q Consensus 134 ---------------------~y~~a~~~~~~~--------------~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A 178 (271)
.|..+...+... ......++...+|+..|+..++..|+++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--- 208 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL--- 208 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH---
T ss_conf 56666569999999999987789999999999997498620344401221025544999999999988618787999---
Q ss_pred HHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---------HHHHH
Q ss_conf 5555555--------------------666666655566666544322345689998865289981---------15999
Q gi|254781174|r 179 RFYVTVG--------------------RNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAE---------HAEEA 229 (271)
Q Consensus 179 ~~~l~~~--------------------~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~---------~~~eA 229 (271)
...+..+ +..-+.-.+.+|..|.+.|+|..|+..|+.+|...|+.. ....+
T Consensus 209 ~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ai~l~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999984789999999999998598989999999999998499999999999998689999872236669999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHH----HHHHHCC
Q ss_conf 9999999997498799999999----9978569
Q gi|254781174|r 230 MARLVEAYVALALMDEAREVVS----LIQERYP 258 (271)
Q Consensus 230 l~~l~~~y~~lg~~d~A~~~~~----~l~~~yP 258 (271)
...+..++..+|..|.|..... .+...||
T Consensus 289 ~~~l~~~l~~~~~~d~a~~~~~~~l~~~~~e~~ 321 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999889999999999982999986227
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A
Probab=99.67 E-value=3e-14 Score=99.88 Aligned_cols=200 Identities=11% Similarity=-0.028 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..+..++..|..+.+.|++++|+..|++++...|.. ..+.+.+|.++..+|++++|+..+++.+...|....+....
T Consensus 96 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 172 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN---QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 989999999999998799999999999998719998---99999999999983884102368889998681069998778
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--------------------HHHHHH
Q ss_conf 4----4344455554431112345899999999999852001013456555555--------------------566666
Q gi|254781174|r 135 Y----LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTV--------------------GRNQLA 190 (271)
Q Consensus 135 y----~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~--------------------~~~~La 190 (271)
. ..++.............+...+|+..|...+...|++.-+ .+...+.. +....+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~a~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 251 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP-DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
T ss_conf 777777777899999999987413999999999999848542014-7777799999882447779998999998699979
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 66555666665443223456899988652899811599999999999974987999999999978569997
Q gi|254781174|r 191 AKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGY 261 (271)
Q Consensus 191 ~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~ 261 (271)
.--+.+|..|...|++..|+..|+..++..|+.+ ++++.+|.+|..+|..++|.+.++....-.|++.
T Consensus 252 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 319 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYI---RSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999999987899999999999997499989---9999999999986999999999999987198683
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.3e-14 Score=99.66 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 68999999999998098-99999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 56 YQREVYEKAVLFLKEQN-FSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~-y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
.+...+..|..++..|+ ++.|+..|++++...|... .+...+|.++...|++++|+..|++.++..|+++. ++
T Consensus 89 ~~~~~~~l~~~~~~~~~~~e~A~~~~~ka~~l~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~ 162 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL---PM 162 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH---HH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HH
T ss_conf 9999999999999849979999999999998099989---99999999999879999999999999985113789---99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHH--------------
Q ss_conf 443444555544311123458999999999998520010134565555-----------5556666--------------
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV-----------TVGRNQL-------------- 189 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l-----------~~~~~~L-------------- 189 (271)
+.+|.++... +...+|...++..+...|+++.+......+ ..+...+
T Consensus 163 ~~~~~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 234 (330)
T 3hym_B 163 LYIGLEYGLT--------NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234 (330)
T ss_dssp HHHHHHHHHT--------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred HHHHHHHHHH--------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9988999981--------77166799999998618751022234677777401399999999999997075210111123
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf -6665556666654432234568999886528998115999999999999749879999999999785699978999
Q gi|254781174|r 190 -AAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARY 265 (271)
Q Consensus 190 -a~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~ 265 (271)
+.--..+|..|...|++..|+..|+.++...|+.. +++..+|.+|..+|+.++|.+.++....-.|++.+...
T Consensus 235 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 308 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA---STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS---HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 677765321357763449999999999998698989---99999999999859999999999999865999999999
No 17
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=6.2e-14 Score=98.08 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=136.9
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..++.+|..|..+...|+|++|+..|++++...|.. +.+...+|.++..+|++++|+..|++.++..|+++ .++
T Consensus 41 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~ 114 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAH 114 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH---HHH
T ss_conf 999999999999998799999999999999809998---99999999999885899999999765001383178---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHH-------H--HHHHHHH
Q ss_conf 443444555544311123458999999999998520010134565555555666------666-------6--5556666
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQ------LAA-------K--EVEIGRY 199 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~------La~-------~--e~~ia~~ 199 (271)
+.+|.+++.+ +...+|+..++..+...|+................. +.. . ...+..+
T Consensus 115 ~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (275)
T 1xnf_A 115 LNRGIALYYG--------GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186 (275)
T ss_dssp HHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHH
T ss_pred HHHHHHHHCC--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9862321023--------66999999999998729767999999999999849099999999999737733623468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHH
Q ss_conf 65443223456899988652899----81159999999999997498799999999997856999-789999
Q gi|254781174|r 200 YLKRGEYVAAIPRFQLVLANYSD----AEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG-YWARYV 266 (271)
Q Consensus 200 Y~~~~~y~aA~~~~~~~i~~yp~----t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s-~~~~~a 266 (271)
+......... +......+.. .+...++.+.+|.+|...|..++|.+.++.....-|++ .+++.+
T Consensus 187 ~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~a 255 (275)
T 1xnf_A 187 YLGNISEQTL---MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 255 (275)
T ss_dssp HTTSSCHHHH---HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9866532001---37899998888773812099999999999987899999999999988498669999999
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.9e-14 Score=101.07 Aligned_cols=156 Identities=11% Similarity=0.084 Sum_probs=62.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999809899999999999853047730268998778877654555679999988754011211013555443444
Q gi|254781174|r 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMS 140 (271)
Q Consensus 61 Y~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~ 140 (271)
...|...+..+++..|+..+++++...|. ..+.+.+|.++...|++++|+..|++.++..|+++ .+++.+|.+
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~ 313 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS---SVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT---HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHCCH
T ss_conf 97499999868899999987640034520----57776653346765668888888998987098540---467652110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 55554431112345899999999999852001013456555555566666665556666654432234568999886528
Q gi|254781174|r 141 YAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANY 220 (271)
Q Consensus 141 ~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~y 220 (271)
+..+ +...+|+..|+..+...|++..+ . +.+|..|.+.|++..|+..++.+++.+
T Consensus 314 ~~~~--------~~~~~A~~~~~~al~~~p~~~~a---~--------------~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 314 NFIL--------QNYDQAGKDFDKAKELDPENIFP---Y--------------IQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp HHHT--------TCTTHHHHHHHHHHHTCSSCSHH---H--------------HHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HCCC--------CHHHHHHHHHHHHHHHCCCCHHH---H--------------HHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 0011--------12899999999999849885667---6--------------630311000014799999999999869
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9981159999999999997498799999999
Q gi|254781174|r 221 SDAEHAEEAMARLVEAYVALALMDEAREVVS 251 (271)
Q Consensus 221 p~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~ 251 (271)
|+.+ +++..+|.+|..+|+.++|.+.+.
T Consensus 369 p~~~---~~~~~lg~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 369 PEAP---EVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTCS---HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCH---HHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 9846---888757788787505999999999
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=4.5e-13 Score=93.08 Aligned_cols=205 Identities=12% Similarity=0.072 Sum_probs=123.6
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
.+..++..|..++..|++++|+..|++++...|.. ..+.+.+|.++..+|++++|+..|++.+...|+++....+..
T Consensus 36 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCH
T ss_conf 89999999999998599999999999998729998---999999989987604356799998877504863100010000
Q ss_pred HHHH------------------------HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 4344------------------------455554--------------43111234589999999999985200101345
Q gi|254781174|r 136 LVGM------------------------SYAQMI--------------RDVPYDQRATKLMLQYMSRIVERYTNSPYVKG 177 (271)
Q Consensus 136 ~~a~------------------------~~~~~~--------------~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~ 177 (271)
..+. ..+... .......+...+|+..++..+...|++..+-.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 192 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 00126888877999999998526999999999999849442899999999998748840246788999997312478889
Q ss_pred HHHHH-----------HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHH
Q ss_conf 65555-----------555666------------------666655566666544322345689998865289981-159
Q gi|254781174|r 178 ARFYV-----------TVGRNQ------------------LAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAE-HAE 227 (271)
Q Consensus 178 A~~~l-----------~~~~~~------------------La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~-~~~ 227 (271)
....+ ..+... ........|..+.+.|++..|+..|+.++...|+.. ...
T Consensus 193 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 272 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999998544999999999999729898999998888998876676544576531588888878899983986310111
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999999999997498799999999997856999789
Q gi|254781174|r 228 EAMARLVEAYVALALMDEAREVVSLIQERYPQGYWA 263 (271)
Q Consensus 228 eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~ 263 (271)
.+...++.+|..+|..++|.+.++......|++.+.
T Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 308 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 000011100002225999999999999849998999
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A
Probab=99.63 E-value=4e-14 Score=99.20 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999999999809899999999999853047730268998778877654555679999988754011211
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESK 128 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~ 128 (271)
+..+.++|..+++.|+|++|+..|++++...|.. +.+.+.+|.+|..+|+|++|+..|++.++..|+++
T Consensus 25 a~~l~~~G~~~~~~g~y~~Ai~~y~~al~~~p~~---~~~~~~la~~y~~~g~~~~A~~~~~~al~l~p~~~ 93 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 9999999999998789999999999999839998---99999999999985999999999999998399989
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.62 E-value=1e-13 Score=96.74 Aligned_cols=199 Identities=15% Similarity=0.066 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
.+.+..+|..++.+|+|++|++.+++++...|... .+....+.+++..+++++|+..++++++.+|+++. +++.
T Consensus 22 ~~~~~~~a~~~~~~~~y~~A~~~~~~~l~~~p~~~---~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~ 95 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA---SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV---SWFA 95 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH---HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHH
T ss_conf 99999999999983999999999999998699989---99999999999869999999999999987899999---9999
Q ss_pred HHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH----HHH--
Q ss_conf 344455554431---------------------------11234589999999999985200101345655----555--
Q gi|254781174|r 137 VGMSYAQMIRDV---------------------------PYDQRATKLMLQYMSRIVERYTNSPYVKGARF----YVT-- 183 (271)
Q Consensus 137 ~a~~~~~~~~~~---------------------------~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~----~l~-- 183 (271)
+|.++....... ....+...+|+..|+..+...|++..+..-.. ...
T Consensus 96 l~~~~~~~~~~~e~A~~~~~ka~~l~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 175 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999984997999999999999809998999999999999879999999999999985113789999988999981771
Q ss_pred -----HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf -----556666------6665556666654432234568999886528998------11599999999999974987999
Q gi|254781174|r 184 -----VGRNQL------AAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDA------EHAEEAMARLVEAYVALALMDEA 246 (271)
Q Consensus 184 -----~~~~~L------a~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t------~~~~eAl~~l~~~y~~lg~~d~A 246 (271)
..+..+ ..-....|..|...+++..|+..+...++..+.. .....++..+|.++...|..++|
T Consensus 176 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66799999998618751022234677777401399999999999997075210111123677765321357763449999
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 999999978569997
Q gi|254781174|r 247 REVVSLIQERYPQGY 261 (271)
Q Consensus 247 ~~~~~~l~~~yP~s~ 261 (271)
.+.++......|++.
T Consensus 256 ~~~~~~al~~~p~~~ 270 (330)
T 3hym_B 256 LDYHRQALVLIPQNA 270 (330)
T ss_dssp HHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHCCCCH
T ss_conf 999999998698989
No 22
>2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=1e-14 Score=102.64 Aligned_cols=165 Identities=13% Similarity=0.128 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
+++.+..+|..+++.|+|++|+..|++++...|.+. ++.+.+|.++..+|++++|...+++.+...|+++ .+..
T Consensus 5 p~e~ll~~A~~l~~~g~~~eA~~~~~~~l~~~P~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~ 78 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG---DVKLAKADCLLETKQFELAQELLATIPLEYQDNS---YKSL 78 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH---HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH---HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH---HHHH
T ss_conf 099999999999986999999999999998788999---9999999999982983133799999876174102---4358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43444555544311123458999999999998520010134565555555666666655566666544322345689998
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQL 215 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~ 215 (271)
..+..+... +....|+..++..+...|++.. +. +..|..|...|++..|+..|..
T Consensus 79 ~~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~~---~~--------------~~la~~~~~~~~~~~A~~~l~~ 133 (176)
T 2r5s_A 79 IAKLELHQQ--------AAESPELKRLEQELAANPDNFE---LA--------------CELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHHHHHHHH--------HTSCHHHHHHHHHHHHSTTCHH---HH--------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--------HCHHHHHHHHHHHHHCCCCHHH---HH--------------HHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999871--------1319999999987611864089---99--------------9899998872329999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8652899811599999999999974987999999999
Q gi|254781174|r 216 VLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSL 252 (271)
Q Consensus 216 ~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~ 252 (271)
++...|+.. ...+...+++++..+|..|+|...++.
T Consensus 134 ~l~~d~~~~-~~~~~~~l~~~~~~lg~~d~a~~~yr~ 169 (176)
T 2r5s_A 134 ILKVNLGAQ-DGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHTTCTTTT-TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHCCCCC-HHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 998788864-799999999999985997599999999
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27}
Probab=99.58 E-value=2e-13 Score=95.06 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877-----------6545556799999887540
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQ-----------YSAGKYQQAASLGEEYITQ 123 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~-----------y~~~~y~~A~~~~~~fi~~ 123 (271)
..+...+..|..+.+.|++++|+..|++++...|.... +...+|.++ ...+++++|+..+++.++.
T Consensus 37 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 113 (217)
T 2pl2_A 37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH---HHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999999999869999999999987603850478---875022221001234788998715399999999888744
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11211013555443444555544311123458999999999998520010134565555555666666655566666544
Q gi|254781174|r 124 YPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKR 203 (271)
Q Consensus 124 ~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~ 203 (271)
.|++. .+++.+|.++..+ +...+|+..|+..+...|+. ++. ..+|..|++.
T Consensus 114 ~p~~~---~~~~~lg~~~~~~--------~~~~~a~~~~~~al~~~~~~----~~~--------------~~lg~~~~~~ 164 (217)
T 2pl2_A 114 NPRYA---PLHLQRGLVYALL--------GERDKAEASLKQALALEDTP----EIR--------------SALAELYLSM 164 (217)
T ss_dssp CTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCCCH----HHH--------------HHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHCCCCC----HHH--------------HHHHHHHHHC
T ss_conf 99869---9999999999996--------89999999999998179984----699--------------9985888864
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 322345689998865289981159999999999997498799999999
Q gi|254781174|r 204 GEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVS 251 (271)
Q Consensus 204 ~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~ 251 (271)
|+|..|+..|+.+++..|+.. +++..++.+|..+|..++|.+...
T Consensus 165 g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~eA~~aa~ 209 (217)
T 2pl2_A 165 GRLDEALAQYAKALEQAPKDL---DLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp TCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHTC------------
T ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 799999999999998599989---999999999998499999999997
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=1.1e-12 Score=90.75 Aligned_cols=175 Identities=11% Similarity=0.061 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
.+...+..|..+...|++++|+..+++.. ...+....+.++...++++.|+..+++.++..|+++. +..
T Consensus 100 ~~~~~~~~a~~~~~~~~~~~Al~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 168 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQGD--------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL---TQL 168 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCC--------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHCCC--------CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHH
T ss_conf 19999999999998799999999874536--------6555899999999869988899999999986425779---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43444555544311123458999999999998520010134565555555666666655566666544322345689998
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQL 215 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~ 215 (271)
..|.++... ..+...+|+..++..+...|+++.+ . ...|..|.+.|++..|+..|+.
T Consensus 169 ~~~~~~~~~------~~~~~~~A~~~~~~~~~~~p~~~~~---~--------------~~la~~~~~~g~~~~A~~~~~~ 225 (291)
T 3mkr_A 169 ATAWVSLAA------GGEKLQDAYYIFQEMADKCSPTLLL---L--------------NGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHH------CTTHHHHHHHHHHHHHHHSCCCHHH---H--------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHC------CCCHHHHHHHHHHHHHHHHCCCHHH---H--------------HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 983577750------5423999999888888750146999---9--------------8899999981988999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHCCCCHHHHHHH
Q ss_conf 865289981159999999999997498799999-9999978569997899999
Q gi|254781174|r 216 VLANYSDAEHAEEAMARLVEAYVALALMDEARE-VVSLIQERYPQGYWARYVE 267 (271)
Q Consensus 216 ~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~-~~~~l~~~yP~s~~~~~a~ 267 (271)
+++..|+.+ +++..++.++..+|..++|.+ +.+.+....|++.|.....
T Consensus 226 al~~~p~~~---~~~~~l~~~~~~~g~~~ea~~~~~~~l~~~~p~~~~~~~~~ 275 (291)
T 3mkr_A 226 ALDKDSGHP---ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 998689999---99999999999869919999999999973499979999999
No 25
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.56 E-value=2.1e-13 Score=95.01 Aligned_cols=191 Identities=11% Similarity=0.118 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 73689999999999980989999999999985304773026899877887765455567999998875401121101355
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV 133 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A 133 (271)
...+..++..|..+...|++++|+..|++.+...|.+. ...+...+|.++...|++++|+..|++.++..|+++....-
T Consensus 97 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 175 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG-TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE 175 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999999999984873889999999986387632-29999999999998599999999999998619034220149
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54434445555443111234589999999999985200101345655555556666666555666665443223456899
Q gi|254781174|r 134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRF 213 (271)
Q Consensus 134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~ 213 (271)
+...............+...+|+..++.+....|+. .+. ..+|..|...|+|..|+..+
T Consensus 176 ---~~~~l~~~~~~~~~~~~~~~~A~~~~~~l~~~~~~~----~~~--------------~~la~~~~~~g~~~eA~~~~ 234 (310)
T 3mv2_B 176 ---MILNLAESYIKFATNKETATSNFYYYEELSQTFPTW----KTQ--------------LGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp ---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH----HHH--------------HHHHHHHHHHTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHH--------------HHHHHHHHHCCCHHHHHHHH
T ss_conf ---999999999999987004999999999988649979----999--------------99999999869989999999
Q ss_pred HHHHHHCCCCHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9886528998115-------999999999999749879999999999785699978999998
Q gi|254781174|r 214 QLVLANYSDAEHA-------EEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVET 268 (271)
Q Consensus 214 ~~~i~~yp~t~~~-------~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~ 268 (271)
+.+++..|+.... .+++..++......| ++|.+.+..+....|++.|.+....
T Consensus 235 ~~al~~~~~~~~~~~~~~~~~~~l~n~~~~~~~~~--~~a~~~~~~l~~~~p~~~~~~~~~e 294 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG--LDTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT--CTTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99986290227777522147999999999998686--1199999999871968879999999
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A
Probab=99.55 E-value=5.5e-13 Score=92.55 Aligned_cols=165 Identities=12% Similarity=-0.018 Sum_probs=128.4
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53047730268998778877654555679999988754011211013555443444555544311123458999999999
Q gi|254781174|r 85 RDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSR 164 (271)
Q Consensus 85 ~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~ 164 (271)
..-+..+...+|.+.+|.+|...|++++|+..|++.++..|+++ .+++.+|.++..+ +...+|+..|+.
T Consensus 28 ~~~~~~~~~~day~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~~---~a~~~Lg~~~~~~--------g~~~~A~~~~~~ 96 (252)
T 2ho1_A 28 KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA---DAHAALAVVFQTE--------MEPKLADEEYRK 96 (252)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHH
T ss_conf 02314088999999999999985999999999999998399989---9999999999986--------999999999999
Q ss_pred HHHHHHCCHHHHHHHHHH-------H----HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 998520010134565555-------5----5566--------66666555666665443223456899988652899811
Q gi|254781174|r 165 IVERYTNSPYVKGARFYV-------T----VGRN--------QLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEH 225 (271)
Q Consensus 165 ~i~~yP~S~ya~~A~~~l-------~----~~~~--------~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~ 225 (271)
.++..|++..+......+ . .+.. .-+.--+.+|..|.+.|++..|+..|+.+++..|+.+
T Consensus 97 al~~~p~~~~~~~~la~~~~~~~~~~eA~~~~~~al~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~- 175 (252)
T 2ho1_A 97 ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP- 175 (252)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-
T ss_conf 9872997707889987889984548999999999998633751146541289998876999999999999998689989-
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 59999999999997498799999999997856999789
Q gi|254781174|r 226 AEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWA 263 (271)
Q Consensus 226 ~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~ 263 (271)
++++.++.+|...|+.++|...+..+....|++...
T Consensus 176 --~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 176 --SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211 (252)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf --999999999998699999999999998558799999
No 27
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics consortium, SGC, coiled coil, microtubule, motor protein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.54 E-value=2e-12 Score=89.27 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CC
Q ss_conf 8999999999998098999999999998530-----4773026899877887765455567999998875401-----12
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDF-----PFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQY-----PE 126 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~-----P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~-----P~ 126 (271)
+..+...|..+...|+|++|+..|++....+ +.......+...+|.++...|++++|+..+++.++.+ ++
T Consensus 43 a~~l~~Lg~~y~~~g~~~~Al~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999987999999999999999988743899889999999999999986887889987888999999861668
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1101355544344455554431112345899999999999852-----00101345655555556666666555666665
Q gi|254781174|r 127 SKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERY-----TNSPYVKGARFYVTVGRNQLAAKEVEIGRYYL 201 (271)
Q Consensus 127 s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~y-----P~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~ 201 (271)
+|....+++.+|.++.. ++...+|+..|++.+..+ |+++-..++. ..+|..|.
T Consensus 123 ~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~i~~~~~~~~~~~~a~~~--------------~~Lg~~~~ 180 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQN--------QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK--------------NNLASCYL 180 (283)
T ss_dssp CHHHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH--------------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH--------------HHHHHHHH
T ss_conf 86899999987176550--------375588999888899999986289998999999--------------99999998
Q ss_pred HHHHHHHHHHHHHHHHHH----------------------------------------------CCCCHHHHHHHHHHHH
Q ss_conf 443223456899988652----------------------------------------------8998115999999999
Q gi|254781174|r 202 KRGEYVAAIPRFQLVLAN----------------------------------------------YSDAEHAEEAMARLVE 235 (271)
Q Consensus 202 ~~~~y~aA~~~~~~~i~~----------------------------------------------yp~t~~~~eAl~~l~~ 235 (271)
+.|++..|+..|+.+++. -++.+....++..|+.
T Consensus 181 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~ 260 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA 260 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 76879999999999999877765544256678888887755521469999999999999999864388469999999999
Q ss_pred HHHHCCCHHHHHHHHHHH
Q ss_conf 999749879999999999
Q gi|254781174|r 236 AYVALALMDEAREVVSLI 253 (271)
Q Consensus 236 ~y~~lg~~d~A~~~~~~l 253 (271)
+|..+|..++|.+..+..
T Consensus 261 ~y~~~G~~~eA~~l~e~A 278 (283)
T 3edt_B 261 LYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
T ss_conf 999819999999999999
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=3.1e-13 Score=93.99 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 73689999999999980989999999999985304773026899877887765455567999998875401121101355
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV 133 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A 133 (271)
+..+..++..|..+...|++++|+..|++++...|.. .++...+|.++..++++++|+..+++.+...|+++. .
T Consensus 54 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 127 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSA---ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD---L 127 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH---H
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---H
T ss_conf 9989999999999998789999999999998609862---999998789999835605568888887764000699---9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Q ss_conf 5443444555544311123458999999999998520010134565-----------------55555566666665556
Q gi|254781174|r 134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGAR-----------------FYVTVGRNQLAAKEVEI 196 (271)
Q Consensus 134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~-----------------~~l~~~~~~La~~e~~i 196 (271)
+...+.++.. .+....|+..++..+...|+...+.... .+...+...-+.--+.+
T Consensus 128 ~~~~~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~l 199 (243)
T 2q7f_A 128 FYMLGTVLVK--------LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp HHHHHHHHHH--------TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9877888888--------87589999999999870874277665310135402637999999999998788989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 666654432234568999886528998115999999999
Q gi|254781174|r 197 GRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVE 235 (271)
Q Consensus 197 a~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~ 235 (271)
|..|.+.|++..|+..|+.+++..|+...+-.++-.||.
T Consensus 200 g~~~~~~g~~~~A~~~~~kal~l~P~~~~A~~~~~llg~ 238 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 999999599999999999999829898999998987589
No 29
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics consortium, SGC, coiled coil, microtubule, motor protein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.51 E-value=9.8e-13 Score=91.08 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985304773026899877887765455567999998875401-----1211013555443444555544311
Q gi|254781174|r 75 KAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQY-----PESKNVDYVYYLVGMSYAQMIRDVP 149 (271)
Q Consensus 75 ~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~-----P~s~~~~~A~y~~a~~~~~~~~~~~ 149 (271)
+|++.+++. .-|.+|....++..+|.+|..+|+|++|+..|++.++.+ ++++.+..++..+|.++..
T Consensus 26 ~AL~~~~~~--~g~~~p~~a~~l~~Lg~~y~~~g~~~~Al~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~------ 97 (283)
T 3edt_B 26 QALEDLEKT--SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK------ 97 (283)
T ss_dssp HHHHHHHHH--HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH------
T ss_conf 999999987--299998999999999999998799999999999999998874389988999999999999998------
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
Q ss_conf 123458999999999998520-----01013456555555566666665556666654432234568999886528----
Q gi|254781174|r 150 YDQRATKLMLQYMSRIVERYT-----NSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANY---- 220 (271)
Q Consensus 150 ~d~~~~~~A~~~f~~~i~~yP-----~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~y---- 220 (271)
++...+|+..+++.++.+- +++....+ ...+|..|...|++..|+..|+..++.+
T Consensus 98 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~lg~~~~~~g~~~~A~~~~~~al~i~~~~~ 161 (283)
T 3edt_B 98 --RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ--------------LNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH--------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH--------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf --68878899878889999998616688689999--------------99871765503755889998888999999862
Q ss_pred -CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf -9981159999999999997498799999999997
Q gi|254781174|r 221 -SDAEHAEEAMARLVEAYVALALMDEAREVVSLIQ 254 (271)
Q Consensus 221 -p~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~ 254 (271)
|+++...+++..||.+|..+|..++|.+.+....
T Consensus 162 ~~~~~~~a~~~~~Lg~~~~~~g~~~~A~~~~~~al 196 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 89998999999999999987687999999999999
No 30
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.50 E-value=2.9e-13 Score=94.21 Aligned_cols=176 Identities=11% Similarity=0.027 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999980989999999999985304773026899877887765455567999998875401121101355544344
Q gi|254781174|r 60 VYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGM 139 (271)
Q Consensus 60 lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~ 139 (271)
.+.+|...+..+.+.+|+..+++++...|.+ +.+++.+|.++..+|++++|+..+++.++..|+... ..++..+|.
T Consensus 69 ~~~~~~~l~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 144 (310)
T 3mv2_B 69 KLGKVLDLYVQFLDTKNIEELENLLKDKQNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT-TELLLLAIE 144 (310)
T ss_dssp TTHHHHHHHHHHHTTTCCHHHHHTTTTSCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
T ss_conf 9999999999872588999999987509999---999999999999848738899999999863876322-999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45555443111234589999999999985200101345655555556666666555666665443223456899988652
Q gi|254781174|r 140 SYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLAN 219 (271)
Q Consensus 140 ~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~ 219 (271)
++.. .+...+|...|+..++..|+++-...-. + ..++ ...+..+...+++..|+..++.+...
T Consensus 145 ~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~--~----~~l~---~~~~~~~~~~~~~~~A~~~~~~l~~~ 207 (310)
T 3mv2_B 145 VALL--------NNNVSTASTIFDNYTNAIEDTVSGDNEM--I----LNLA---ESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HHHH--------TTCHHHHHHHHHHHHHHSCHHHHHHHHH--H----HHHH---HHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred HHHH--------CCCHHHHHHHHHHHHHHCCCCCCCHHHH--H----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9998--------5999999999999986190342201499--9----9999---99999998700499999999998864
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 89981159999999999997498799999999997856999
Q gi|254781174|r 220 YSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG 260 (271)
Q Consensus 220 yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s 260 (271)
.|+ ..++..++.+|..+|..++|...+.......|+.
T Consensus 208 ~~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 244 (310)
T 3mv2_B 208 FPT----WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp SCS----HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 997----9999999999998699899999999998629022
No 31
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=7.3e-12 Score=86.01 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=145.6
Q ss_pred HHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-
Q ss_conf 89999999-99998098999999999998530477---30268998778877654555679999988754011211013-
Q gi|254781174|r 57 QREVYEKA-VLFLKEQNFSKAYEYFNQCSRDFPFA---GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD- 131 (271)
Q Consensus 57 ~~~lY~~a-~~~~~~~~y~~A~~~f~~i~~~~P~s---~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~- 131 (271)
+.++|.++ ..+...++|++|++.|++....++.. ..+..+...+|.+|...+++++|+..+++.++.+++.....
T Consensus 36 A~~~y~~aa~~f~~~k~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~g~~~~ 115 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999999998789999999999999999886997999999999999998769879999999999998775374168
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --555443444555544311123458999999999998520010134565555555666666655566666544322345
Q gi|254781174|r 132 --YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAA 209 (271)
Q Consensus 132 --~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA 209 (271)
.++...|..+. .+++...+|+..+++.+..++.......+. .--..+|..|...|+|..|
T Consensus 116 a~~~~~~la~~~~-------~~~~~~~~A~~~y~kA~~~~~~~~~~~~~~-----------~~~~~la~~~~~~~~y~~A 177 (292)
T 1qqe_A 116 GANFKFELGEILE-------NDLHDYAKAIDCYELAGEWYAQDQSVALSN-----------KCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999989999-------872109999999999998755368889899-----------9999999999984369999
Q ss_pred HHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHH
Q ss_conf 6899988652899811----599999999999974987999999999978---569997899999860
Q gi|254781174|r 210 IPRFQLVLANYSDAEH----AEEAMARLVEAYVALALMDEAREVVSLIQE---RYPQGYWARYVETLV 270 (271)
Q Consensus 210 ~~~~~~~i~~yp~t~~----~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~---~yP~s~~~~~a~~~l 270 (271)
+..|+.++...|+.+. +...+..++.++..+|+...|.+.+..... .||+|+..+...+++
T Consensus 178 ~~~y~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~A~~~~~~~~~~~~~~~~s~E~~~l~~l~ 245 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999999873413465688999999999999980899999999999997587888709999999999
No 32
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.47 E-value=1e-12 Score=91.01 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
+-.+|++|...++.|+|++|++.|+++.. | .+++.+++|.+|+.+|+|++|+..|++.|+..|+. +.+++.
T Consensus 6 ~~~l~~~g~~~~~~~d~~~Al~~f~~i~~--~----~~~~~~nlG~~y~~~~~~~~A~~~f~~Ai~l~p~~---~~a~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD--P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH---HHHHHH
T ss_conf 99999999999985899999999865689--8----89999999999998699999999999999866045---788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34445555443111234589999999999985200101345655555556666666555666665443223456899988
Q gi|254781174|r 137 VGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLV 216 (271)
Q Consensus 137 ~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~ 216 (271)
+|.+++.+ +...+|+..|+..+...|+++........+. .....++--+.+|..|.+.|++..|+..++..
T Consensus 77 ~g~~~~~~--------~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~A 147 (213)
T 1hh8_A 77 RGMLYYQT--------EKYDLAIKDLKEALIQLRGNQLIDYKILGLQ-FKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHT--------TCHHHHHHHHHHHHHTTTTCSEEECGGGTBC-CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999985--------4589999999999985836725789986432-36537999999999999969999999999999
Q ss_pred HHHCCCCHH--HHHHHHHHH
Q ss_conf 652899811--599999999
Q gi|254781174|r 217 LANYSDAEH--AEEAMARLV 234 (271)
Q Consensus 217 i~~yp~t~~--~~eAl~~l~ 234 (271)
+..-|+... ...|+..+.
T Consensus 148 l~~~~~~~~~~i~~al~~~~ 167 (213)
T 1hh8_A 148 TSMKSEPRHSKIDKAMECVW 167 (213)
T ss_dssp HTTCCSGGGGHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHH
T ss_conf 83799826599999999998
No 33
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, cytoplasm, plasmid, virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A
Probab=99.43 E-value=2e-12 Score=89.27 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 73689999999999980989999999999985304773026899877887765455567999998875401121101355
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV 133 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A 133 (271)
....+.+|..|..+++.|+|++|+..|++++...|.+ +++.+.+|.+++..|+|++|+..+++.++..|+++. +
T Consensus 33 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~ 106 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT---P 106 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH---H
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---H
T ss_conf 7679999999999998699999999999999878999---999999999999859868999999999985557869---9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 5443444555544311123458999999999998520010134565555555
Q gi|254781174|r 134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVG 185 (271)
Q Consensus 134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~ 185 (271)
++.+|.|+..+ +...+|+..|+..++..|+++....+...+..+
T Consensus 107 ~~~~g~~~~~~--------g~~~~A~~~~~~ai~~~~~~~~~~~a~~~L~~l 150 (151)
T 3gyz_A 107 VFHTGQCQLRL--------KAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150 (151)
T ss_dssp HHHHHHHHHHT--------TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--------CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 98777999987--------899999999999986399849999999999861
No 34
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=8.7e-12 Score=85.54 Aligned_cols=134 Identities=21% Similarity=0.337 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999809899999999999853047730268998778877654555679999988754011211013555443
Q gi|254781174|r 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLV 137 (271)
Q Consensus 58 ~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~ 137 (271)
+..|+.|..+++.|++++|+..|++++..+|.. ..+.+.++.++...++++.|+..+++.++..|+++. +++.+
T Consensus 2 ~ay~~lg~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~ 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH---HHHHH
T ss_conf 889999999999689999999999998739542---999999999999807615546899999985987728---99988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44455554431112345899999999999852001013456555555566666665556666654432234568999886
Q gi|254781174|r 138 GMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVL 217 (271)
Q Consensus 138 a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i 217 (271)
|.++... +...+|+..|++.+...|+++. +. +.+|..+...|++..|+..|+.++
T Consensus 76 a~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~---~~--------------~~~~~~~~~~~~~~~A~~~~~~al 130 (136)
T 2fo7_A 76 GNAYYKQ--------GDYDEAIEYYQKALELDPRSAE---AW--------------YNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHTT--------TCHHHHHHHHHHHHHHCTTCHH---HH--------------HHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHC--------CCHHHHHHHHHHHHHHCCCHHH---HH--------------HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 1899984--------8899999999999871986199---99--------------999999999689999999999999
Q ss_pred HHCCC
Q ss_conf 52899
Q gi|254781174|r 218 ANYSD 222 (271)
Q Consensus 218 ~~yp~ 222 (271)
+..|.
T Consensus 131 ~l~P~ 135 (136)
T 2fo7_A 131 ELDPR 135 (136)
T ss_dssp HHSTT
T ss_pred HHCCC
T ss_conf 87859
No 35
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.8e-12 Score=87.66 Aligned_cols=120 Identities=9% Similarity=0.014 Sum_probs=103.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 76736899999999999809899999999999853047730268998778877654555679999988754011211013
Q gi|254781174|r 52 TDVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD 131 (271)
Q Consensus 52 ~~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~ 131 (271)
......+.+.++|..+|+.|+|.+|+..|++++...|..+......+++|.+|+.+++|++|+..+++.++..|++..
T Consensus 23 ~~~~~~~~l~~~Gn~~f~~~~y~~Ai~~y~kAl~l~~~~~~~~~~~~n~~~~~~~~~~~~~A~~~~~~ai~~~p~~~~-- 100 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK-- 100 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH--
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--
T ss_conf 788899999999999999689999999999998745487779999999999999856888999989999987899899--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 555443444555544311123458999999999998520010134565555
Q gi|254781174|r 132 YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV 182 (271)
Q Consensus 132 ~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l 182 (271)
+++.+|.++..+ +...+|+..|+..+...|++.-+.+...++
T Consensus 101 -~~~~lg~~~~~~--------~~~~~A~~~~~kal~l~P~n~~~~~~L~~l 142 (148)
T 2dba_A 101 -ALYRRSQALEKL--------GRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp -HHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf -999999999987--------899999999999998588989999999876
No 36
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=6.4e-12 Score=86.33 Aligned_cols=135 Identities=24% Similarity=0.307 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 89987788776545556799999887540112110135554434445555443111234589999999999985200101
Q gi|254781174|r 95 KSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 95 ~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
+|.+.+|.+|+..|++++|+..|++.++.+|.... ++..++.++.. .+...+|...+++.++..|+.+.
T Consensus 2 ~ay~~lg~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~--------~~~~~~a~~~~~~~l~~~p~~~~ 70 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---AWYNLGNAYYK--------QGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHH--------HTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHH--------HCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 88999999999968999999999999873954299---99999999998--------07615546899999985987728
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 34565555555666666655566666544322345689998865289981159999999999997498799999999997
Q gi|254781174|r 175 VKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQ 254 (271)
Q Consensus 175 a~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~ 254 (271)
+ . +.+|..|...|++..|+..|+.+++..|+.+ ++++.++.++..+|+.++|.+.++...
T Consensus 71 ~---~--------------~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al 130 (136)
T 2fo7_A 71 A---W--------------YNLGNAYYKQGDYDEAIEYYQKALELDPRSA---EAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp H---H--------------HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred H---H--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9---9--------------9881899984889999999999987198619---999999999999689999999999999
Q ss_pred HHCCCC
Q ss_conf 856999
Q gi|254781174|r 255 ERYPQG 260 (271)
Q Consensus 255 ~~yP~s 260 (271)
.-.|+|
T Consensus 131 ~l~P~n 136 (136)
T 2fo7_A 131 ELDPRS 136 (136)
T ss_dssp HHSTTC
T ss_pred HHCCCC
T ss_conf 878598
No 37
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A*
Probab=99.41 E-value=5.5e-12 Score=86.72 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..+...+..|..+++.|++++|+..|++++...|.. .++...+|.++..+|++++|+..+++.++..|+++. ++
T Consensus 21 ~~~~a~~~Lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~Lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---~~ 94 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG---IA 94 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH---HH
T ss_conf 999999999999998789999999999999829899---999999999999859999999999999971999999---99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 44344455554431112345899999999999852001013
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYV 175 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya 175 (271)
+.+|.++.+ .+...+|+..|++.+..-|+.+.+
T Consensus 95 ~~lg~~~~~--------~g~~~~A~~~~~~Al~l~P~~~~~ 127 (568)
T 2vsy_A 95 LWLGHALED--------AGQAEAAAAAYTRAHQLLPEEPYI 127 (568)
T ss_dssp HHHHHHHHH--------TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHH--------CCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 999999998--------297123357777652238862377
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=1.8e-11 Score=83.65 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 66666544322345689998865289981159999999999997498799999999997856
Q gi|254781174|r 196 IGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERY 257 (271)
Q Consensus 196 ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~y 257 (271)
+|..|...|++..|+..|+.+++.-|+.+ ++++.++.+|..+|..++|...++.+....
T Consensus 119 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFP---PAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 68888885899999999999998689989---999999999999499999999999998428
No 39
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.38 E-value=1e-11 Score=85.14 Aligned_cols=113 Identities=11% Similarity=-0.031 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 73689999999999980989999999999985304773026899877887765455567999998875401121101355
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV 133 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A 133 (271)
+...+.+|..|..+++.|+|++|+..|++++...|.+ +.+.+.+|.+++.+++|++|+..|++.++..|+++ .+
T Consensus 18 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~Ai~~~~~a~~~~~~~~---~~ 91 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP---RF 91 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCH---HH
T ss_conf 5649999999999998699999999999999859599---99999999999986985789999997562486539---99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 54434445555443111234589999999999985200101345655
Q gi|254781174|r 134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF 180 (271)
Q Consensus 134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~ 180 (271)
++.+|.++..+ +...+|+..|+..++..|+++-......
T Consensus 92 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (148)
T 2vgx_A 92 PFHAAECLLQX--------GELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHHT--------TCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999855--------7899999999999861899778999999
No 40
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.36 E-value=1.8e-10 Score=77.86 Aligned_cols=196 Identities=13% Similarity=0.066 Sum_probs=139.4
Q ss_pred HHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 89999-99999998098999999999998530477---302689987788776545556799999887540112110135
Q gi|254781174|r 57 QREVY-EKAVLFLKEQNFSKAYEYFNQCSRDFPFA---GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDY 132 (271)
Q Consensus 57 ~~~lY-~~a~~~~~~~~y~~A~~~f~~i~~~~P~s---~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~ 132 (271)
+...| +.|..+...|+|++|++.|++....++.. ..+..+...+|.++..++++++|+..+++.+..|........
T Consensus 35 Aa~~y~~ag~~y~~~~~~~~A~~~~~kA~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 114 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999999998789999999999999862523797899999999999998726589999989999999886189067
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5--54434445555443111234589999999999985200101345655555556666666555666665443223456
Q gi|254781174|r 133 V--YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAI 210 (271)
Q Consensus 133 A--~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~ 210 (271)
+ .+..+..... .+...+|+..|++.+..+........ .+.--..+|..|.+.|+|..|+
T Consensus 115 aa~~~~~~~~~~~--------~~~~~~a~~~y~~A~~i~~~~~~~~~-----------~~~~~~~la~~~~~~~~y~eA~ 175 (307)
T 2ifu_A 115 AAMALDRAGKLME--------PLDLSKAVHLYQQAAAVFENEERLRQ-----------AAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHCCCCHH-----------HHHHHHHHHHHHHHHCCHHHHH
T ss_conf 7788877889987--------14599999999999999987599647-----------9999974889988716899999
Q ss_pred HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHC
Q ss_conf 8999886528---99811599999999999974987999999999978--5699978999998609
Q gi|254781174|r 211 PRFQLVLANY---SDAEHAEEAMARLVEAYVALALMDEAREVVSLIQE--RYPQGYWARYVETLVK 271 (271)
Q Consensus 211 ~~~~~~i~~y---p~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~--~yP~s~~~~~a~~~l~ 271 (271)
..|+..+..+ .+.+....++..++.+|..+|+...|.+.+..... .|++|+..+..+.||+
T Consensus 176 ~~~~~a~~i~~~~~~~~~~~~~~~~l~~~~l~~gd~~~A~~~~~~a~~~~~f~~s~e~~~~~~Ll~ 241 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 999999999998689099999999799999986899999999999855666799899999999999
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=3.5e-10 Score=76.20 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..+..++..|..+...|++++|+..|++++...|... .+.+.+|.+++..|+++.|+..+++.++..|+.+.. .
T Consensus 75 ~~~~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~ 148 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR---S 148 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---H
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH---H
T ss_conf 9899999999999885899999999765001383178---999986232102366999999999998729767999---9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 4434445555443111234589999999999985200101--------------------34565555555666666655
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY--------------------VKGARFYVTVGRNQLAAKEV 194 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y--------------------a~~A~~~l~~~~~~La~~e~ 194 (271)
...+++...... .. .+.. +......-+.... +.............+++-.+
T Consensus 149 ~~~~~~~~~~~~------~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (275)
T 1xnf_A 149 LWLYLAEQKLDE------KQ--AKEV-LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF 219 (275)
T ss_dssp HHHHHHHHHHCH------HH--HHHH-HHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC------HH--HHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999998490------99--9999-99999737733623468999986653200137899998888773812099999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 56666654432234568999886528998-11599999999999974987999
Q gi|254781174|r 195 EIGRYYLKRGEYVAAIPRFQLVLANYSDA-EHAEEAMARLVEAYVALALMDEA 246 (271)
Q Consensus 195 ~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t-~~~~eAl~~l~~~y~~lg~~d~A 246 (271)
.+|..|...|++..|+..|+.++..-|+. ....-++..|++.....+...++
T Consensus 220 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~a~~~L~~l~~~~~~~~~~ 272 (275)
T 1xnf_A 220 YLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999998789999999999998849866999999999999828647679866
No 42
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transcription activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=5.9e-10 Score=74.85 Aligned_cols=196 Identities=12% Similarity=0.028 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-----
Q ss_conf 999999999998098999999999998530477---302689987788776545556799999887540112110-----
Q gi|254781174|r 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFA---GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKN----- 129 (271)
Q Consensus 58 ~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s---~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~----- 129 (271)
..+...|..++..|++++|+..|+++....|.. .....+...+|.++...|++++|+..+++.+...|....
T Consensus 54 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999999999879999999999999997475368799999999999999981548999999999999978604666769
Q ss_pred HHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 1355544344455554-------------------------------431112345899999999999852001013456
Q gi|254781174|r 130 VDYVYYLVGMSYAQMI-------------------------------RDVPYDQRATKLMLQYMSRIVERYTNSPYVKGA 178 (271)
Q Consensus 130 ~~~A~y~~a~~~~~~~-------------------------------~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A 178 (271)
...++..+|.+++.+. .......+...+|...+...+...+.++.....
T Consensus 134 ~a~~~~~la~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999998799899999999977765400017899999987899997244799999999999998757753247
Q ss_pred HHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHH
Q ss_conf 5555555----------------------------6666666555666665443223456899988652---89981159
Q gi|254781174|r 179 RFYVTVG----------------------------RNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLAN---YSDAEHAE 227 (271)
Q Consensus 179 ~~~l~~~----------------------------~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~---yp~t~~~~ 227 (271)
...+... ..........+|+.|...|++..|+..+..++.. .++.+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999999986032899999999998764136846799999999999983462889999999999998758966899
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999749879999999999
Q gi|254781174|r 228 EAMARLVEAYVALALMDEAREVVSLI 253 (271)
Q Consensus 228 eAl~~l~~~y~~lg~~d~A~~~~~~l 253 (271)
+++..++.+|..+|..++|...++..
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~A 319 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999879999999999999
No 43
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.34 E-value=3.6e-11 Score=81.94 Aligned_cols=115 Identities=10% Similarity=-0.049 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 73689999999999980989999999999985304773026899877887765455567999998875401121101355
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV 133 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A 133 (271)
...++.+|..|..+++.|+|++|+..|+.++...|.. ..+.+.+|.++..+|+|++|+..|++.++..|+++. +
T Consensus 15 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~ 88 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR---F 88 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---H
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---H
T ss_conf 8559999999999998699999999999999839987---999999739999948989999999999874438899---9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 5443444555544311123458999999999998520010134565555
Q gi|254781174|r 134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV 182 (271)
Q Consensus 134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l 182 (271)
++.+|.++... +...+|+..|+..+...|+++.......+.
T Consensus 89 ~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (142)
T 2xcb_A 89 PFHAAECHLQL--------GDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHHC--------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99767999885--------899999999999987399997899999999
No 44
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.33 E-value=1.4e-12 Score=90.12 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
++++.++|..+++.|+|++|++.|++++...|.+ ..+.+.+|.+++.+++|++|+..+++.++..|++. .|++.
T Consensus 6 Ae~lk~~Gn~~~~~g~y~~Ai~~y~kal~~~p~~---~~~~~~la~~~~~l~~~~~Ai~~~~~al~l~p~~~---~a~~~ 79 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---KGYYR 79 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHH
T ss_conf 9999999999998589999999999999809998---99999999999983999999999999998499989---99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 344455554431112345899999999999852001013456555555566666665
Q gi|254781174|r 137 VGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKE 193 (271)
Q Consensus 137 ~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e 193 (271)
+|.++..+ +...+|+..|++.++..|+++ +|...+..+...+..++
T Consensus 80 lg~~~~~~--------g~~~~A~~~~~~al~l~P~~~---~a~~~l~~~~~~~~~~~ 125 (477)
T 1wao_1 80 RAASNMAL--------GKFRAALRDYETVVKVKPHDK---DAKMKYQECNKIVKQKA 125 (477)
T ss_dssp HHHHHHHH--------TCHHHHHHHHHHHHHHSTTCT---THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHH
T ss_conf 99999985--------999999999999898688979---99999999999988888
No 45
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.49A {Deinococcus radiodurans R1}
Probab=99.33 E-value=1.4e-10 Score=78.44 Aligned_cols=181 Identities=14% Similarity=0.023 Sum_probs=130.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHH
Q ss_conf 99809899999999999853047730268998778877654555679999988754011211---013555443444555
Q gi|254781174|r 67 FLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESK---NVDYVYYLVGMSYAQ 143 (271)
Q Consensus 67 ~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~---~~~~A~y~~a~~~~~ 143 (271)
.|+.|+|..|.+.++.++...|. ...+.+.+|.+|..+|+|++|+..+++.+...+... ....++..+|.++..
T Consensus 2 a~~~~~y~~A~~~~~~~l~~~~~---~~~a~~~LG~~~~~~g~~~eA~~~~~~a~~~~~~~~~~~~~a~a~~~lg~~~~~ 78 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPAT---ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHCCCHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 54247999999999998768975---599999999999987999999999999999898858986899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C
Q ss_conf 5443111234589999999999985200101345655555556666666555666665443223456899988652---8
Q gi|254781174|r 144 MIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLAN---Y 220 (271)
Q Consensus 144 ~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~---y 220 (271)
.+...+|+..++..+..++...-.... .......+|..+...+.+..|...+...+.. -
T Consensus 79 --------~~~~~~A~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~ 140 (203)
T 3gw4_A 79 --------AGNWDAARRCFLEERELLASLPEDPLA----------ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHSCCCHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred --------HCCHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf --------076777688877888763654211268----------89988757899886110488779999999999874
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHH
Q ss_conf 99811599999999999974987999999999978---5699978999998
Q gi|254781174|r 221 SDAEHAEEAMARLVEAYVALALMDEAREVVSLIQE---RYPQGYWARYVET 268 (271)
Q Consensus 221 p~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~---~yP~s~~~~~a~~ 268 (271)
.+.+....++..||.+|..+|..++|.+.+..-.. +..+........+
T Consensus 141 ~~~~~~a~~~~~Lg~~~~~~g~~~~A~~~~~~Al~l~~~~~d~~~~~~i~~ 191 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMT 191 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 897579999999999999978999999999999999998799899999999
No 46
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=2.9e-11 Score=82.52 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 67368999999999998098999999999998530477302689987788776545556799999887540112110135
Q gi|254781174|r 53 DVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDY 132 (271)
Q Consensus 53 ~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~ 132 (271)
+...++.++.+|..+++.|+|.+|+..|++++...|.. ..+.+.+|.+++.++++++|+..+++.++..|+++.
T Consensus 8 ~~~~~e~l~~~G~~~~~~~~y~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--- 81 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK--- 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---
T ss_conf 79999999999999999589999999999999868998---999984889988727768899999999988632379---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 554434445555443111234589999999999985200101
Q gi|254781174|r 133 VYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 133 A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
+++.+|.++..+ +...+|+..|+..++..|+++.
T Consensus 82 ~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~ 115 (131)
T 2vyi_A 82 AYGRMGLALSSL--------NKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHCC--------CCHHHHHHHHHHHHHHCCCCHH
T ss_conf 998899998502--------5699999999999976969899
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.33 E-value=4.5e-11 Score=81.37 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
+++++-++|..+|++|+|++|+..|++.+...|.+ +.+...+|.+|..+|+|++|+..+++.++..|++. .|++
T Consensus 3 ~a~~lk~~Gn~~~~~~~y~~Ai~~y~~Ai~~~p~~---~~~~~n~a~~y~~l~~~~~A~~~~~~al~l~p~~~---~a~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHH
T ss_conf 19999999999998699999999999999858998---99999999999985998999999999997198578---9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 43444555544311123458999999999998520010
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSP 173 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ 173 (271)
.+|.++..+ +...+|+..|+..+...|+..
T Consensus 77 ~~g~~~~~~--------~~~~~A~~~~~kal~l~p~~~ 106 (281)
T 2c2l_A 77 FLGQCQLEM--------ESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHCCCCH
T ss_conf 999999987--------765788899999987494213
No 48
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.32 E-value=4.8e-10 Score=75.37 Aligned_cols=174 Identities=9% Similarity=-0.073 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
....+...|..+...|++..|+..+.+.....|... .....+.+|.++...|++++|+..+++..... +..
T Consensus 64 ~~~~~~~la~~~~~~~~~~~a~~~l~~~l~~~~~~~-~~~~~~~~a~~~~~~~~~~~Al~~~~~~~~~~--------~~~ 134 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-NTTFLLMAASIYFYDQNPDAALRTLHQGDSLE--------CMA 134 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHH--------HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC--------HHH
T ss_conf 399999999999878988999999999998688921-19999999999998799999999874536655--------589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43444555544311123458999999999998520010134565555555666666655566666544322345689998
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQL 215 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~ 215 (271)
..|.++.. ++...+|...++..+...|++..+.-. +.++.++...+++..|+..++.
T Consensus 135 ~~~~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~---------------~~~~~~~~~~~~~~~A~~~~~~ 191 (291)
T 3mkr_A 135 MTVQILLK--------LDRLDLARKELKKMQDQDEDATLTQLA---------------TAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHHHH--------TTCHHHHHHHHHHHHHHCTTCHHHHHH---------------HHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCHHHHHHHHHHHHHHCCCCHHHHHH---------------HHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999998--------699888999999999864257799999---------------8357775054239999998888
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 8652899811599999999999974987999999999978569997899
Q gi|254781174|r 216 VLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWAR 264 (271)
Q Consensus 216 ~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~ 264 (271)
++...|+++ +++..+|.+|..+|..++|.+.+.......|+....-
T Consensus 192 ~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 237 (291)
T 3mkr_A 192 MADKCSPTL---LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHHHSCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 887501469---9998899999981988999999999998689999999
No 49
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=1.4e-09 Score=72.66 Aligned_cols=184 Identities=10% Similarity=0.016 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110135554
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYY 135 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y 135 (271)
.+...+..|......|+++.|...++++....|.+ ........|..+...++++.|+..|++.++..|+++. ++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 394 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---VYV 394 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHH
T ss_conf 17899999999863021899999999877626614--5899999999999806689999999999984899799---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43444555544311123458999999999998520010134565555555666666655566666544322345689998
Q gi|254781174|r 136 LVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQL 215 (271)
Q Consensus 136 ~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~ 215 (271)
..|...+.. .+...+|...|+..+...|+++-.- ...|.++.+.|++..|+..|+.
T Consensus 395 ~~a~l~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~~~~~~~g~~~~Ar~~~e~ 450 (530)
T 2ooe_A 395 TAALMEYYC-------SKDKSVAFKIFELGLKKYGDIPEYV-----------------LAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHH-------TCCHHHHHHHHHHHHHHHTTCHHHH-----------------HHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-------CCCHHHHHHHHHHHHHHCCCCHHHH-----------------HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999886-------5479999999999986499969999-----------------9999999888899999999999
Q ss_pred HHHHCCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 86528998115-999999999999749879999999999785699978999998
Q gi|254781174|r 216 VLANYSDAEHA-EEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVET 268 (271)
Q Consensus 216 ~i~~yp~t~~~-~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~ 268 (271)
++...|.++.. .+.....++--...|+.++|.+.++.....+|+.........
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~E~~~G~~~~a~~~~~r~~~~~p~~~~~~~~~~ 504 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETAL 504 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHTTCHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 986689986899999999999999879999999999999986856633124799
No 50
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.28 E-value=1.2e-10 Score=78.81 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 73689999999999980989999999999985304773026899877887765455567999998875401121101355
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV 133 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A 133 (271)
...++.+..+|..+++.|+|.+|+..|++++...|.. ..+..++|.+|+.+|++++|+..+++.++..|+++. +
T Consensus 10 ~~~A~~l~~~Gn~~~~~~~y~~Ai~~y~kal~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---a 83 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---G 83 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---H
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH---H
T ss_conf 9999999999999999589999999999999839988---899997889999856513579999999983755789---9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 544344455554431112345899999999999852001013
Q gi|254781174|r 134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYV 175 (271)
Q Consensus 134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya 175 (271)
++.+|.++..+ +...+|+..|+..+...|+++-+
T Consensus 84 ~~~~g~~~~~~--------~~~~~A~~~~~~al~l~~~~~~~ 117 (166)
T 1a17_A 84 YYRRAASNMAL--------GKFRAALRDYETVVKVKPHDKDA 117 (166)
T ss_dssp HHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999995--------99999999999998729698999
No 51
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.28 E-value=3.9e-11 Score=81.77 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
....|+.|..+++.|++++|+..|++++...|.. ..+...+|.++...+++++|+..+++.++..|+++. +++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~~i~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 90 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA---VHAA 90 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH---HHHH
T ss_conf 5999999999999699999999999999869987---999999999999848802446888999997989899---9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 34445555443111234589999999999985200101
Q gi|254781174|r 137 VGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 137 ~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
+|.++..+ +...+|+..+++.+...|+.+.
T Consensus 91 la~~~~~~--------g~~~~A~~~~~~~l~~~P~~~~ 120 (121)
T 1hxi_A 91 LAVSHTNE--------HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHH--------HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999995--------9999999999999986849878
No 52
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.27 E-value=8.7e-11 Score=79.72 Aligned_cols=105 Identities=16% Similarity=0.296 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..++..|..|..+++.|+|++|++.|+++....|.. ..+...+|.++...+++++|+..+++.++.+|+++. ++
T Consensus 7 ~~~eay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~ai~~~p~~~~---~~ 80 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AW 80 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH---HH
T ss_conf 639999999999999689999999999998759566---999999999999828822679999999986899869---99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 443444555544311123458999999999998520010
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSP 173 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ 173 (271)
+.+|.++.++ +...+|+..|++.+...|+.+
T Consensus 81 ~~la~~~~~~--------~~~~~A~~~~~~al~~~P~~~ 111 (125)
T 1na0_A 81 YNLGNAYYKQ--------GDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHCHHHHCC--------CCHHHHHHHHHHHHHHCCCCH
T ss_conf 9767476602--------759999999999998788979
No 53
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.26 E-value=1.2e-10 Score=78.93 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 26899877887765455567999998875401121101355544344455554431112345899999999999852001
Q gi|254781174|r 93 ARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 93 a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
.+++.+.+|.+++.+|+|++|+..|++.+...|.+. .++..+|.++... +...+|+..+++.+...|++
T Consensus 8 ~~eay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~A~~~~~~ai~~~p~~ 76 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCC
T ss_conf 399999999999996899999999999987595669---9999999999982--------88226799999999868998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 013456555555566666665556666654432234568999886528998115999999999999749
Q gi|254781174|r 173 PYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALA 241 (271)
Q Consensus 173 ~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg 241 (271)
+.+ . +.+|..|.+.|++..|+..|+.++...|+.+ +++..++.+|.++|
T Consensus 77 ~~~---~--------------~~la~~~~~~~~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~G 125 (125)
T 1na0_A 77 AEA---W--------------YNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAKQNLGNAKQKQG 125 (125)
T ss_dssp HHH---H--------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHC
T ss_pred HHH---H--------------HHHCHHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCC
T ss_conf 699---9--------------9767476602759999999999998788979---99999999999774
No 54
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.26 E-value=1.2e-10 Score=78.90 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
...|.++|..+++.|+|.+|+..|++++...|.. +.+...+|.++...|++++|+..+++.++..|+++. +++.
T Consensus 4 ~~~L~~~G~~~~~~g~y~~A~~~~~~ai~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---GYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH---HHHH
T ss_conf 9999999999999699999999999999868998---999999999999848832000689999986989799---9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 3444555544311123458999999999998520010134
Q gi|254781174|r 137 VGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVK 176 (271)
Q Consensus 137 ~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~ 176 (271)
+|.++..+ +...+|+..|+..+...|+++-+.
T Consensus 78 lg~~~~~~--------~~~~~A~~~~~~a~~l~p~~~~~~ 109 (118)
T 1elw_A 78 KAAALEFL--------NRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHHHHHHT--------TCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999994--------999999999999997198989999
No 55
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.25 E-value=5.3e-11 Score=80.98 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999998530477302689987788776545556799999887540112110135554434445555443111
Q gi|254781174|r 71 QNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPY 150 (271)
Q Consensus 71 ~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~ 150 (271)
|+...|...|..+....|. -.++.+.+|.++|..|+|++|+..|++.+...|+++. +++.+|.+++.+
T Consensus 1 g~~~~~~~~~~~~~~i~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~lg~~~~~~------ 68 (148)
T 2vgx_A 1 GPLGSGGGTIAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---FFLGLGACRQAM------ 68 (148)
T ss_dssp -----CCCSHHHHTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT------
T ss_pred CCHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHC------
T ss_conf 9777899999999868956---4999999999999869999999999999985959999---999999999986------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 23458999999999998520010134565555555666666655566666544322345689998865289981159999
Q gi|254781174|r 151 DQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAM 230 (271)
Q Consensus 151 d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl 230 (271)
+...+|+..|+..+...|+++. +. +.+|..|...|+|..|+..|+.+++..|+++......
T Consensus 69 --~~~~~Ai~~~~~a~~~~~~~~~---~~--------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (148)
T 2vgx_A 69 --GQYDLAIHSYSYGAVMDIXEPR---FP--------------FHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp --TCHHHHHHHHHHHHHHSTTCTH---HH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred --CCHHHHHHHHHHHHCCCCCCHH---HH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf --9857899999975624865399---99--------------9999999855789999999999986189977899999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781174|r 231 ARLVEAY 237 (271)
Q Consensus 231 ~~l~~~y 237 (271)
.++....
T Consensus 130 ~~~~~~l 136 (148)
T 2vgx_A 130 TRVSSML 136 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 56
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.24 E-value=1.1e-09 Score=73.21 Aligned_cols=202 Identities=10% Similarity=0.140 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 899999999999809899999999999853047730268998778877654--555679999988754011211013555
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSA--GKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~--~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
.+.+...+..+.+++++++|++.+++++...|.+. .+....|.++... +++.+|+..+++.++.+|++.. ++
T Consensus 33 ~~~~~~l~~~~~~~~~~e~Al~~~~~al~~nP~~~---~a~~~~~~~~~~l~~~~~~~Al~~~~~~l~~~p~~~~---~~ 106 (306)
T 3dra_A 33 KQIMGLLLALMKAEEYSERALHITELGINELASHY---TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---IW 106 (306)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHH---HH
T ss_conf 99999999999858960999999999998898879---9999999999985666799999999999987987679---99
Q ss_pred HHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 443444555544311123------------------------------------45899999999999852001013456
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQ------------------------------------RATKLMLQYMSRIVERYTNSPYVKGA 178 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~------------------------------------~~~~~A~~~f~~~i~~yP~S~ya~~A 178 (271)
+.+|.++..+.. .+... ....+++..++..+...|+..-+...
T Consensus 107 ~~~~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 185 (306)
T 3dra_A 107 NYRQLIIGQIME-LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHH-HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999998402-6888998999998627766314001589999877763341212999999999987449840899999
Q ss_pred HHHH-----------------HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 5555-----------------5556666----------666555666665443223456899988652899811599999
Q gi|254781174|r 179 RFYV-----------------TVGRNQL----------AAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMA 231 (271)
Q Consensus 179 ~~~l-----------------~~~~~~L----------a~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~ 231 (271)
.... ....... .......+..+...+++..|+..++.+++..|+++ .++.
T Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~ 262 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS---FALE 262 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHH
T ss_conf 9999997020543244789999987787748355799999999999998876479999999999986499989---9999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-C--CCHHHHHHHH
Q ss_conf 99999997498799999999997856-9--9978999998
Q gi|254781174|r 232 RLVEAYVALALMDEAREVVSLIQERY-P--QGYWARYVET 268 (271)
Q Consensus 232 ~l~~~y~~lg~~d~A~~~~~~l~~~y-P--~s~~~~~a~~ 268 (271)
.+|.+|..+|+.++|.+.++.+...+ | .+-|.=...+
T Consensus 263 ~lg~~y~~~g~~~eA~~~y~~l~~~~DP~r~~yw~~~~~~ 302 (306)
T 3dra_A 263 TLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999879999999999999873592329999999974
No 57
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.22 E-value=6.7e-10 Score=74.56 Aligned_cols=121 Identities=12% Similarity=0.165 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999809899999999999853047730------------26899877887765455567999998875401
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGV------------ARKSLLMSAFVQYSAGKYQQAASLGEEYITQY 124 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~------------a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~ 124 (271)
+..+-++|..+|+.|+|.+|+..|++++...|.... ...+..++|.||+++++|++|+..+++.++..
T Consensus 147 a~~~ke~Gn~~f~~g~y~~Ai~~Y~kAl~~~~~~~~~~~~~~~~~~~l~~~~~~Nla~~y~k~~~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 99999999999985999999999999998574443123466765537899999889999999388899999999987634
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1211013555443444555544311123458999999999998520010134565555555666666
Q gi|254781174|r 125 PESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAA 191 (271)
Q Consensus 125 P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~ 191 (271)
|++.. ++|.+|.+++.+ +...+|+..|+..+...|+++ ++...+..+...+.+
T Consensus 227 p~n~~---a~~~~g~~~~~~--------~~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 227 SNNEK---GLSRRGEAHLAV--------NDFELARADFQKVLQLYPNNK---AAKTQLAVCQQRIRR 279 (336)
T ss_dssp TTCHH---HHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHHHHHH
T ss_pred CCCHH---HHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHH
T ss_conf 12379---999999999986--------899999999999998499999---999999999999999
No 58
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.22 E-value=3.9e-10 Score=75.89 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999999998098999999999998530477302-------------68998778877654555679999988754
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVA-------------RKSLLMSAFVQYSAGKYQQAASLGEEYIT 122 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a-------------~~A~~~la~~~y~~~~y~~A~~~~~~fi~ 122 (271)
.+..+.++|..+|+.|+|.+|+..|++.+...|..... ..+..++|.||..+++|++|+..+++.|+
T Consensus 37 ~a~~lke~Gn~~fk~g~y~~Ai~~Y~kAL~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~y~~~~~~~~Ai~~~~~aL~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999998699999999999998538343101045778762315899999999999986899999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 0112110135554434445555443111234589999999999985200101345655555556666
Q gi|254781174|r 123 QYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQL 189 (271)
Q Consensus 123 ~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~L 189 (271)
..|++. .|++.+|.++... +...+|+..|+..+...|+.+. +...+..+...+
T Consensus 117 l~p~~~---~a~~~~g~~~~~l--------g~~~~A~~~~~kal~l~P~n~~---~~~~l~~~~~~~ 169 (198)
T 2fbn_A 117 IDKNNV---KALYKLGVANMYF--------GFLEEAKENLYKAASLNPNNLD---IRNSYELCVNKL 169 (198)
T ss_dssp HSTTCH---HHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHH
T ss_pred HCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH
T ss_conf 698869---9999999999997--------7999999999999972989999---999999999999
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.22 E-value=4.1e-09 Score=69.99 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999999999809-899999999999853047730268998778877654555679999988754011211013555443
Q gi|254781174|r 59 EVYEKAVLFLKEQ-NFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLV 137 (271)
Q Consensus 59 ~lY~~a~~~~~~~-~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~ 137 (271)
..+.+|..+...+ +|.+|+..+++++...|.+ .++....|.++..+|++++|+..+++.++..|++.. +++.+
T Consensus 133 aw~~r~~~l~~l~~~~~~al~~~~~~l~~~pk~---~~~~~~~g~~~~~l~~~~~Al~~~~~al~~~p~n~~---a~~~~ 206 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH---AWQHR 206 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHH
T ss_conf 999999999980748999999999999878998---899999999999825799999999999863865689---88898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 44455554431112345899999999999852001
Q gi|254781174|r 138 GMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 138 a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
|.++... +...+|+..++.+++..|..
T Consensus 207 ~~~~~~~--------~~~~~al~~~~~~i~~dp~n 233 (382)
T 2h6f_A 207 QWVIQEF--------KLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHH--------TCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHCCCCC
T ss_conf 9999972--------31689999999999829973
No 60
>2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.20 E-value=8.8e-11 Score=79.70 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 89987788776545556799999887540112110135554434445555443111234589999999999985200101
Q gi|254781174|r 95 KSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 95 ~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
+.++..|..++..|++++|+..+++.++.+|+++. +++.+|.++..+ +...+|...++.++...|+++.
T Consensus 7 e~ll~~A~~l~~~g~~~eA~~~~~~~l~~~P~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~ 75 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---VKLAKADCLLET--------KQFELAQELLATIPLEYQDNSY 75 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---HHHHHHHHHHHT--------TCHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999869999999999999987889999---999999999982--------9831337999998761741024
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 34565555555666666655566666544322345689998865289981159999999999997498799999999997
Q gi|254781174|r 175 VKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQ 254 (271)
Q Consensus 175 a~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~ 254 (271)
.. ...+..+...+....|+..++..+...|+.. ++.+.++.+|...|..++|.+.+..+.
T Consensus 76 ~~-----------------~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~l~~~l 135 (176)
T 2r5s_A 76 KS-----------------LIAKLELHQQAAESPELKRLEQELAANPDNF---ELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp HH-----------------HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-----------------HHHHHHHHHHHCHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 35-----------------8999999871131999999998761186408---999989999887232999999999999
Q ss_pred HHCCCCH
Q ss_conf 8569997
Q gi|254781174|r 255 ERYPQGY 261 (271)
Q Consensus 255 ~~yP~s~ 261 (271)
...|+..
T Consensus 136 ~~d~~~~ 142 (176)
T 2r5s_A 136 KVNLGAQ 142 (176)
T ss_dssp TTCTTTT
T ss_pred HHCCCCC
T ss_conf 8788864
No 61
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.19 E-value=4e-10 Score=75.88 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----
Q ss_conf 6899999999999809899999999999853047730268998778877654555679999988754011211013----
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD---- 131 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~---- 131 (271)
.++.+|+.|..+++.|+|++|++.|++.+...|.. ..+.+.+|.+|+.+|+|++|+..|++.+...|.++.++
T Consensus 36 ~~~~~~nlG~~y~~~~~~~~A~~~f~~Ai~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 112 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 89999999999998699999999999999866045---788877999999854589999999999985836725789986
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf ---------5554434445555443111234589999999999985200101
Q gi|254781174|r 132 ---------YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 132 ---------~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
.++|.+|.++..+ +...+|++.++..+..-|+.+.
T Consensus 113 ~~~~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~l~~Al~~~~~~~~ 156 (213)
T 1hh8_A 113 GLQFKLFACEVLYNIAFMYAKK--------EEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TBCCEEEHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHCCCCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHCCCCCCH
T ss_conf 4323653799999999999996--------9999999999999837998265
No 62
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.6e-09 Score=72.40 Aligned_cols=189 Identities=13% Similarity=0.046 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCH--
Q ss_conf 689999999999980989999999999985304773---026899877887765-45556799999887540112110--
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAG---VARKSLLMSAFVQYS-AGKYQQAASLGEEYITQYPESKN-- 129 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~---~a~~A~~~la~~~y~-~~~y~~A~~~~~~fi~~~P~s~~-- 129 (271)
....+.+.|..+.+.|++.+|++.+++.+..++... .+..+...+|..++. .+++++|+..|++.++.++....
T Consensus 76 ~a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~g~~~~a~~~~~~la~~~~~~~~~~~~A~~~y~kA~~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999987698799999999999987753741689999999989999872109999999999998755368889
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -1355544344455554431112345899999999999852001013456555555566666665556666654432234
Q gi|254781174|r 130 -VDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVA 208 (271)
Q Consensus 130 -~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~a 208 (271)
...++..+|.++.. .+...+|+..|++.+...|+++.... .....-+.+|..|+..|++..
T Consensus 156 ~~~~~~~~la~~~~~--------~~~y~~A~~~y~~a~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~d~~~ 217 (292)
T 1qqe_A 156 LSNKCFIKCADLKAL--------DGQYIEASDIYSKLIKSSMGNRLSQW----------SLKDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTTSSCTTTGG----------GHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHCHHHHH----------HHHHHHHHHHHHHHHCCCHHH
T ss_conf 899999999999998--------43699999999999987341346568----------899999999999998089999
Q ss_pred HHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 568999886528998115999--9999999997--49879999999999785699978999
Q gi|254781174|r 209 AIPRFQLVLANYSDAEHAEEA--MARLVEAYVA--LALMDEAREVVSLIQERYPQGYWARY 265 (271)
Q Consensus 209 A~~~~~~~i~~yp~t~~~~eA--l~~l~~~y~~--lg~~d~A~~~~~~l~~~yP~s~~~~~ 265 (271)
|+..|+..++..|+.+...+. +..+++++.. ++...+|...+..+. +-.+|...
T Consensus 218 A~~~~~~~~~~~~~~~~s~E~~~l~~l~~a~~~~d~e~~~~a~~~yd~~~---~ld~~~~~ 275 (292)
T 1qqe_A 218 AARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM---RLDKWKIT 275 (292)
T ss_dssp HHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS---CCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HCCHHHHH
T ss_conf 99999999975878887099999999999998279999999999998465---34689999
No 63
>2e2e_A Formate-dependent nitrite reductase complex NRFG subunit; TPR, cytochrome C biogenesis, O157:H7 EDL933, lyase; 2.05A {Escherichia coli}
Probab=99.18 E-value=2.5e-10 Score=77.05 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=112.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99980989999999999985304773026899877887765455567999998875401121101355544344455554
Q gi|254781174|r 66 LFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMI 145 (271)
Q Consensus 66 ~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~ 145 (271)
.+.+.++++.|+..+++.+...|.+ .++.+.+|.+|...|++++|+..|++.+...|+++. +++..|.+++...
T Consensus 19 ~~~~~~~~~~ai~~l~~~l~~~P~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~a~~l~~~~ 92 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---LYAALATVLYYQA 92 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---HHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHC
T ss_conf 9885799999999999999988999---999999999999969999999999999985863279---9987899999863
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 43111234589999999999985200101345655555556666666555666665443223456899988652899811
Q gi|254781174|r 146 RDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEH 225 (271)
Q Consensus 146 ~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~ 225 (271)
+.....+|+..++..+..-|+..- +. +.+|..|+..|+|..|+..|+.+++.-|....
T Consensus 93 -----~~~~~~ea~~~~~~al~~~p~~~~---~~--------------~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 150 (177)
T 2e2e_A 93 -----SQHMTAQTRAMIDKALALDSNEIT---AL--------------MLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp -----TTCCCHHHHHHHHHHHHHCTTCHH---HH--------------HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred -----CCCCCHHHHHHHHHHHHCCCCCHH---HH--------------HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf -----876312468999899871999899---99--------------99999999978999999999999865999655
Q ss_pred HHHHHHHH
Q ss_conf 59999999
Q gi|254781174|r 226 AEEAMARL 233 (271)
Q Consensus 226 ~~eAl~~l 233 (271)
....+..+
T Consensus 151 ~~~l~~~i 158 (177)
T 2e2e_A 151 RTQLVESI 158 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 64
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A*
Probab=99.17 E-value=2e-09 Score=71.80 Aligned_cols=190 Identities=9% Similarity=-0.057 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 89999999999980--9899999999999853047730268998778-87765455567999998875401121101355
Q gi|254781174|r 57 QREVYEKAVLFLKE--QNFSKAYEYFNQCSRDFPFAGVARKSLLMSA-FVQYSAGKYQQAASLGEEYITQYPESKNVDYV 133 (271)
Q Consensus 57 ~~~lY~~a~~~~~~--~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la-~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A 133 (271)
+...+..|...... +++.+|+..+++++...|....+ ....+ ..+...+.+..|+..+++.++..|+.. .+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~al~~~~~~i~~~p~~~---~a 181 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC---WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY---SS 181 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH---HH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH---HH
T ss_conf 999999758887607735999999999997248345789---988999999742462889999999998588748---99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5443444555544311123458999999999998520010134565555--------55566666665556666654432
Q gi|254781174|r 134 YYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYV--------TVGRNQLAAKEVEIGRYYLKRGE 205 (271)
Q Consensus 134 ~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l--------~~~~~~La~~e~~ia~~Y~~~~~ 205 (271)
++.+|.++.... ...+|...++..+...|+..........+ ..............+..+...+.
T Consensus 182 ~~~lg~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (331)
T 3dss_A 182 WHYRSCLLPQLH--------PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTV 253 (331)
T ss_dssp HHHHHHHHHHHS--------CCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHCC--------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999806--------788899888878872858889999999846111999999999874761003689999866
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 2345689998865289981159999999999997498799999999997856999
Q gi|254781174|r 206 YVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG 260 (271)
Q Consensus 206 y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s 260 (271)
+..|+..++.+++.-|+.+....++..++.+|..+|..++|.+.+..+..-=|..
T Consensus 254 ~~~a~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~eA~~~~~kai~ldP~~ 308 (331)
T 3dss_A 254 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999998688997999999999999986489999999999999879886
No 65
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, cytoplasm, plasmid, virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A
Probab=99.17 E-value=3.5e-10 Score=76.20 Aligned_cols=118 Identities=12% Similarity=0.006 Sum_probs=77.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85304773026899877887765455567999998875401121101355544344455554431112345899999999
Q gi|254781174|r 84 SRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMS 163 (271)
Q Consensus 84 ~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~ 163 (271)
....+.++...++.+.+|..++..|+|++|+..|++.+...|.++ .+++.+|.++..+ +...+|+..|+
T Consensus 26 ~~~~~~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~--------~~~~~A~~~~~ 94 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV---DYIMGLAAIYQIK--------EQFQQAADLYA 94 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHH
T ss_conf 998877976799999999999986999999999999998789999---9999999999985--------98689999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 999852001013456555555566666665556666654432234568999886528998115999
Q gi|254781174|r 164 RIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEA 229 (271)
Q Consensus 164 ~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eA 229 (271)
..+...|+++.+ . +.+|..|...|++..|+..|+.+++..|+.+....+
T Consensus 95 ~a~~~~p~~~~~---~--------------~~~g~~~~~~g~~~~A~~~~~~ai~~~~~~~~~~~a 143 (151)
T 3gyz_A 95 VAFALGKNDYTP---V--------------FHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp HHHHHSSSCCHH---H--------------HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHCCCCHHH---H--------------HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999855578699---9--------------877799998789999999999998639984999999
No 66
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.17 E-value=5.8e-10 Score=74.91 Aligned_cols=118 Identities=15% Similarity=0.082 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 68998778877654555679999988754011211013555443444555544311123458999999999998520010
Q gi|254781174|r 94 RKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSP 173 (271)
Q Consensus 94 ~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ 173 (271)
.+++...|..++..|+|++|+..|++.++..|++. .+++..|.|+..+ +...+|+..++..+...|++.
T Consensus 12 ~e~l~~~G~~~~~~~~y~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~p~~~ 80 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---VYFCNRAAAYSKL--------GNYAGAVQDCERAICIDPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999995899999999999998689989---9998488998872--------776889999999998863237
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 134565555555666666655566666544322345689998865289981159999999999997498
Q gi|254781174|r 174 YVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALAL 242 (271)
Q Consensus 174 ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~ 242 (271)
. +. +.+|..|...|++..|+..|+.+++..|+.+ ++...++.++.+++.
T Consensus 81 ~---~~--------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~l~e 129 (131)
T 2vyi_A 81 K---AY--------------GRMGLALSSLNKHVEAVAYYKKALELDPDNE---TYKSNLKIAELKLRE 129 (131)
T ss_dssp H---HH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHTT
T ss_pred H---HH--------------HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCC
T ss_conf 9---99--------------8899998502569999999999997696989---999999999998738
No 67
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=1.8e-08 Score=66.19 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 6736899999999999809899999999999853047730268998778877654555679999988754011211
Q gi|254781174|r 53 DVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESK 128 (271)
Q Consensus 53 ~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~ 128 (271)
++..|..+++.|..++..|+|+.|...|++.+...|. .+.....++.+.-..++.+.|...|++.+...|.++
T Consensus 10 ~~~~p~~~~~~a~~~~~~~~~e~A~~~f~~~L~~~ps---~~lw~~yl~~~~~~~~~~~~a~~~~e~al~~~~~~~ 82 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYN---LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYW 82 (493)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCC---HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8899999999999998788999999999999876979---999999999999756879999999999997587671
No 68
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A
Probab=99.15 E-value=7.1e-10 Score=74.41 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 689999999999980989999999999985304773------------02689987788776545556799999887540
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAG------------VARKSLLMSAFVQYSAGKYQQAASLGEEYITQ 123 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~------------~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~ 123 (271)
....+.++|..+|+.|+|..|++.|++.+...+... ......+++|.||+++++|++|+..+++.++.
T Consensus 267 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~kAl~~l~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99988766789997689999999999999998764267655552133789999999999999858999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 112110135554434445555443111234589999999999985200101345655555556666
Q gi|254781174|r 124 YPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQL 189 (271)
Q Consensus 124 ~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~L 189 (271)
.|++. .|+|++|.++..+ +...+|+..|+..+...|+.. +++..+..+...+
T Consensus 347 dp~n~---ka~~~~g~~~~~~--------~~~e~A~~~~~kal~l~P~n~---~~~~~l~~l~~~~ 398 (457)
T 1kt0_A 347 DSANE---KGLYRRGEAQLLM--------NEFESAKGDFEKVLEVNPQNK---AARLQISMCQKKA 398 (457)
T ss_dssp STTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH
T ss_conf 88776---9999999999986--------899999999999998589989---9999999999999
No 69
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A*
Probab=99.15 E-value=6.3e-10 Score=74.69 Aligned_cols=144 Identities=11% Similarity=0.016 Sum_probs=122.0
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 09899999999999853047730268998778877654555679999988754011211013555443444555544311
Q gi|254781174|r 70 EQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVP 149 (271)
Q Consensus 70 ~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~ 149 (271)
.||+.+|+..|++++...|.. ..+.+.+|.++..+|++++|+..|++.++..|+++ .+++.+|.++.++
T Consensus 2 ~~D~~~Al~~l~~al~~~P~~---~~a~~~Lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~Lg~~~~~~----- 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---EAVARLGRVRWTQ----- 70 (568)
T ss_dssp -------------------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---HHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC-----
T ss_conf 998899999999999968999---99999999999987899999999999998298999---9999999999985-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 12345899999999999852001013456555555566666665556666654432234568999886528998115999
Q gi|254781174|r 150 YDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEA 229 (271)
Q Consensus 150 ~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eA 229 (271)
+...+|+..|++.++..|+..- +. +.+|..|.+.|++..|+..|+..++.-|+.+ .+
T Consensus 71 ---g~~~~A~~~~~~al~l~P~~~~---~~--------------~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~~ 127 (568)
T 2vsy_A 71 ---QRHAEAAVLLQQASDAAPEHPG---IA--------------LWLGHALEDAGQAEAAAAAYTRAHQLLPEEP---YI 127 (568)
T ss_dssp ---TCHHHHHHHHHHHHHHCTTCHH---HH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HH
T ss_pred ---CCHHHHHHHHHHHHHCCCCCHH---HH--------------HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCH---HH
T ss_conf ---9999999999999971999999---99--------------9999999982971233577776522388623---77
Q ss_pred HHHHHHHHHHCCCHHHHH
Q ss_conf 999999999749879999
Q gi|254781174|r 230 MARLVEAYVALALMDEAR 247 (271)
Q Consensus 230 l~~l~~~y~~lg~~d~A~ 247 (271)
+..++.+...+++.+...
T Consensus 128 ~~~l~~~~~~l~dw~~~~ 145 (568)
T 2vsy_A 128 TAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHHHHHHHHHTTCCTTHH
T ss_pred HHHHHHHHHHHCCCCHHH
T ss_conf 888887777640221035
No 70
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=9e-10 Score=73.81 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999998098999999999998530477-------------302689987788776545556799999887540
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFA-------------GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQ 123 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s-------------~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~ 123 (271)
++.+=+.|..+++.|+|.+|++.|++.+...+.. +....+..++|.||.++++|++|+..+++.|+.
T Consensus 223 A~~lK~~Gn~~fk~g~y~~Ai~~Y~kAL~~l~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~kl~~y~~Ai~~~~kaL~l 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHCCHHHCCHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999985999999999999995130021000005555419116999999999999848889999999999984
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 112110135554434445555443111234589999999999985200101345655555556666
Q gi|254781174|r 124 YPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQL 189 (271)
Q Consensus 124 ~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~L 189 (271)
.|++. .|+|.+|.++..+ +...+|+..|++.++..|++. ++...+..+...+
T Consensus 303 dp~~~---ka~~~~g~a~~~l--------g~~e~A~~~~~kal~l~P~n~---~~~~~l~~~~~~l 354 (370)
T 1ihg_A 303 DPSNT---KALYRRAQGWQGL--------KEYDQALADLKKAQEIAPEDK---AIQAELLKVKQKI 354 (370)
T ss_dssp CTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH
T ss_conf 99989---9999999999986--------999999999999998499989---9999999999999
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transcription activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=6.1e-08 Score=63.10 Aligned_cols=187 Identities=9% Similarity=-0.024 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HH
Q ss_conf 8999999999998098999999999998530477302--689987788776545556799999887540112110---13
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVA--RKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKN---VD 131 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a--~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~---~~ 131 (271)
++...-+|..++..|++++|+..|++++...|.+... ..+...+|.+++..|++++|+..+++.++..|..+. ..
T Consensus 14 ae~~~l~A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999999988799999999999985488999299999999999999987999999999999999747536879999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55544344455554431112345899999999999852001013456555555566666665556666654432234568
Q gi|254781174|r 132 YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIP 211 (271)
Q Consensus 132 ~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~ 211 (271)
.+...+|.++.. .+...+|...+++.+...|........ ..+.-....|..|+..|++..|..
T Consensus 94 ~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~---------~~a~~~~~la~~~~~~g~~~~a~~ 156 (373)
T 1hz4_A 94 WSLIQQSEILFA--------QGFLQTAWETQEKAFQLINEQHLEQLP---------MHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCTTST---------HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHCCCCCH---------HHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999998--------154899999999999997860466676---------999999999999998799899999
Q ss_pred HHHHHHHHCCCCH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9998865289981--159999999999997498799999999997856999
Q gi|254781174|r 212 RFQLVLANYSDAE--HAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG 260 (271)
Q Consensus 212 ~~~~~i~~yp~t~--~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s 260 (271)
.++..+...|... ....++..++..+...|..++|...........+..
T Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 207 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 999977765400017899999987899997244799999999999998757
No 72
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.11 E-value=5.6e-09 Score=69.17 Aligned_cols=96 Identities=8% Similarity=0.104 Sum_probs=50.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9999998098999999999998530477302689987788776545-556799999887540112110135554434445
Q gi|254781174|r 63 KAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAG-KYQQAASLGEEYITQYPESKNVDYVYYLVGMSY 141 (271)
Q Consensus 63 ~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~-~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~ 141 (271)
.|..+.+.+.+++|+..+++++...|.. ..+....+.++..++ ++++|+..+++.+..+|++.. +++.+|.++
T Consensus 103 ~~a~~~~~e~~~~Al~~~~~ai~lnP~~---~~aw~~r~~~l~~l~~~~~~al~~~~~~l~~~pk~~~---~~~~~g~~~ 176 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELNAAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLV 176 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHH
T ss_conf 9999996765199999999999979735---9999999999998074899999999999987899889---999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5554431112345899999999999852001
Q gi|254781174|r 142 AQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 142 ~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
... +...+|+..+++.+...|+.
T Consensus 177 ~~l--------~~~~~Al~~~~~al~~~p~n 199 (382)
T 2h6f_A 177 EWL--------RDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHH--------TCCTTHHHHHHHHHHHCTTC
T ss_pred HHC--------CCHHHHHHHHHHHHHHCCCC
T ss_conf 982--------57999999999998638656
No 73
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.09 E-value=2.2e-09 Score=71.57 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999980989999999999985304773026899877887765455567999998875401121101355544344
Q gi|254781174|r 60 VYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGM 139 (271)
Q Consensus 60 lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~ 139 (271)
.=+.|..+++.|+|++|+..|++++...|.. +.+.+++|.+|+.+|+|++|+..+++.++..|+++.. +..+|.
T Consensus 7 ~k~~G~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~nla~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~a~ 80 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED---YRQIAK 80 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC---HHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHH
T ss_conf 9999999998689999999999998709998---9999857899988198999999799999869236176---789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 45555443111234589999999999985200
Q gi|254781174|r 140 SYAQMIRDVPYDQRATKLMLQYMSRIVERYTN 171 (271)
Q Consensus 140 ~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~ 171 (271)
++... ......++...+|+..++..+...|+
T Consensus 81 ~~~~l-g~~~~~~~~~~~A~~~~~~al~~~~~ 111 (131)
T 1elr_A 81 AYARI-GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHH-HHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 99999-99999819999999999999706999
No 74
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=1e-08 Score=67.64 Aligned_cols=166 Identities=10% Similarity=-0.061 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHH
Q ss_conf 68999999999998098999999999998530477302689987788776545556799999887540112110---135
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKN---VDY 132 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~---~~~ 132 (271)
.+...+..|......++++.|+..+++++...|.+. ..+.++.++...+++++|+..|++.+...|.+.. ...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF----LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH----HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 899999999998752308899998888752599689----9999999999874399999999999986730010131089
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55443444555544311123458999999999998520010134565555555666666655566666544322345689
Q gi|254781174|r 133 VYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPR 212 (271)
Q Consensus 133 A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~ 212 (271)
++...|.++ +..+...+|...|++.+...|++.- . ...+|..+...|++..|+..
T Consensus 288 ~~~~~~~~~--------~~~~~~~~a~~~~~~a~~~~p~~~~---~--------------~~~~~~~~~~~~~~~~A~~~ 342 (493)
T 2uy1_A 288 LRINHLNYV--------LKKRGLELFRKLFIELGNEGVGPHV---F--------------IYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHHHHHH--------HHHHCHHHHHHHHHHHTTSCCCHHH---H--------------HHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHH--------HHCCCHHHHHHHHHHHHHHCCCHHH---H--------------HHHHHHHHHHCCCHHHHHHH
T ss_conf 999999999--------9879989999999999774998899---9--------------99999998754489999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99886528998115999999999999749879999999999
Q gi|254781174|r 213 FQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLI 253 (271)
Q Consensus 213 ~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l 253 (271)
|+..+..+|+.+ +++..++..+..+|..++|+..++.+
T Consensus 343 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~ 380 (493)
T 2uy1_A 343 FSSGLLKHPDST---LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999987289859---99999999998869899999999988
No 75
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle, cell division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=99.05 E-value=5.2e-10 Score=75.21 Aligned_cols=141 Identities=10% Similarity=-0.034 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 899999999999809899999999999853047730------26899877887765455567999998875401121101
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGV------ARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV 130 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~------a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~ 130 (271)
...+.+.+......|.|+.|......+....|.++. ..++.+.+|.+++..++|.+|+..|++.+...|
T Consensus 20 ~~~~l~~~~~l~~~G~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~y~~A~~~~~~al~~~~----- 94 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK----- 94 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
T ss_conf 789999999999865765699999999876025976428989999999999999986679999999999999619-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35554434445555443111234589999999999985200101345655555556666666555666665443223456
Q gi|254781174|r 131 DYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAI 210 (271)
Q Consensus 131 ~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~ 210 (271)
|+++++ ++...+|+..|++.+...|+.. ++. +.+|..|.+.|++..|+
T Consensus 95 -------~~~~~~--------~~~~~~A~~~~~~al~~~p~~~---~~~--------------~~lg~~~~~~g~~~~Ai 142 (167)
T 3ffl_A 95 -------ALSKTS--------KVRPSTGNSASTPQSQCLPSEI---EVK--------------YKLAECYTVLKQDKDAI 142 (167)
T ss_dssp -------CC----------------------------CCCCHH---HHH--------------HHHHHHHHHTTCHHHHH
T ss_pred -------HHHHHH--------HHHHHHHHHHHHHHHHHCCCCH---HHH--------------HHHHHHHHHCCCHHHHH
T ss_conf -------999998--------7779999999999987493569---999--------------99999999839999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999886528998115999999999999
Q gi|254781174|r 211 PRFQLVLANYSDAEHAEEAMARLVEAYV 238 (271)
Q Consensus 211 ~~~~~~i~~yp~t~~~~eAl~~l~~~y~ 238 (271)
..|+.+... |.+ ++..+.||++|.
T Consensus 143 ~~le~i~~~-~~~---~~~~~~Lg~lY~ 166 (167)
T 3ffl_A 143 AILDGIPSR-QRT---PKINMLLANLYK 166 (167)
T ss_dssp HHHHTSCGG-GCC---HHHHHHHHHHCC
T ss_pred HHHHHHHHC-CCC---HHHHHHHHHHHC
T ss_conf 999999862-899---799999999868
No 76
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.8e-09 Score=70.16 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 26899877887765455567999998875401121101355544344455554431112345899999999999852001
Q gi|254781174|r 93 ARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 93 a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
..+.+...|..+|..++|++|+..|++.++..|..+.....++.+|.|++++ +...+|+..++..++.-|++
T Consensus 27 ~~~~l~~~Gn~~f~~~~y~~Ai~~y~kAl~l~~~~~~~~~~~~n~~~~~~~~--------~~~~~A~~~~~~ai~~~p~~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL--------EDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999968999999999999874548777999999999999985--------68889999899999878998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 0134565555555666666655566666544322345689998865289981159999999
Q gi|254781174|r 173 PYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARL 233 (271)
Q Consensus 173 ~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l 233 (271)
.. +. +.+|..|...++|..|+..|+.+++.-|+.+.+.+.|-++
T Consensus 99 ~~---~~--------------~~lg~~~~~~~~~~~A~~~~~kal~l~P~n~~~~~~L~~l 142 (148)
T 2dba_A 99 VK---AL--------------YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HH---HH--------------HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HH---HH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99---99--------------9999999987899999999999998588989999999876
No 77
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.02 E-value=3.4e-10 Score=76.30 Aligned_cols=107 Identities=9% Similarity=0.030 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899999999999809899999999999853047730--------------26899877887765455567999998875
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGV--------------ARKSLLMSAFVQYSAGKYQQAASLGEEYI 121 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~--------------a~~A~~~la~~~y~~~~y~~A~~~~~~fi 121 (271)
.+..+..+|..+|+.|+|.+|+..|++.+...|.... .....+++|.||+.+++|.+|+..+++.+
T Consensus 178 ~a~~~k~~GN~~fk~g~y~~Ai~~Y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~Ai~~~~kal 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999998599999999979999748632555655558999999999999999999998356666688999864
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 4011211013555443444555544311123458999999999998520010
Q gi|254781174|r 122 TQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSP 173 (271)
Q Consensus 122 ~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ 173 (271)
+..|++. .|+|.+|.++..+ +...+|+..|+..+...|+.+
T Consensus 258 ~~~p~~~---ka~~~~g~a~~~l--------g~~~~A~~~~~kAl~ldP~n~ 298 (338)
T 2if4_A 258 TEEEKNP---KALFRRGKAKAEL--------GQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHCTTCH---HHHHHHHHHHHTT--------TCHHHHHHHHHHTTC------
T ss_pred HCCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCH
T ss_conf 2287528---9999999999987--------899999999999998398999
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.00 E-value=1.7e-08 Score=66.39 Aligned_cols=160 Identities=14% Similarity=0.048 Sum_probs=69.8
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 80989999999999985304773026899877887765455567999998875401121101355544344455554431
Q gi|254781174|r 69 KEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDV 148 (271)
Q Consensus 69 ~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~ 148 (271)
..+++++|+..|+..+...|... ....+.++..+...|+++.|...+++.+...|.+.. .++...|..+..
T Consensus 298 ~~~~~~~a~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----- 368 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARR----- 368 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--HHHHHHHHHHHH-----
T ss_pred HHHCHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHH-----
T ss_conf 73033889999988885053001--789999999986302189999999987762661458--999999999998-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 112345899999999999852001013456555555566666665556666-6544322345689998865289981159
Q gi|254781174|r 149 PYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRY-YLKRGEYVAAIPRFQLVLANYSDAEHAE 227 (271)
Q Consensus 149 ~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~-Y~~~~~y~aA~~~~~~~i~~yp~t~~~~ 227 (271)
.+...+|+..|++.+...|+++.+- ...|.+ +...|++..|+..|+..++..|+++
T Consensus 369 ---~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~a~l~~~~~~~~~~A~~~~~~al~~~p~~~--- 425 (530)
T 2ooe_A 369 ---AEGIKSGRMIFKKAREDARTRHHVY-----------------VTAALMEYYCSKDKSVAFKIFELGLKKYGDIP--- 425 (530)
T ss_dssp ---HHHHHHHHHHHHHHHTCTTCCTHHH-----------------HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH---
T ss_pred ---CCCHHHHHHHHHHHHHHCCCCHHHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---
T ss_conf ---0668999999999998489979999-----------------99999998865479999999999986499969---
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999997498799999999997856999
Q gi|254781174|r 228 EAMARLVEAYVALALMDEAREVVSLIQERYPQG 260 (271)
Q Consensus 228 eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s 260 (271)
+.+...+..+..+|..++|+..++......|.+
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~e~al~~~~~~ 458 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999988889999999999998668998
No 79
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.98 E-value=5.4e-10 Score=75.11 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
+......|..+++.|++++|+..|.+ |. .+.+...+|.++...|++++|+..+++.+...|+ +.++..
T Consensus 32 ~~~~~~Lg~~~~~~g~~~eAi~~y~k-----~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~ 99 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIK-----AD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE----SYVETE 99 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHC-----CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC----HHHHHH
T ss_conf 89999999999878899999999878-----99---8899999999999879999999999998640874----699999
Q ss_pred HHHHHHHH
Q ss_conf 34445555
Q gi|254781174|r 137 VGMSYAQM 144 (271)
Q Consensus 137 ~a~~~~~~ 144 (271)
+|.++.++
T Consensus 100 l~~~~~~~ 107 (449)
T 1b89_A 100 LIFALAKT 107 (449)
T ss_dssp --------
T ss_pred HHHHHHHC
T ss_conf 99999986
No 80
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.96 E-value=9.3e-09 Score=67.89 Aligned_cols=113 Identities=18% Similarity=0.108 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77302689987788776545556799999887540112110135554434445555443111234589999999999985
Q gi|254781174|r 89 FAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVER 168 (271)
Q Consensus 89 ~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~ 168 (271)
-++-..++.+.+|..++..|+|++|+..|++.++..|++. .+++.+|.++..+ +...+|+..|++.+..
T Consensus 13 l~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~lg~~~~~~--------~~~~~A~~~~~~~l~~ 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---RYFLGLGACRQSL--------GLYEQALQSYSYGALM 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHH
T ss_conf 6985599999999999986999999999999998399879---9999973999994--------8989999999999874
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 2001013456555555566666665556666654432234568999886528998115999
Q gi|254781174|r 169 YTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEA 229 (271)
Q Consensus 169 yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eA 229 (271)
.|+++.+ . +.+|..|...|++..|+..|+.+++..|+.+.....
T Consensus 82 ~p~~~~~---~--------------~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 125 (142)
T 2xcb_A 82 DINEPRF---P--------------FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp CTTCTHH---H--------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred CCCCHHH---H--------------HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 4388999---9--------------976799988589999999999998739999789999
No 81
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A*
Probab=98.93 E-value=1.4e-08 Score=66.86 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=39.6
Q ss_pred HHHHHHHHCCH-HHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999980989-99999999998530477302-------68998778877654555679999988754011211013555
Q gi|254781174|r 63 KAVLFLKEQNF-SKAYEYFNQCSRDFPFAGVA-------RKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 63 ~a~~~~~~~~y-~~A~~~f~~i~~~~P~s~~a-------~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
........+++ .+|+..|++++...|...-+ -.++...+..+...+.+++|+..++..++.+|+++. ++
T Consensus 35 ~~~~~~~~~~~~~eAl~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~al~~~p~~~~---~~ 111 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---TW 111 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH---HH
T ss_conf 999998747573999999999998888878999999999997043335688887899999999999988899899---99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 44344455554431112345899999999999852001
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
+.+|+++.... .....+|+..++..+...|+.
T Consensus 112 ~~~~~~~~~~~------~~~~~~a~~~~~~al~~~~~~ 143 (331)
T 3dss_A 112 HHRCWLLSRLP------EPNWARELELCARFLEADERN 143 (331)
T ss_dssp HHHHHHHHHCS------SCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHC------CCCHHHHHHHHHHHHHHCCCC
T ss_conf 99758887607------735999999999997248345
No 82
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=1.4e-07 Score=61.06 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHH
Q ss_conf 689999999999980989999999999985304773--026899877887765455567999998875401121---101
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAG--VARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPES---KNV 130 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~--~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s---~~~ 130 (271)
....+.+.|..+.+.+++.+|++.+++....+.... ...-..+..+..++..+++++|+..|++.+..+... +..
T Consensus 75 ~a~~~~~~g~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~a~~~y~~A~~i~~~~~~~~~~ 154 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999987265899999899999998861890677788877889987145999999999999999875996479
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35554434445555443111234589999999999985200101345655555556666666555666665443223456
Q gi|254781174|r 131 DYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAI 210 (271)
Q Consensus 131 ~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~ 210 (271)
..++..+|.++.. ++...+|++.|++.+..+....-. ..++.-.+.+|..|+..|++..|.
T Consensus 155 ~~~~~~la~~~~~--------~~~y~eA~~~~~~a~~i~~~~~~~-----------~~~~~~~~~l~~~~l~~gd~~~A~ 215 (307)
T 2ifu_A 155 AELIGKASRLLVR--------QQKFDEAAASLQKEKSMYKEMENY-----------PTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999748899887--------168999999999999999986890-----------999999997999999868999999
Q ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 899988652--89981159999999999997498799999999997856999789999986
Q gi|254781174|r 211 PRFQLVLAN--YSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVETL 269 (271)
Q Consensus 211 ~~~~~~i~~--yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~ 269 (271)
..|+..+.. |.+|.. ..++..|.++| ..|+.+.+.+..+.=..++=|+...+-+..|
T Consensus 216 ~~~~~a~~~~~f~~s~e-~~~~~~Ll~a~-~~~D~e~~~~~~~~~~~~~ld~~~~~l~~~l 274 (307)
T 2ifu_A 216 KCVRESYSIPGFSGSED-CAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDNDYAKLAISL 274 (307)
T ss_dssp HHHHHHTTSTTSTTSHH-HHHHHHHHHHH-HTTCHHHHHHHTTSHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHCCCCCCCCHH-HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 99999855666799899-99999999999-8069999999986155541459999999867
No 83
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint center for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.93 E-value=2.1e-09 Score=71.63 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=76.3
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 09899999999999853047730268998778877654555679999988754011211013555443444555544311
Q gi|254781174|r 70 EQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVP 149 (271)
Q Consensus 70 ~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~ 149 (271)
-|++.+|++.|++.+...|.++.-..+.+.+|.+|..+|+|++|+..|++.++.+|+++ .+++.+|.+++.+
T Consensus 3 lG~~~eAi~~y~kAl~~~~~~~~~~~a~~~lg~~y~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~~~----- 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ---ALRVFYAMVLYNL----- 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH-----
T ss_conf 95999999999999835889964999999999999994999999999987785078989---9999899998561-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 1234589999999999985200101
Q gi|254781174|r 150 YDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 150 ~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
+...+|+..+...+...|+++.
T Consensus 75 ---g~~~eA~~~~~~~~~~~~~~~~ 96 (117)
T 3k9i_A 75 ---GRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp ---TCHHHHHHHHHHHHHHHCCCHH
T ss_pred ---CCHHHHHHHHHHHHHHCCCCHH
T ss_conf ---2599999999999873899889
No 84
>2e2e_A Formate-dependent nitrite reductase complex NRFG subunit; TPR, cytochrome C biogenesis, O157:H7 EDL933, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=4.5e-08 Score=63.87 Aligned_cols=103 Identities=8% Similarity=0.028 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 6899999999999809899999999999853047730268998778877654555---6799999887540112110135
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKY---QQAASLGEEYITQYPESKNVDY 132 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y---~~A~~~~~~fi~~~P~s~~~~~ 132 (271)
.++.++..|..++..|+++.|++.|++++...|..+ ++.+.+|.+++..+++ ++|+..+++.+...|+++.
T Consensus 43 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~a~~l~~~~~~~~~~ea~~~~~~al~~~p~~~~--- 116 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT--- 116 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHH---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHH---
T ss_conf 999999999999996999999999999998586327---99987899999863876312468999899871999899---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5544344455554431112345899999999999852001
Q gi|254781174|r 133 VYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 133 A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
+.+.+|.+++.. +...+|+..|+.+++.-|+.
T Consensus 117 ~~~~lg~~~~~~--------g~~~~A~~~~~~~l~~~p~~ 148 (177)
T 2e2e_A 117 ALMLLASDAFMQ--------ANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHT--------TCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHC--------CCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999997--------89999999999998659996
No 85
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=1.7e-08 Score=66.31 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 89987788776545556799999887540112110135554434445555443111234589999999999985200101
Q gi|254781174|r 95 KSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 95 ~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
..+...|..++..|+|++|+..|++.++..|+++ .+++.+|.|+..+ +...+|+..|...+...|++..
T Consensus 5 ~~L~~~G~~~~~~g~y~~A~~~~~~ai~~~p~~~---~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~ 73 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---VLYSNRSAAYAKK--------GDYQKAYEDGCKTVDLKPDWGK 73 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHCCCCHH
T ss_conf 9999999999996999999999999998689989---9999999999984--------8832000689999986989799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 345655555556666666555666665443223456899988652899811599999
Q gi|254781174|r 175 VKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMA 231 (271)
Q Consensus 175 a~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~ 231 (271)
+. +..|..|...|+|..|+..++.+++..|+.+.....+-
T Consensus 74 ---~~--------------~~lg~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 113 (118)
T 1elw_A 74 ---GY--------------SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp ---HH--------------HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred ---HH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---99--------------99999999949999999999999971989899999999
No 86
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.92 E-value=6.4e-09 Score=68.81 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 68998778877654555679999988754011211013555443444555544311123458999999999998520010
Q gi|254781174|r 94 RKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSP 173 (271)
Q Consensus 94 ~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ 173 (271)
....+..|..++..|++++|+..|++.+...|++. .+++.+|.++..+ +...+|+..|+..+...|+++
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~~i~~~P~~~---~a~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~ 85 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---EAWRSLGLTQAEN--------EKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCCH
T ss_conf 59999999999996999999999999998699879---9999999999984--------880244688899999798989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 1345655555556666666555666665443223456899988652899811
Q gi|254781174|r 174 YVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEH 225 (271)
Q Consensus 174 ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~ 225 (271)
.+ . +.+|..|...|++..|+..|+.+++..|+.+.
T Consensus 86 ~~---~--------------~~la~~~~~~g~~~~A~~~~~~~l~~~P~~~~ 120 (121)
T 1hxi_A 86 AV---H--------------AALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HH---H--------------HHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HH---H--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99---9--------------99999999959999999999999986849878
No 87
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.90 E-value=4.4e-09 Score=69.77 Aligned_cols=80 Identities=13% Similarity=0.031 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..+...+..|..+++.|+|++|++.|++++...|.. .+|.+.+|.+++.++++++|+..|++.++..|+++.+ .
T Consensus 38 ~~~~~~~~la~~~~~l~~~~~Ai~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a---~ 111 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA---K 111 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTH---H
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---H
T ss_conf 989999999999998399999999999999849998---9999999999998599999999999989868897999---9
Q ss_pred HHHHHH
Q ss_conf 443444
Q gi|254781174|r 135 YLVGMS 140 (271)
Q Consensus 135 y~~a~~ 140 (271)
..++.+
T Consensus 112 ~~l~~~ 117 (477)
T 1wao_1 112 MKYQEC 117 (477)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 88
>2hr2_A Hypothetical protein; NP_663012.1, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 2.54A {Chlorobium tepidum tls} SCOP: a.118.8.8
Probab=98.88 E-value=5.6e-08 Score=63.33 Aligned_cols=106 Identities=8% Similarity=-0.033 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999999999809899999999999853047730---------2689987788776545556799999887540112110
Q gi|254781174|r 59 EVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGV---------ARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKN 129 (271)
Q Consensus 59 ~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~---------a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~ 129 (271)
....+|..++..|+|++|+..|++.+...|..+- ...+..++|.++..+|+|++|+..+++.+...|....
T Consensus 13 ~~~~~g~~~~~~g~y~eA~~~y~kAl~~~~~~~~~~~~~~~~~~a~~~~n~g~~~~~lg~~~~A~~~~~~al~~~~~~~~ 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998599999999999999982341067775023778999999999999808699999999999986553135
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1--------355544344455554431112345899999999999852001
Q gi|254781174|r 130 V--------DYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 130 ~--------~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
. ..+++.+|.++.. ++...+|+..|+..+..+|..
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~Al~i~~~~ 135 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDG--------LGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHH
T ss_conf 4221666689888769999986--------588488999999999865740
No 89
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=1.1e-07 Score=61.72 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 68998778877654555679999988754011211013555443444555544311123458999999999998520010
Q gi|254781174|r 94 RKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSP 173 (271)
Q Consensus 94 ~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ 173 (271)
.+.+...|..+|+.++|++|+..|++.|+..|++. .+++.+|.+++.+ +...+|+..|+..++.-|+..
T Consensus 13 A~~l~~~Gn~~~~~~~y~~Ai~~y~kal~~~p~~~---~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~ 81 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---IYYGNRSLAYLRT--------ECYGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999995899999999999998399888---9999788999985--------651357999999998375578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHCCCHHHHH
Q ss_conf 1345655555556666666555666665443223456899988652899811599999999999--9749879999
Q gi|254781174|r 174 YVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAY--VALALMDEAR 247 (271)
Q Consensus 174 ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y--~~lg~~d~A~ 247 (271)
. +. +.+|..|.+.|++..|+..|+..+.-.|+.+. +...++.+. ...+..+++.
T Consensus 82 ~---a~--------------~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---~~~~~~~~~~~~~~~~~~~a~ 137 (166)
T 1a17_A 82 K---GY--------------YRRAASNMALGKFRAALRDYETVVKVKPHDKD---AKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp H---HH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9---99--------------99999999959999999999999872969899---999999999999989999997
No 90
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=1e-08 Score=67.68 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
|+..|.+|..+++.|+|++|+..|++++...|..+ .+...+|.+++.+++|++|+..|++.++..|++.. +.+++.
T Consensus 6 ~~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~g~~~~~~~~~~~A~~~~~~Al~l~~~~~~-~~a~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---KYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHH
T ss_conf 99999999999996999999999999987195559---99998889999851089999999999854999556-999999
Q ss_pred HHHHHHHH
Q ss_conf 34445555
Q gi|254781174|r 137 VGMSYAQM 144 (271)
Q Consensus 137 ~a~~~~~~ 144 (271)
+|.++...
T Consensus 82 ~g~~l~~l 89 (112)
T 2kck_A 82 KADALRYI 89 (112)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
T ss_conf 99999998
No 91
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.81 E-value=2.7e-08 Score=65.20 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36899999999999809899999999999853047730268998778877654555679999988754011211013555
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVY 134 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~ 134 (271)
..++..+..|..+++.|++++|+..|+.++...|.+ ..+.+.+|.++..++++++|+..|++.++..|+++. ++
T Consensus 7 n~a~ay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~P~~~~---~~ 80 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AK 80 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HH
T ss_conf 889999999999999689999999998838607504---677623999999968999999999998475879799---99
Q ss_pred HHHHHHHHHH
Q ss_conf 4434445555
Q gi|254781174|r 135 YLVGMSYAQM 144 (271)
Q Consensus 135 y~~a~~~~~~ 144 (271)
+.+|.++.++
T Consensus 81 ~~la~~~~~~ 90 (91)
T 1na3_A 81 QNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 9999999976
No 92
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=3.7e-07 Score=58.54 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98778877654555679999988754011211013------------555443444555544311123458999999999
Q gi|254781174|r 97 LLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD------------YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSR 164 (271)
Q Consensus 97 ~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~------------~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~ 164 (271)
.-..|..+|+.++|++|+..|++.+...|...... .++..+|.||++ ++...+|+..++.
T Consensus 150 ~ke~Gn~~f~~g~y~~Ai~~Y~kAl~~~~~~~~~~~~~~~~~~~l~~~~~~Nla~~y~k--------~~~~~~A~~~~~~ 221 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK--------LQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHH
T ss_conf 99999999985999999999999998574443123466765537899999889999999--------3888999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99852001013456555555566666665556666654432234568999886528998115999999999999749879
Q gi|254781174|r 165 IVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMD 244 (271)
Q Consensus 165 ~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d 244 (271)
.+..-|++. .+. +..|..|+..++|..|+..|+.++...|+.+ ++...+..+..++....
T Consensus 222 al~~~p~n~---~a~--------------~~~g~~~~~~~~~~~A~~~~~~al~l~P~n~---~~~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 222 ALELDSNNE---KGL--------------SRRGEAHLAVNDFELARADFQKVLQLYPNNK---AAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHCTTCH---HHH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCH---HHH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHH
T ss_conf 876341237---999--------------9999999986899999999999998499999---99999999999999999
No 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A
Probab=98.79 E-value=2.1e-07 Score=60.04 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899877887765455567999998875401121101------------35554434445555443111234589999999
Q gi|254781174|r 95 KSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV------------DYVYYLVGMSYAQMIRDVPYDQRATKLMLQYM 162 (271)
Q Consensus 95 ~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~------------~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f 162 (271)
...-..|..+|+.++|+.|+..|++.++..+..... ..++..+|.||++ ++...+|+..+
T Consensus 269 ~~~k~~Gn~~fk~g~y~~A~~~Y~kAl~~l~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~k--------l~~~~~A~~~~ 340 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK--------LREYTKAVECC 340 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH--------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHH
T ss_conf 9887667899976899999999999999987642676555521337899999999999998--------58999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9999852001013456555555566666665556666654432234568999886528998115999999999999749
Q gi|254781174|r 163 SRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALA 241 (271)
Q Consensus 163 ~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg 241 (271)
+..++.-|++. .|. +..|..|+..++|..|+..|+.+++..|+.+.+ ...+..+..++.
T Consensus 341 ~~al~~dp~n~---ka~--------------~~~g~~~~~~~~~e~A~~~~~kal~l~P~n~~~---~~~l~~l~~~~~ 399 (457)
T 1kt0_A 341 DKALGLDSANE---KGL--------------YRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA---RLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHSTTCH---HHH--------------HHHHHHHHHTTCHHHHHHHHHHHHTTC----CH---HHHHHHHHHHHH
T ss_pred HHHHHHCCCCH---HHH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH
T ss_conf 99998788776---999--------------999999998689999999999999858998999---999999999999
No 94
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle, cell division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.77 E-value=3.3e-08 Score=64.66 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999809899999999999853047730268998778877654555679999988754011211013555443
Q gi|254781174|r 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLV 137 (271)
Q Consensus 58 ~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~ 137 (271)
+.++..|..+++.|+|.+|++.|++++.. ..+.+++.+++|++|+..+++.++..|++. .+++.+
T Consensus 64 ~~~~~lg~~~~~~~~y~~A~~~~~~al~~------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l 128 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQ------------KKALSKTSKVRPSTGNSASTPQSQCLPSEI---EVKYKL 128 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHCC--------------------CCCCHH---HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHH
T ss_conf 99999999999866799999999999996------------199999987779999999999987493569---999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 444555544311123458999999999
Q gi|254781174|r 138 GMSYAQMIRDVPYDQRATKLMLQYMSR 164 (271)
Q Consensus 138 a~~~~~~~~~~~~d~~~~~~A~~~f~~ 164 (271)
|.|+..+ +...+|+..|+.
T Consensus 129 g~~~~~~--------g~~~~Ai~~le~ 147 (167)
T 3ffl_A 129 AECYTVL--------KQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHT--------TCHHHHHHHHHT
T ss_pred HHHHHHC--------CCHHHHHHHHHH
T ss_conf 9999983--------999999999999
No 95
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.77 E-value=5.2e-07 Score=57.68 Aligned_cols=138 Identities=9% Similarity=0.068 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CC
Q ss_conf 8999999999998098999999999998530-----4773026899877887765455567999998875401-----12
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDF-----PFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQY-----PE 126 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~-----P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~-----P~ 126 (271)
.....+.+......|+|.+|+..+++..... |.++......-.+|.++..+|+|++|+..+++.++.+ |+
T Consensus 309 ~~~~~e~~~~~~~~~~~~ea~~l~~~~L~~~~~il~~~h~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 66667878766633677888999999999987506996277899999999999987798899999999999999976999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1101355544344455554431112345899999999999852-----00101345655555556666666555666665
Q gi|254781174|r 127 SKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERY-----TNSPYVKGARFYVTVGRNQLAAKEVEIGRYYL 201 (271)
Q Consensus 127 s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~y-----P~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~ 201 (271)
||.+..+++.+|.++..+ +...+|+..+++.++-. |++|.+.+... .+|..|.
T Consensus 389 h~~~a~~~~~lg~~~~~~--------~~~~~A~~~~~kAl~i~~~~~G~~hp~~~~l~~--------------~l~~~~~ 446 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHA--------GHIEVGHGMICKAYAILLVTHGPSHPITKDLEA--------------MRMQTEM 446 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH--------------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--------------HHHHHHH
T ss_conf 989999999999999987--------898999999999999999974999842999999--------------9999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 443223456899988
Q gi|254781174|r 202 KRGEYVAAIPRFQLV 216 (271)
Q Consensus 202 ~~~~y~aA~~~~~~~ 216 (271)
+.++|..|...|+.+
T Consensus 447 ~l~~~~~a~~~~~~~ 461 (490)
T 3n71_A 447 ELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 986578889999999
No 96
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, glycoprotein, metal-binding, oxidoreductase, iron, vitamin C, TPR repeat, dioxygenase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.77 E-value=4.9e-08 Score=63.66 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 36899999999999809899999999999853047730----26899877887765455567999998875401121101
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGV----ARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV 130 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~----a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~ 130 (271)
.+++..|+.|..+++.|+|..|+..|++.+...|..+. ...++..+|.+++.+|+|++|+..+++.++..|+++.
T Consensus 3 lsa~dc~~lG~~~~~~~~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~- 81 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR- 81 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH-
T ss_conf 2699999999999996899999999999987543567565529999999999999859837999999999975969899-
Q ss_pred HHHHHHHHHHH
Q ss_conf 35554434445
Q gi|254781174|r 131 DYVYYLVGMSY 141 (271)
Q Consensus 131 ~~A~y~~a~~~ 141 (271)
+++.++...
T Consensus 82 --a~~nl~~~~ 90 (104)
T 2v5f_A 82 --ANGNLKYFE 90 (104)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
T ss_conf --999999999
No 97
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.76 E-value=2.3e-07 Score=59.76 Aligned_cols=106 Identities=15% Similarity=0.064 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99877887765455567999998875401121101355544344455554431112345899999999999852001013
Q gi|254781174|r 96 SLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYV 175 (271)
Q Consensus 96 A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya 175 (271)
..-.+|..+|..|+|++|+..|++.++.+|+++ .+++.+|.|++.+ +...+|+..++..+..-|+..-+
T Consensus 6 ~~k~~G~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~nla~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~ 74 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---TYITNQAAVYFEK--------GDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 999999999986899999999999987099989---9998578999881--------98999999799999869236176
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 45655555556666666555666665443223456899988652899
Q gi|254781174|r 176 KGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSD 222 (271)
Q Consensus 176 ~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~ 222 (271)
.. .++.--..+|..+...++|..|+..|+..+...|+
T Consensus 75 ---~~-------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 111 (131)
T 1elr_A 75 ---YR-------QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp ---HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ---HH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf ---78-------99999999999999819999999999999706999
No 98
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=5.9e-07 Score=57.39 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999999999809899999999999853047730268998778877654555679999988754011211
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESK 128 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~ 128 (271)
...++..|..+...|+|++|+..|++++...|.+. .+...+|.++...|++.+|+..|.+-+..-|.++
T Consensus 152 ~~~~~~LG~l~r~~~~~~~A~~~y~~A~~l~P~~~---~~~~~lg~l~~~~~~~~~A~~~y~ral~~~~~~~ 220 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG---QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999985799999999999998788989---9999999999987999999999999981799988
No 99
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.49A {Deinococcus radiodurans R1}
Probab=98.73 E-value=9e-07 Score=56.30 Aligned_cols=151 Identities=10% Similarity=0.019 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7368999999999998098999999999998530477---3026899877887765455567999998875401121101
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFA---GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV 130 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s---~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~ 130 (271)
...+...+..|..+...|+|++|+..|++.....+.. +....+...+|.++...+++++|+..+++.+...+.....
T Consensus 23 ~~~~~a~~~LG~~~~~~g~~~eA~~~~~~a~~~~~~~~~~~~~a~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 102 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75599999999999987999999999999999898858986899999999999998076777688877888763654211
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3----555443444555544311123458999999999998520010134565555555666666655566666544322
Q gi|254781174|r 131 D----YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEY 206 (271)
Q Consensus 131 ~----~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y 206 (271)
+ ...+..|..+.. .+...+|...++..+....... .....+.-...+|..|.++|++
T Consensus 103 ~~~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~~l~~~~~~~-----------~~~~~a~~~~~Lg~~~~~~g~~ 163 (203)
T 3gw4_A 103 PLAASANAYEVATVALH--------FGDLAGARQEYEKSLVYAQQAD-----------DQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHHH--------HTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHHHHCCCH
T ss_conf 26889988757899886--------1104887799999999998748-----------9757999999999999997899
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 34568999886528998
Q gi|254781174|r 207 VAAIPRFQLVLANYSDA 223 (271)
Q Consensus 207 ~aA~~~~~~~i~~yp~t 223 (271)
..|+..|+..++-+++.
T Consensus 164 ~~A~~~~~~Al~l~~~~ 180 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999987
No 100
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.72 E-value=5.9e-07 Score=57.36 Aligned_cols=121 Identities=15% Similarity=0.092 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99877887765455567999998875401121101355544344455554431112345899999999999852001013
Q gi|254781174|r 96 SLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYV 175 (271)
Q Consensus 96 A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya 175 (271)
..-.+|..+|+.++|++|+..|++.++..+.+..... + ......
T Consensus 225 ~lK~~Gn~~fk~g~y~~Ai~~Y~kAL~~l~~~~~~~~------------------~-----------~~~~~~------- 268 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE------------------D-----------ADGAKL------- 268 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC------------------H-----------HHHGGG-------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHCCHHHC------------------C-----------HHHHHH-------
T ss_conf 9999999999859999999999999951300210000------------------0-----------555541-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 45655555556666666555666665443223456899988652899811599999999999974987999999999978
Q gi|254781174|r 176 KGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQE 255 (271)
Q Consensus 176 ~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~ 255 (271)
......-...+|..|++.++|..|+..++.+++.-|+. .+|++++|.+|..+|+.++|.+.++....
T Consensus 269 ----------~~~~~~~~~Nla~~~~kl~~y~~Ai~~~~kaL~ldp~~---~ka~~~~g~a~~~lg~~e~A~~~~~kal~ 335 (370)
T 1ihg_A 269 ----------QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---TKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ----------91169999999999998488899999999999849998---99999999999986999999999999998
Q ss_pred HCCCCHHHHH
Q ss_conf 5699978999
Q gi|254781174|r 256 RYPQGYWARY 265 (271)
Q Consensus 256 ~yP~s~~~~~ 265 (271)
-.|++.....
T Consensus 336 l~P~n~~~~~ 345 (370)
T 1ihg_A 336 IAPEDKAIQA 345 (370)
T ss_dssp HCTTCHHHHH
T ss_pred HCCCCHHHHH
T ss_conf 4999899999
No 101
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=6.5e-07 Score=57.11 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 77887765455567999998875401121101355544344455554431112345899999999999852001013456
Q gi|254781174|r 99 MSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGA 178 (271)
Q Consensus 99 ~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A 178 (271)
.-|..+|..|+|++|+..|++.|...|.....+.... ......+
T Consensus 43 e~Gn~~fk~g~y~~Ai~~Y~kAL~~~~~~~~~~~~~~-----------------------~~~~~~~------------- 86 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL-----------------------LDKKKNI------------- 86 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH-----------------------HHHHHHH-------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH-----------------------HHHHCCH-------------
T ss_conf 9999999869999999999999853834310104577-----------------------8762315-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 55555556666666555666665443223456899988652899811599999999999974987999999999978569
Q gi|254781174|r 179 RFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYP 258 (271)
Q Consensus 179 ~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP 258 (271)
...-...+|..|.+.++|..|+..++.+|+..|+.. .|++++|.+|..+|..++|...+.....--|
T Consensus 87 ----------~~~~~~Nla~~y~~~~~~~~Ai~~~~~aL~l~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~kal~l~P 153 (198)
T 2fbn_A 87 ----------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---KALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp ----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf ----------899999999999986899999999999998698869---9999999999997799999999999997298
Q ss_pred CCHHH
Q ss_conf 99789
Q gi|254781174|r 259 QGYWA 263 (271)
Q Consensus 259 ~s~~~ 263 (271)
++...
T Consensus 154 ~n~~~ 158 (198)
T 2fbn_A 154 NNLDI 158 (198)
T ss_dssp TCHHH
T ss_pred CCHHH
T ss_conf 99999
No 102
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=3.6e-08 Score=64.45 Aligned_cols=72 Identities=14% Similarity=0.009 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 368999999999998098999999999998530477302689987788776545556799999887540112110
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKN 129 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~ 129 (271)
..+...++.|..+++.|+|.+|+..|++++...|.. .+|.+.+|.++..+|+|++|+..|++.++..|++..
T Consensus 36 ~~~~~~~n~a~~y~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~~~~~~A~~~~~kal~l~p~~~~ 107 (281)
T 2c2l_A 36 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 989999999999998599899999999999719857---899999999999877657888999999874942134
No 103
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.66 E-value=1.4e-07 Score=61.10 Aligned_cols=137 Identities=11% Similarity=0.019 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8998778877654555679999988754011211013--------------55544344455554431112345899999
Q gi|254781174|r 95 KSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD--------------YVYYLVGMSYAQMIRDVPYDQRATKLMLQ 160 (271)
Q Consensus 95 ~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~--------------~A~y~~a~~~~~~~~~~~~d~~~~~~A~~ 160 (271)
......|..+|+.|+|.+|+..|++.++..|...... -++..+|.|+.+ ++...+|+.
T Consensus 180 ~~~k~~GN~~fk~g~y~~Ai~~Y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~--------~~~~~~Ai~ 251 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK--------LKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT--------TTCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHH
T ss_conf 999999999998599999999979999748632555655558999999999999999999998--------356666688
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99999985200101345655555556666666555666665443223456899988652899811599999999999974
Q gi|254781174|r 161 YMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVAL 240 (271)
Q Consensus 161 ~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~l 240 (271)
.+...+...|++.. |. +..|..|...++|..|+..|+.+++..|+.+ +++..|+.++.+.
T Consensus 252 ~~~kal~~~p~~~k---a~--------------~~~g~a~~~lg~~~~A~~~~~kAl~ldP~n~---~~~~~L~~l~~~~ 311 (338)
T 2if4_A 252 HCNIVLTEEEKNPK---AL--------------FRRGKAKAELGQMDSARDDFRKAQKYAPDDK---AIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHCTTCHH---HH--------------HHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHCCCCCHH---HH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH
T ss_conf 99986422875289---99--------------9999999987899999999999998398999---9999999999999
Q ss_pred CCHHHH-HHHHHHHHHHCCC
Q ss_conf 987999-9999999785699
Q gi|254781174|r 241 ALMDEA-REVVSLIQERYPQ 259 (271)
Q Consensus 241 g~~d~A-~~~~~~l~~~yP~ 259 (271)
+...++ ++.++.+....++
T Consensus 312 ~~~~~~ek~~y~kmf~~~~~ 331 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 86999999999987555877
No 104
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint center for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.64 E-value=1.4e-07 Score=61.10 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999809899999999999853047730268998778877654555679999988754011211013555443
Q gi|254781174|r 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLV 137 (271)
Q Consensus 58 ~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~ 137 (271)
..+++.|..+...|+|++|+..|++++..+|.+ +.+.+.+|.+++.+|++++|+..+++.+...|+++.+ ..|..
T Consensus 28 ~a~~~lg~~y~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~~~~~~~~~~~i--~~y~~ 102 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI--QSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH--HHTHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH--HHHHH
T ss_conf 999999999999499999999998778507898---9999989999856125999999999998738998899--99999
Q ss_pred HHHHHH
Q ss_conf 444555
Q gi|254781174|r 138 GMSYAQ 143 (271)
Q Consensus 138 a~~~~~ 143 (271)
|+.+++
T Consensus 103 ai~~y~ 108 (117)
T 3k9i_A 103 AILFYA 108 (117)
T ss_dssp HHHHHT
T ss_pred HHHHHH
T ss_conf 999868
No 105
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.61 E-value=6.1e-07 Score=57.30 Aligned_cols=99 Identities=8% Similarity=0.114 Sum_probs=46.9
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999809899999999999853047730268998778877654---55567999998875401121101355544344
Q gi|254781174|r 63 KAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSA---GKYQQAASLGEEYITQYPESKNVDYVYYLVGM 139 (271)
Q Consensus 63 ~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~---~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~ 139 (271)
.+..++..+++..|.+.|++.+...|.+ +++++.+|.++... +++.+|+..+++.+...++ |.-..+++.+|.
T Consensus 7 l~~~~~~~~dl~kAe~~y~~al~~~p~~---~~~~~n~a~~L~~~~~~~d~~~Ai~~l~~~l~~~~~-p~~~~~~~~La~ 82 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-EEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-HHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
T ss_conf 9987528899999999999997419999---999999999999859877899999999998750479-977999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 4555544311123458999999999998520010
Q gi|254781174|r 140 SYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSP 173 (271)
Q Consensus 140 ~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ 173 (271)
+|++. +...+|+..|+++++.-|+++
T Consensus 83 ~y~~~--------g~~~~A~~~~~~~L~~~P~~~ 108 (126)
T 1nzn_A 83 GNYRL--------KEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHT--------TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHC--------CCHHHHHHHHHHHHHHCCCCH
T ss_conf 99983--------995999999999998791969
No 106
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.61 E-value=6.8e-07 Score=57.00 Aligned_cols=114 Identities=8% Similarity=-0.069 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHH
Q ss_conf 77887765455567999998875401121101355544344455554431112345899999999999852--0010134
Q gi|254781174|r 99 MSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERY--TNSPYVK 176 (271)
Q Consensus 99 ~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~y--P~S~ya~ 176 (271)
.++..+...++++.|...|++.+...|+++. ++|..|.|+... ++.+...+|+..+++.+..- |++.
T Consensus 6 ~l~~~~~~~~dl~kAe~~y~~al~~~p~~~~---~~~n~a~~L~~~-----~~~~d~~~Ai~~l~~~l~~~~~p~~~--- 74 (126)
T 1nzn_A 6 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKS---TQFEYAWCLVRT-----RYNDDIRKGIVLLEELLPKGSKEEQR--- 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH---HHHHHHHHHTTS-----SSHHHHHHHHHHHHHHTTTSCHHHHH---
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHCCCCCCHH---
T ss_conf 9998752889999999999999741999999---999999999985-----98778999999999987504799779---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 5655555556666666555666665443223456899988652899811599999999999974
Q gi|254781174|r 177 GARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVAL 240 (271)
Q Consensus 177 ~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~l 240 (271)
++. +.+|..|++.|+|..|+..|+.+++.-|+.+ +|+..++.++.++
T Consensus 75 ~~~--------------~~La~~y~~~g~~~~A~~~~~~~L~~~P~~~---~A~~l~~~I~~~~ 121 (126)
T 1nzn_A 75 DYV--------------FYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---QAKELERLIDKAM 121 (126)
T ss_dssp HHH--------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH
T ss_pred HHH--------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH
T ss_conf 999--------------9999999983995999999999998791969---9999999999998
No 107
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.58 E-value=2.1e-07 Score=60.04 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=61.2
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9999999980989999999999985304773026899877887765455567999998875401121101
Q gi|254781174|r 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV 130 (271)
Q Consensus 61 Y~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~ 130 (271)
.+.|..+++.|+|++|++.|++++...|.+ .+.+.+.+|.+++.+|++++|+..|++.++..|+++.+
T Consensus 4 l~~~~~L~~qG~~~~Ai~~~~~al~~~P~~--~~~a~~~lG~~~~~~g~~~~Ai~~~~kal~i~P~~~~~ 71 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 899999999689999999999998728988--99999985703102487999999999999849899999
No 108
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.57 E-value=1.5e-06 Score=54.98 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 899999999999853047730268998778877654555----------6799999887540112110135554434445
Q gi|254781174|r 72 NFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKY----------QQAASLGEEYITQYPESKNVDYVYYLVGMSY 141 (271)
Q Consensus 72 ~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y----------~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~ 141 (271)
.|++|++.|++.+...|.. +++...+|.++..++++ ++|+..|++.|+..|+.+ .|++.+|.++
T Consensus 17 ~feeA~~~~e~a~~~~P~~---~~a~~n~G~al~~l~~~~~~~ea~~~~~eAi~~~~kAl~l~P~~~---~a~~nlG~a~ 90 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---EAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHH
T ss_conf 8999999999999759877---999999999999977730248788679999999999985698989---9999999999
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 55544---3111234589999999999985200101
Q gi|254781174|r 142 AQMIR---DVPYDQRATKLMLQYMSRIVERYTNSPY 174 (271)
Q Consensus 142 ~~~~~---~~~~d~~~~~~A~~~f~~~i~~yP~S~y 174 (271)
..+.. +.....+...+|++.|+..+..-|+.+.
T Consensus 91 ~~~g~l~~~~~~a~~~~e~A~~~f~kAl~~~P~n~~ 126 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 986501210999986499999999999974999899
No 109
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.57 E-value=6.5e-07 Score=57.11 Aligned_cols=84 Identities=6% Similarity=-0.132 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985304773026899877887765455567999998875401121101355544344455554431112345
Q gi|254781174|r 75 KAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRA 154 (271)
Q Consensus 75 ~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~ 154 (271)
.|++.|++++...|+++ .+.+.+|.+|+..++|++|+..|++.++..|+++ .+++.+|.++..+ +.
T Consensus 3 ~~~e~le~~l~~~pd~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~--------g~ 68 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM---LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS---VAWKWLGKTLQGQ--------GD 68 (115)
T ss_dssp CHHHHHHHHHTTTCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHH--------TC
T ss_pred HHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC--------CC
T ss_conf 99999999987299989---9999999999985999999999999788743059---9999999999997--------89
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 899999999999852001
Q gi|254781174|r 155 TKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 155 ~~~A~~~f~~~i~~yP~S 172 (271)
..+|+..|+..+...|+.
T Consensus 69 ~~~A~~~~~~al~l~~~~ 86 (115)
T 2kat_A 69 RAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999648517
No 110
>2hr2_A Hypothetical protein; NP_663012.1, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 2.54A {Chlorobium tepidum tls} SCOP: a.118.8.8
Probab=98.55 E-value=8.9e-07 Score=56.33 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8778877654555679999988754011211013---------5554434445555443111234589999999999985
Q gi|254781174|r 98 LMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD---------YVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVER 168 (271)
Q Consensus 98 ~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~---------~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~ 168 (271)
+..|..++..|+|++|+..|++.++..|+.+... .++..+|.++.+ ++...+|+..++..+..
T Consensus 15 ~~~g~~~~~~g~y~eA~~~y~kAl~~~~~~~~~~~~~~~~~~a~~~~n~g~~~~~--------lg~~~~A~~~~~~al~~ 86 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG--------LRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHH
T ss_conf 9999999985999999999999999823410677750237789999999999998--------08699999999999986
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 20010134565555555666666655566666544322345689998865289981
Q gi|254781174|r 169 YTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAE 224 (271)
Q Consensus 169 yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~ 224 (271)
.|.......... .....--+.+|..|...|+|..|+..|+..++-+|+..
T Consensus 87 ~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~A~~~~~~Al~i~~~~~ 136 (159)
T 2hr2_A 87 FNRRGELNQDEG------KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHCCTTSTHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 553135422166------66898887699999865884889999999998657404
No 111
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.51 E-value=7e-07 Score=56.93 Aligned_cols=75 Identities=17% Similarity=0.030 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 673689999999999980989999999999985304773026899877887765455567999998875401121101
Q gi|254781174|r 53 DVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV 130 (271)
Q Consensus 53 ~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~ 130 (271)
++..+...|..|..++..|++++|+..|++++...|.. ..+.+.+|.++..+|++++|+..|++.++..|+....
T Consensus 3 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ai~~~p~~---~~a~~~lg~~~~~~g~~~eA~~~y~~al~l~~~~~~~ 77 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 98969999999999999599999999999877449646---9999999999999689999999999998648754249
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=1e-05 Score=50.16 Aligned_cols=67 Identities=4% Similarity=-0.121 Sum_probs=46.9
Q ss_pred HHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999999999--998098999999999998530477302689987788776545556799999887540112
Q gi|254781174|r 57 QREVYEKAVL--FLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPE 126 (271)
Q Consensus 57 ~~~lY~~a~~--~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~ 126 (271)
.......|.. .+.++++.+|+..+++++...|.+. .+...+|.++..+|++++|+..+++.+..+|.
T Consensus 67 ~~a~~~~~~~~~~l~~~~~~~Al~~~~~~l~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 135 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---QIWNYRQLIIGQIMELNNNDFDPYREFDILEA 135 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998566679999999999998798767---99999999999840268889989999986277
No 113
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=1e-06 Score=56.03 Aligned_cols=92 Identities=9% Similarity=0.133 Sum_probs=43.5
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0989999999999985304773026899877887765---4555679999988754011211013555443444555544
Q gi|254781174|r 70 EQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYS---AGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIR 146 (271)
Q Consensus 70 ~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~---~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~ 146 (271)
.++|.+|.+.|++.+...|.+ +++++.+|.++.. .+++++|+..+++.+...++ |...+++|.+|.+|++.
T Consensus 11 ~edl~kAek~Y~~al~~~~~~---~~~~~n~a~~L~~s~~~~~~~~Ai~ll~~~l~~~~~-~~~~~~l~~La~~y~~~-- 84 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK-EEQRDYVFYLAVGNYRL-- 84 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHC--
T ss_conf 999999999999987109999---999999999998758777899999999998744699-41999999999999986--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 311123458999999999998520010
Q gi|254781174|r 147 DVPYDQRATKLMLQYMSRIVERYTNSP 173 (271)
Q Consensus 147 ~~~~d~~~~~~A~~~f~~~i~~yP~S~ 173 (271)
+...+|+..|++.++.-|+.+
T Consensus 85 ------g~~~~A~~~~~~aL~idP~n~ 105 (152)
T 1pc2_A 85 ------KEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp ------SCHHHHHHHHHHHHHHCTTCH
T ss_pred ------CCHHHHHHHHHHHHHHCCCCH
T ss_conf ------999999999999997693989
No 114
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.43 E-value=2.2e-06 Score=54.02 Aligned_cols=71 Identities=8% Similarity=0.120 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26899877887765---455567999998875401121101355544344455554431112345899999999999852
Q gi|254781174|r 93 ARKSLLMSAFVQYS---AGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERY 169 (271)
Q Consensus 93 a~~A~~~la~~~y~---~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~y 169 (271)
..++.|..|.++.. .+++++|+..|++.++..|+.+ .+++|.+|.+|+++ +...+|+..++++++.-
T Consensus 38 ~~~~~f~~a~~~~~s~~~~~~~~Ai~~l~~~l~~~p~~~--~~~~y~Lg~~y~~l--------g~y~~A~~~~~~aL~l~ 107 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--RECLYYLTIGCYKL--------GEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH--HHHHHHHHHHHHTT--------TCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHCC
T ss_conf 599999999999985985689999999999872179989--99999999999993--------98899999999888349
Q ss_pred HCCH
Q ss_conf 0010
Q gi|254781174|r 170 TNSP 173 (271)
Q Consensus 170 P~S~ 173 (271)
|+.+
T Consensus 108 P~n~ 111 (144)
T 1y8m_A 108 RNNK 111 (144)
T ss_dssp CCCH
T ss_pred CCCH
T ss_conf 8949
No 115
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.43 E-value=6.4e-05 Score=45.50 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999809899999999999853047730268998778877654555679999988754011211013555443
Q gi|254781174|r 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLV 137 (271)
Q Consensus 58 ~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~ 137 (271)
.-....+......|+++.|...|++.+...|... .......+......|+...|...|++.++..|.++.+ +...
T Consensus 100 ~lw~~~a~~e~~~~~~~~a~~i~~~~l~~~~~~~--~~~w~~y~~~~~~~~~~~~a~~i~~~al~~~p~~~~~---~~~~ 174 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV---YVTA 174 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH---HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---HHHH
T ss_conf 9999999999984999989999999988502347--9999999999998188799999999999848996199---9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44455554431112345899999999999852001013456555555566666665556666654432234568999886
Q gi|254781174|r 138 GMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVL 217 (271)
Q Consensus 138 a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i 217 (271)
|...+ ...+....|...|+..+..+|+++..- ...+++..+.|+...|...|+..+
T Consensus 175 a~~e~-------~~~~~~~~a~~i~e~~l~~~~~~~~~w-----------------~~y~~~~~~~g~~~~AR~~ferai 230 (308)
T 2ond_A 175 ALMEY-------YCSKDKSVAFKIFELGLKKYGDIPEYV-----------------LAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHH-------HTSCCHHHHHHHHHHHHHHHTTCHHHH-----------------HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHH-------HHCCCHHHHHHHHHHHHHHCCCCHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999-------856887999999999987589989999-----------------999999998889999999999999
Q ss_pred HHCCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 528998115-99999999999974987999999999978569997899
Q gi|254781174|r 218 ANYSDAEHA-EEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWAR 264 (271)
Q Consensus 218 ~~yp~t~~~-~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~ 264 (271)
..-|.++.. ........+--...|+.+.+.+..+.....+|+.....
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~R~~~~~~~~~~~~ 278 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHCCCCC
T ss_conf 808998789999999999999985999999999999998682001211
No 116
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=1.1e-06 Score=55.89 Aligned_cols=110 Identities=8% Similarity=-0.035 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 78877654555679999988754011211013555443444555544311123458999999999998520010134565
Q gi|254781174|r 100 SAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGAR 179 (271)
Q Consensus 100 la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~ 179 (271)
++..+...+++.+|...|++.++..|.++. +++..|.++... .+.+...+|+..+++.+..-++... .++.
T Consensus 4 l~n~~~~~edl~kAek~Y~~al~~~~~~~~---~~~n~a~~L~~s-----~~~~~~~~Ai~ll~~~l~~~~~~~~-~~~l 74 (152)
T 1pc2_A 4 VLNELVSVEDLLKFEKKFQSEKAAGSVSKS---TQFEYAWCLVRS-----KYNDDIRKGIVLLEELLPKGSKEEQ-RDYV 74 (152)
T ss_dssp CCSCSCCHHHHHHHHHHHHHHHHTTCCCHH---HHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHSCHHHH-HHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHCCCCCCH-HHHH
T ss_conf 887245899999999999998710999999---999999999875-----8777899999999998744699419-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 55555566666665556666654432234568999886528998115999999
Q gi|254781174|r 180 FYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMAR 232 (271)
Q Consensus 180 ~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~ 232 (271)
+.+|..|++.|+|..|+..|+.+++.-|+.+.+...+-+
T Consensus 75 --------------~~La~~y~~~g~~~~A~~~~~~aL~idP~n~qA~~l~~~ 113 (152)
T 1pc2_A 75 --------------FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp --------------HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf --------------999999998699999999999999769398999999999
No 117
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.42 E-value=8.9e-06 Score=50.50 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 87788776545556799999887540-----1121101355544344455554431112345899999999999852001
Q gi|254781174|r 98 LMSAFVQYSAGKYQQAASLGEEYITQ-----YPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 98 ~~la~~~y~~~~y~~A~~~~~~fi~~-----~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
+..+......+++++|+..+++.++. .|.|+.+..++..+|.++.. ++..++|+..+++.++-+...
T Consensus 313 ~e~~~~~~~~~~~~ea~~l~~~~L~~~~~il~~~h~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~l~~~~~~ 384 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY--------LQAYEEASHYARRMVDGYMKL 384 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHH
T ss_conf 787876663367788899999999998750699627789999999999998--------779889999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 013456555555566666665556666654432234568999886528-----998115999999999999749879999
Q gi|254781174|r 173 PYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANY-----SDAEHAEEAMARLVEAYVALALMDEAR 247 (271)
Q Consensus 173 ~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~y-----p~t~~~~eAl~~l~~~y~~lg~~d~A~ 247 (271)
+..+ ...+|..-..+|..|...|++..|+..++..++-. |+.+.+.+....++.+|.++|+.++|.
T Consensus 385 -~g~~--------h~~~a~~~~~lg~~~~~~~~~~~A~~~~~kAl~i~~~~~G~~hp~~~~l~~~l~~~~~~l~~~~~a~ 455 (490)
T 3n71_A 385 -YHHN--------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp -SCTT--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -6999--------9899999999999999878989999999999999999749998429999999999999986578889
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781174|r 248 EVVSLI 253 (271)
Q Consensus 248 ~~~~~l 253 (271)
..+..+
T Consensus 456 ~~~~~~ 461 (490)
T 3n71_A 456 FMYHKM 461 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=2e-06 Score=54.30 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89987788776545556799999887540112110135554434445555443111234589999999999985200
Q gi|254781174|r 95 KSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTN 171 (271)
Q Consensus 95 ~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~ 171 (271)
++.+.+|.+++..|+|++|+..|++.++..|..+. +++.+|.++.. ++...+|+..|+..+...|+
T Consensus 7 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~--------~~~~~~A~~~~~~Al~l~~~ 72 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK---YWLMKGKALYN--------LERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999969999999999999871955599---99988899998--------51089999999999854999
No 119
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.33 E-value=2.9e-06 Score=53.36 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6899877887765455567999998875401121101355544344455554431112345899999999999852001
Q gi|254781174|r 94 RKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNS 172 (271)
Q Consensus 94 ~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S 172 (271)
.++.+.+|.+++.++++++|+..|++.+...|++.. +++.+|.++..+ +...+|+..|++.++..|++
T Consensus 9 a~ay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~P~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---AWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHC--------CCHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999968999999999883860750467---762399999996--------89999999999984758797
No 120
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.31 E-value=7.3e-06 Score=51.02 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 6899999999999809---8999999999998530477302689987788776545556799999887540112110135
Q gi|254781174|r 56 YQREVYEKAVLFLKEQ---NFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDY 132 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~---~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~ 132 (271)
..+..|..|......+ ++.+|+..|++++...|.. ..++.+.+|.+|+.+|+|++|+..+++.++..|+++.
T Consensus 38 ~~~~~f~~a~~~~~s~~~~~~~~Ai~~l~~~l~~~p~~--~~~~~y~Lg~~y~~lg~y~~A~~~~~~aL~l~P~n~~--- 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ--- 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH---
T ss_conf 59999999999998598568999999999987217998--9999999999999939889999999988834989499---
Q ss_pred HHHHHHHHHHH
Q ss_conf 55443444555
Q gi|254781174|r 133 VYYLVGMSYAQ 143 (271)
Q Consensus 133 A~y~~a~~~~~ 143 (271)
|+..++.+..+
T Consensus 113 a~~l~~~i~~~ 123 (144)
T 1y8m_A 113 VGALKSMVEDK 123 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 121
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix- turn-helix, repeat protein; 2.00A {Helicobacter pylori 26695} SCOP: a.118.18.1
Probab=98.31 E-value=0.00011 Score=44.20 Aligned_cols=187 Identities=14% Similarity=0.078 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-CCCCCH
Q ss_conf 3689999999999980989999999999985304773026899877887765----45556799999887540-112110
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYS----AGKYQQAASLGEEYITQ-YPESKN 129 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~----~~~y~~A~~~~~~fi~~-~P~s~~ 129 (271)
..|+++|..|..+++++||++|++.|++..+.. -+.|++.+|..|+. .++++.|+..+.+.... +|....
T Consensus 4 ~~~~~l~~lG~~~~~~~d~~~A~~~y~kAa~~g-----~~~A~~~Lg~~y~~G~g~~~d~~~a~~~~~~~a~~~~~~~~~ 78 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCH 78 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 699999999999998689999999999999889-----999999999999869996225999999998755327724544
Q ss_pred H------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHH----
Q ss_conf 1------------------------------35554434445555443111234589999999999985-200101----
Q gi|254781174|r 130 V------------------------------DYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVER-YTNSPY---- 174 (271)
Q Consensus 130 ~------------------------------~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~-yP~S~y---- 174 (271)
. ..|.+.+|..+.... ........+...+...... .|.+-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK----VVTRDFKKAVEYFTKACDLNDGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCS----SSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 1010331266620667779998998987537999999757741688----741568889999999986277489999869
Q ss_pred ----------H-HHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ----------3-456555555-566666665556666654----432234568999886528998115999999999999
Q gi|254781174|r 175 ----------V-KGARFYVTV-GRNQLAAKEVEIGRYYLK----RGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYV 238 (271)
Q Consensus 175 ----------a-~~A~~~l~~-~~~~La~~e~~ia~~Y~~----~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~ 238 (271)
. ..+...+.. ....-+...+.+|..|.. .+++..|+..|+..++. -.++|.+.||..|.
T Consensus 155 ~y~~~~~~~~~~~~~~~~~~~a~~~~~~~A~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-----g~~~A~~~LG~~y~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-----ENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHH
T ss_conf 8765897510199999999998664884699998877117888444799988999999988-----99999999999998
Q ss_pred H-CC---CHHHHHHHHHHHHH
Q ss_conf 7-49---87999999999978
Q gi|254781174|r 239 A-LA---LMDEAREVVSLIQE 255 (271)
Q Consensus 239 ~-lg---~~d~A~~~~~~l~~ 255 (271)
. .| +.++|..+++.-..
T Consensus 230 ~G~g~~~d~~~A~~~~~~Aa~ 250 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
T ss_conf 399974389999999999998
No 122
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.27 E-value=3.6e-06 Score=52.77 Aligned_cols=72 Identities=8% Similarity=-0.055 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 736899999999999809899999999999853047730268998778877654555679999988754011211
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESK 128 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~ 128 (271)
+..+...+..|..+++.|+|++|+..|++++...|.. ..+.+.+|.++..+|++++|+..|++.+...|...
T Consensus 16 pd~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 87 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9989999999999998599999999999978874305---99999999999997899999999999996485173
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.26 E-value=0.0001 Score=44.27 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=111.8
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 80989999999999985304773026899877887765455567999998875401121101355544344455554431
Q gi|254781174|r 69 KEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDV 148 (271)
Q Consensus 69 ~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~ 148 (271)
..+..+.|...|++.+..+|.+ .....+..+......++++.|...|++.+...|..+...+..|.. .
T Consensus 76 ~~~~~e~a~~i~~ral~~~~~~--~~~lw~~~a~~e~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~y~~----------~ 143 (308)
T 2ond_A 76 AKLFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK----------F 143 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHH----------H
T ss_pred HHCCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----------H
T ss_conf 0013499999999999875998--699999999999984999989999999988502347999999999----------9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 112345899999999999852001013456555555566666665556666-6544322345689998865289981159
Q gi|254781174|r 149 PYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRY-YLKRGEYVAAIPRFQLVLANYSDAEHAE 227 (271)
Q Consensus 149 ~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~-Y~~~~~y~aA~~~~~~~i~~yp~t~~~~ 227 (271)
.+..+....|...|++.++..|.+...-- ..|.+ +...++...|...|+..++.+|+++
T Consensus 144 ~~~~~~~~~a~~i~~~al~~~p~~~~~~~-----------------~~a~~e~~~~~~~~~a~~i~e~~l~~~~~~~--- 203 (308)
T 2ond_A 144 ARRAEGIKSGRMIFKKAREDARTRHHVYV-----------------TAALMEYYCSKDKSVAFKIFELGLKKYGDIP--- 203 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHTSTTCCTHHHH-----------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---
T ss_conf 99818879999999999984899619999-----------------9999999856887999999999987589989---
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999997498799999999997856999
Q gi|254781174|r 228 EAMARLVEAYVALALMDEAREVVSLIQERYPQG 260 (271)
Q Consensus 228 eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s 260 (271)
+.....++-....|+.+.|+..++......|.+
T Consensus 204 ~~w~~y~~~~~~~g~~~~AR~~ferai~~~~~~ 236 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999998889999999999999808998
No 124
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, glycoprotein, metal-binding, oxidoreductase, iron, vitamin C, TPR repeat, dioxygenase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.20 E-value=6.9e-06 Score=51.16 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26899877887765455567999998875401121101----35554434445555443111234589999999999985
Q gi|254781174|r 93 ARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV----DYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVER 168 (271)
Q Consensus 93 a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~----~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~ 168 (271)
..+.-+.+|..+++.|+|++|+..|++.++..|.++.. ..++..+|.|++++ +...+|+..+++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~lg~~~~~~--------g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ--------GDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHH
T ss_conf 69999999999999689999999999998754356756552999999999999985--------9837999999999975
Q ss_pred HHCCH
Q ss_conf 20010
Q gi|254781174|r 169 YTNSP 173 (271)
Q Consensus 169 yP~S~ 173 (271)
.|+++
T Consensus 76 ~P~~~ 80 (104)
T 2v5f_A 76 DPEHQ 80 (104)
T ss_dssp CTTCH
T ss_pred CCCCH
T ss_conf 96989
No 125
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.18 E-value=3.9e-05 Score=46.73 Aligned_cols=116 Identities=9% Similarity=-0.009 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 76545556799999887540112110135554434445555443--1112345899999999999852001013456555
Q gi|254781174|r 104 QYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRD--VPYDQRATKLMLQYMSRIVERYTNSPYVKGARFY 181 (271)
Q Consensus 104 ~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~--~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~ 181 (271)
+.+...|++|+..+++.+...|+++. +++..|.++.++..- ..-..+...+|+..|++.+..-|+.. +|...
T Consensus 12 ~~r~~~feeA~~~~e~a~~~~P~~~~---a~~n~G~al~~l~~~~~~~ea~~~~~eAi~~~~kAl~l~P~~~---~a~~n 85 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDAD---NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---EAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHH
T ss_conf 99888899999999999975987799---9999999999977730248788679999999999985698989---99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 55556666666555666665443223456899988652899811599
Q gi|254781174|r 182 VTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEE 228 (271)
Q Consensus 182 l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~e 228 (271)
+..+...++. ..++.....+.|..|+..|+..++.-|+.+....
T Consensus 86 lG~a~~~~g~---l~~~~~~a~~~~e~A~~~f~kAl~~~P~n~~y~~ 129 (158)
T 1zu2_A 86 IGNAYTSFAF---LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999998650---1210999986499999999999974999899999
No 126
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1
Probab=98.13 E-value=3.6e-05 Score=46.93 Aligned_cols=66 Identities=15% Similarity=0.072 Sum_probs=58.8
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999999809899999999999853047730268998778877654555679999988754011211013
Q gi|254781174|r 63 KAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD 131 (271)
Q Consensus 63 ~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~ 131 (271)
++...+++|++++|+..+++.+...|.+. ++...+|..+...|++++|+..+++.++..|+++.+.
T Consensus 3 q~~~aL~~G~l~eAl~~l~~alr~~P~da---~ar~~L~~lL~~~G~~~~A~~qL~~a~~l~P~~~~~~ 68 (273)
T 1zbp_A 3 QWKNALSEGQLQQALELLIEAIKASPKDA---SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp CHHHHTTTTCHHHHHHHHHHHHHTCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 69999987999999999999999789999---9999999999987999999999999998798868999
No 127
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.09 E-value=5.5e-06 Score=51.72 Aligned_cols=60 Identities=7% Similarity=-0.024 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999998098999999999998530477302689987788776545556799999887
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEY 120 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~f 120 (271)
+....+.|..+.+.|++++|+..|+++....|. +.+...+|.+|.++|++++|+..+++.
T Consensus 61 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 120 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARE----SYVETELIFALAKTNRLAELEEFINGP 120 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 899999999999879999999999998640874----699999999999869989999999874
No 128
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=1.6e-05 Score=48.99 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30268998778877654555679999988754011211013555443444555544311123458999999999998520
Q gi|254781174|r 91 GVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYT 170 (271)
Q Consensus 91 ~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP 170 (271)
|-.+.+.+.+|.+|+..|++++|+..|++.++..|++. .+++.+|.++..+ +...+|+..|+..++..|
T Consensus 4 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ai~~~p~~~---~a~~~lg~~~~~~--------g~~~eA~~~y~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV---GTYYHLGKLYERL--------DRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHCCC
T ss_conf 89699999999999995999999999998774496469---9999999999996--------899999999999986487
Q ss_pred CCH
Q ss_conf 010
Q gi|254781174|r 171 NSP 173 (271)
Q Consensus 171 ~S~ 173 (271)
+..
T Consensus 73 ~~~ 75 (100)
T 3ma5_A 73 EEG 75 (100)
T ss_dssp HHS
T ss_pred CCC
T ss_conf 542
No 129
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.00 E-value=2e-05 Score=48.40 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 877887765455567999998875401121101355544344455554431112345899999999999852001013
Q gi|254781174|r 98 LMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYV 175 (271)
Q Consensus 98 ~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya 175 (271)
+..|..++.+|+|++|+..|++.|+..|++ .+.|++.+|.+++.+ +...+|+..|++.++.-|+++-+
T Consensus 4 l~~~~~L~~qG~~~~Ai~~~~~al~~~P~~--~~~a~~~lG~~~~~~--------g~~~~Ai~~~~kal~i~P~~~~~ 71 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKL--------GDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHCHHHCCC--------CCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 899999999689999999999998728988--999999857031024--------87999999999999849899999
No 130
>2pqr_A Mitochondria fission 1 protein; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} PDB: 2pqn_A
Probab=97.99 E-value=2.2e-05 Score=48.19 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 368999999999998098---9999999999985304773026899877887765455567999998875401121101
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQN---FSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV 130 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~---y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~ 130 (271)
.+++..|+.|+.....++ ..+|+..++++....|.. ..++++.+|.+||++|+|++|...+++.++..|+++.+
T Consensus 37 ~~~q~~F~yA~~L~kS~~~~~~~~gI~lLe~l~~~~p~~--~rd~lY~La~~y~~lg~y~~A~~~~~~~L~~~P~n~qA 113 (129)
T 2pqr_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (129)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHTTCHHHHHHHHHC-----------
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 868889999999982697999999999999998719961--89999999999998257999999999998629897999
No 131
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.87 E-value=0.00052 Score=40.18 Aligned_cols=56 Identities=9% Similarity=-0.075 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 55666665443223456899988652899811599999999999974987999999999
Q gi|254781174|r 194 VEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSL 252 (271)
Q Consensus 194 ~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~ 252 (271)
+.+|+.|..+++|..|+..|+..++..|++. .+.+.||.+|...|+..+|..++..
T Consensus 156 ~~LG~l~r~~~~~~~A~~~y~~A~~l~P~~~---~~~~~lg~l~~~~~~~~~A~~~y~r 211 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNG---QPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999985799999999999998788989---9999999999987999999999999
No 132
>3pdn_A SET and MYND domain-containing protein 3; rossmann fold, zinc finger, methyltransferase, transferase, transferase-transferase inhibitor complex; HET: SFG; 1.70A {Homo sapiens} PDB: 3mek_A*
Probab=97.82 E-value=0.00087 Score=38.89 Aligned_cols=77 Identities=6% Similarity=-0.035 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----CC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH----HHHHC-CCCHHH
Q ss_conf 55666665443223456899988652----89-9811599999999999974987999999999----97856-999789
Q gi|254781174|r 194 VEIGRYYLKRGEYVAAIPRFQLVLAN----YS-DAEHAEEAMARLVEAYVALALMDEAREVVSL----IQERY-PQGYWA 263 (271)
Q Consensus 194 ~~ia~~Y~~~~~y~aA~~~~~~~i~~----yp-~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~----l~~~y-P~s~~~ 263 (271)
-.+|..|...|+|..|+..+...++- || +.+....++..++.+|..+|..++|.++++. +...| |++...
T Consensus 332 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~i~~~~~G~~Hp~~ 411 (428)
T 3pdn_A 332 DCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 411 (428)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999988630499999999999999998749998999999999999999878999999999999999999819998699
Q ss_pred HHHHHHH
Q ss_conf 9999860
Q gi|254781174|r 264 RYVETLV 270 (271)
Q Consensus 264 ~~a~~~l 270 (271)
+....+|
T Consensus 412 ~~~~~~L 418 (428)
T 3pdn_A 412 EDLILLL 418 (428)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646}
Probab=97.62 E-value=0.0024 Score=36.34 Aligned_cols=176 Identities=9% Similarity=0.053 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH--
Q ss_conf 999999999998098999999999998530477302689987---788776545556799999887540112110135--
Q gi|254781174|r 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLM---SAFVQYSAGKYQQAASLGEEYITQYPESKNVDY-- 132 (271)
Q Consensus 58 ~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~---la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~-- 132 (271)
..+..........+++.++...........+.+......... .+..+...++.+.+...++..+.....+.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999998753100118999999999877531248899999999999999854459999999999987511134077898
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -5544344455554431112345899999999999852001013456555555566666665556666654432234568
Q gi|254781174|r 133 -VYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIP 211 (271)
Q Consensus 133 -A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~ 211 (271)
.....+.+++ +......|+..+...++.+.+.+........ -.+.+|..|...++|..|..
T Consensus 156 ~~~~~l~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------i~~nl~~~~~~~~~y~~Al~ 217 (293)
T 2qfc_A 156 YIENAIANIYA--------ENGYLKKGIDLFEQILKQLEALHDNEEFDVK----------VRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH----------HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHCHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_conf 88400011278--------7676899999999999999874752136888----------99889999999856999999
Q ss_pred HHHHHHHH---CCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHH
Q ss_conf 99988652---89981159999999999997498-799999999
Q gi|254781174|r 212 RFQLVLAN---YSDAEHAEEAMARLVEAYVALAL-MDEAREVVS 251 (271)
Q Consensus 212 ~~~~~i~~---yp~t~~~~eAl~~l~~~y~~lg~-~d~A~~~~~ 251 (271)
.++..++- ..+.....+.++.+|.++..+|. .++|++.++
T Consensus 218 ~~~~ai~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~a~~~~~ 261 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999987798999999999999999980998999999999
No 134
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1
Probab=97.61 E-value=0.00091 Score=38.77 Aligned_cols=130 Identities=12% Similarity=-0.065 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 88776545556799999887540112110135554434445555443111234589999999999985200101345655
Q gi|254781174|r 101 AFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARF 180 (271)
Q Consensus 101 a~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~ 180 (271)
+......|++++|+..+++.++..|+++. +....|..+.. .+...+|++.++..++..|++..+.....
T Consensus 4 ~~~aL~~G~l~eAl~~l~~alr~~P~da~---ar~~L~~lL~~--------~G~~~~A~~qL~~a~~l~P~~~~~~~~~~ 72 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDAS---LRSSFIELLCI--------DGDFERADEQLMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHH---HHHHHHHHHHH--------HTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHH--------CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999879999999999999997899999---99999999998--------79999999999999987988689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 55555666666655566666544322345689998865289981159999999999997498799999999997856999
Q gi|254781174|r 181 YVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG 260 (271)
Q Consensus 181 ~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s 260 (271)
.+ ++....+ ...+... .....+..+....++...+.++...|+.++|...+..+..--|++
T Consensus 73 ~l--l~a~~~r--------------~e~~a~~---~~~~~~~~p~~~~a~l~~a~~~~~~Gd~e~A~~~~~~A~~l~P~~ 133 (273)
T 1zbp_A 73 HL--VKAAQAR--------------KDFAQGA---ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HH--HHHHHHH--------------HHHTTSC---CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HH--HHHCCCC--------------HHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99--9834575--------------8999999---986331397689999999999997789899999999997369999
No 135
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.42 E-value=0.0026 Score=36.08 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=22.2
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHH
Q ss_conf 556666654----4322345689998865289981159999999999997----4987999999999
Q gi|254781174|r 194 VEIGRYYLK----RGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVA----LALMDEAREVVSL 252 (271)
Q Consensus 194 ~~ia~~Y~~----~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~----lg~~d~A~~~~~~ 252 (271)
+.+|..|+. ..++..|+..|+...+.. ++|.+.|+..|.. ..+.++|..++..
T Consensus 287 ~~Lg~~y~~G~g~~~d~~~A~~~~~~aa~~~------~~A~~~Lg~~y~~G~~~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 287 LLLGKLYYEGKWVPADAKAAEAHFEKAVGRE------VAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHTTTTTC------HHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9999999859988869999999999860157------999999999998699988889999999999
No 136
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.38 E-value=0.002 Score=36.81 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 432234568999886528998-11599999999999974987999999999978569997899999860
Q gi|254781174|r 203 RGEYVAAIPRFQLVLANYSDA-EHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVETLV 270 (271)
Q Consensus 203 ~~~y~aA~~~~~~~i~~yp~t-~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~l 270 (271)
.+++.++.. .+...|.+ .....+.|+++.++..+|..++|...+..+. +|.+.+.-.|-..|
T Consensus 298 ~~~~~~~~~----~~~~l~~s~~~~~rw~YW~aRa~~~~G~~~~A~~~~~~aa--~~~tfYG~LAa~~L 360 (618)
T 1qsa_A 298 TGDRRGLNT----WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM--QQRGFYPMVAAQRI 360 (618)
T ss_dssp HTCHHHHHH----HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TSCSHHHHHHHHHT
T ss_pred CCCHHHHHH----HHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCCHHHHHHHHH
T ss_conf 578688998----7622880202277899887999986476789999999861--76561699999985
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646}
Probab=97.34 E-value=0.0055 Score=34.23 Aligned_cols=135 Identities=10% Similarity=-0.049 Sum_probs=76.8
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----HHHH
Q ss_conf 999999980989999999999985304773---026899877887765455567999998875401121101----3555
Q gi|254781174|r 62 EKAVLFLKEQNFSKAYEYFNQCSRDFPFAG---VARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV----DYVY 134 (271)
Q Consensus 62 ~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~---~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~----~~A~ 134 (271)
..+......+++..+...++.+........ ........++..++..++++.|+..+++.++.+.+.+.. ...+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999985445999999999998751113407789888400011278767689999999999999987475213688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 44344455554431112345899999999999852001013456555555566666665556666654432-23456899
Q gi|254781174|r 135 YLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGE-YVAAIPRF 213 (271)
Q Consensus 135 y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~-y~aA~~~~ 213 (271)
+..|.++.. ++...+|+..++..+...+..... . .++.-.+..|..|...++ +.+|...+
T Consensus 200 ~nl~~~~~~--------~~~y~~Al~~~~~ai~~~~~~~~~----~-------~l~~~~~~~g~~~~~~~~~~~~a~~~~ 260 (293)
T 2qfc_A 200 YNHAKALYL--------DSRYEESLYQVNKAIEISCRINSM----A-------LIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTBC----S-------SHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHCCCH----H-------HHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 889999999--------856999999999999999877989----9-------999999999999998099899999999
Q ss_pred HH
Q ss_conf 98
Q gi|254781174|r 214 QL 215 (271)
Q Consensus 214 ~~ 215 (271)
+.
T Consensus 261 ~k 262 (293)
T 2qfc_A 261 KK 262 (293)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 138
>3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.34 E-value=0.0015 Score=37.51 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 8999999999998098---9999999999985304773026899877887765455567999998875401121101
Q gi|254781174|r 57 QREVYEKAVLFLKEQN---FSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNV 130 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~---y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~ 130 (271)
+..+=..|...+...+ -.+|...+++++...|.. +.+.+.+|.+++..|+|++|+..+++.++.-|.++..
T Consensus 6 a~~l~~~A~al~~~~~~~~t~ea~~~l~~aL~~~P~~---~~al~~lg~~~~~~g~y~~Ai~~w~~lL~~~p~~~~r 79 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 9999999999999959988999999999999778698---9999999999998689999999999998428998119
No 139
>3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0013 Score=37.85 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899877887765455---56799999887540112110135554434445555443111234589999999999985200
Q gi|254781174|r 95 KSLLMSAFVQYSAGK---YQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERYTN 171 (271)
Q Consensus 95 ~A~~~la~~~y~~~~---y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~ 171 (271)
..+-..|.+.|...+ .++|...+++.+...|+++. |+|+.|++++.. +...+|+..++.++..-|+
T Consensus 7 ~~l~~~A~al~~~~~~~~t~ea~~~l~~aL~~~P~~~~---al~~lg~~~~~~--------g~y~~Ai~~w~~lL~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---ALSLIANDHFIS--------FRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHT--------TCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHC--------CCHHHHHHHHHHHHHCCCC
T ss_conf 99999999999995998899999999999977869899---999999999986--------8999999999999842899
Q ss_pred CH
Q ss_conf 10
Q gi|254781174|r 172 SP 173 (271)
Q Consensus 172 S~ 173 (271)
++
T Consensus 76 ~~ 77 (93)
T 3bee_A 76 NL 77 (93)
T ss_dssp TC
T ss_pred CC
T ss_conf 81
No 140
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.13 E-value=0.0057 Score=34.13 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=33.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHH
Q ss_conf 556666654----4322345689998865289981159999999999997----4987999999999
Q gi|254781174|r 194 VEIGRYYLK----RGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVA----LALMDEAREVVSL 252 (271)
Q Consensus 194 ~~ia~~Y~~----~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~----lg~~d~A~~~~~~ 252 (271)
+.+|.+|.. ..++..|+..|+...+. + .++|.+.|+..|.. ..+..+|..+++.
T Consensus 322 ~~Lg~~y~~G~~~~~d~~~A~~~~~~AA~~--g---~~~A~~~L~~~y~~G~g~~~d~~~A~~w~~~ 383 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARN--G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 999999986999888899999999999988--8---9999999999998299989899999999999
No 141
>2pqr_A Mitochondria fission 1 protein; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} PDB: 2pqn_A
Probab=97.13 E-value=0.0025 Score=36.20 Aligned_cols=75 Identities=9% Similarity=0.119 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26899877887765---455567999998875401121101355544344455554431112345899999999999852
Q gi|254781174|r 93 ARKSLLMSAFVQYS---AGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYDQRATKLMLQYMSRIVERY 169 (271)
Q Consensus 93 a~~A~~~la~~~y~---~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d~~~~~~A~~~f~~~i~~y 169 (271)
..++.|..|+|.-+ .++..+|+..++..++..|.+. -+++|..|++|++. +...+|...++.+++.-
T Consensus 38 ~~q~~F~yA~~L~kS~~~~~~~~gI~lLe~l~~~~p~~~--rd~lY~La~~y~~l--------g~y~~A~~~~~~~L~~~ 107 (129)
T 2pqr_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--RECLYYLTIGCYKL--------GEYSMAKRYVDTLFEHE 107 (129)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHT--------TCHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHC
T ss_conf 688899999999826979999999999999987199618--99999999999982--------57999999999998629
Q ss_pred HCCHHHHH
Q ss_conf 00101345
Q gi|254781174|r 170 TNSPYVKG 177 (271)
Q Consensus 170 P~S~ya~~ 177 (271)
|+..-+..
T Consensus 108 P~n~qA~~ 115 (129)
T 2pqr_A 108 RNNKQVGA 115 (129)
T ss_dssp --------
T ss_pred CCCHHHHH
T ss_conf 89799999
No 142
>3pdn_A SET and MYND domain-containing protein 3; rossmann fold, zinc finger, methyltransferase, transferase, transferase-transferase inhibitor complex; HET: SFG; 1.70A {Homo sapiens} PDB: 3mek_A*
Probab=96.94 E-value=0.0081 Score=33.23 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999980989999999999985304-----7730268998778877654555679999988754
Q gi|254781174|r 62 EKAVLFLKEQNFSKAYEYFNQCSRDFP-----FAGVARKSLLMSAFVQYSAGKYQQAASLGEEYIT 122 (271)
Q Consensus 62 ~~a~~~~~~~~y~~A~~~f~~i~~~~P-----~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~ 122 (271)
..+...-..+++.+|...++.++.... .+....++.-.++.++...++|++|+..+.+.++
T Consensus 291 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 356 (428)
T 3pdn_A 291 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 356 (428)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 520244320248899999999999998743754311489999999998863049999999999999
No 143
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.75 E-value=2.8e-06 Score=53.47 Aligned_cols=75 Identities=13% Similarity=0.040 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89999999999980989999999999985304773026899877887765455567999998875401121101355544
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYL 136 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~ 136 (271)
|+...+.|..+++.|++.+|++.|.+. .. +.+...+|.++-..|++++|+..++..++..|++ . +...
T Consensus 54 p~vW~~LG~a~l~~g~~~eAI~~Yika--~d------~~ay~~lg~~~~~~g~~eeAi~~l~~a~k~~~~~-~---~~~~ 121 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARES-Y---VETE 121 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SC------CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST-T---TTHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCC--CC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH-H---HHHH
T ss_conf 899999999998689989999999879--99------9999999999998889999999999998769677-9---9999
Q ss_pred HHHHHHH
Q ss_conf 3444555
Q gi|254781174|r 137 VGMSYAQ 143 (271)
Q Consensus 137 ~a~~~~~ 143 (271)
+|.++.+
T Consensus 122 L~~~y~k 128 (624)
T 3lvg_A 122 LIFALAK 128 (624)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999997
No 144
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix- turn-helix, repeat protein; 2.00A {Helicobacter pylori 26695} SCOP: a.118.18.1
Probab=94.52 E-value=0.17 Score=25.51 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 268998778877654555679999988754011211013555443444555
Q gi|254781174|r 93 ARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQ 143 (271)
Q Consensus 93 a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~ 143 (271)
-|++++.+|..+|..++|++|+..|++..+.. + +.|++.+|.+|..
T Consensus 5 ~~~~l~~lG~~~~~~~d~~~A~~~y~kAa~~g--~---~~A~~~Lg~~y~~ 50 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--E---NSGCFNLGVLYYQ 50 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHC
T ss_conf 99999999999998689999999999999889--9---9999999999986
No 145
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.56 E-value=0.00077 Score=39.21 Aligned_cols=54 Identities=7% Similarity=-0.011 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998098999999999998530477302689987788776545556799999
Q gi|254781174|r 60 VYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLG 117 (271)
Q Consensus 60 lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~ 117 (271)
..+.|..+.+.|+|++|++.|+.+...-|.+. +...+|.+|.+.+++++|+..+
T Consensus 86 y~~lg~~~~~~g~~eeAi~~l~~a~k~~~~~~----~~~~L~~~y~k~~~~~ea~~~l 139 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKKARESY----VETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT----TTHHHHHHHHTSCSSSTTTSTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999988899999999999987696779----9999999999779989999998
No 146
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.19 E-value=0.31 Score=24.05 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 4589999999999985200101345-655555556666----66655566666544322345689998865289981159
Q gi|254781174|r 153 RATKLMLQYMSRIVERYTNSPYVKG-ARFYVTVGRNQL----AAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAE 227 (271)
Q Consensus 153 ~~~~~A~~~f~~~i~~yP~S~ya~~-A~~~l~~~~~~L----a~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~ 227 (271)
+....|+..++..+..|-+...... ....+...+..+ ..--...+..+...|++..|+..++.++...|- .+
T Consensus 129 ~~~~~a~~~l~~Al~LyrG~~L~~~~~~~w~~~~r~~l~~~~~~al~~la~~~l~~g~~~~a~~~~~~~l~~dP~---~E 205 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY---RE 205 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CH
T ss_conf 997999999999999727876788754027899999999999999999999999869889999999999996848---99
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 999999999997498799999999997856
Q gi|254781174|r 228 EAMARLVEAYVALALMDEAREVVSLIQERY 257 (271)
Q Consensus 228 eAl~~l~~~y~~lg~~d~A~~~~~~l~~~y 257 (271)
.+...+..+|...|...+|...+..+....
T Consensus 206 ~~~~~Lm~al~~~G~~~~Al~~Y~~~~~~L 235 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999998699999999999999999
No 147
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=91.03 E-value=0.048 Score=28.74 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999999999722687533
Q gi|254781174|r 13 EAWAYQLYKFALTIFFSIAVCFLVGWERQSSR 44 (271)
Q Consensus 13 ~~~~~~m~k~~~~i~~~i~~~~l~~Cs~~~~~ 44 (271)
++||.+|.......++++++++++||+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 33 (307)
T 1w7f_A 2 KLWFSTLKLKKAAAVLLFSCVALAGCANNQTN 33 (307)
T ss_dssp --------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 16999999999999999999999972234444
No 148
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.92 E-value=0.84 Score=21.49 Aligned_cols=132 Identities=8% Similarity=-0.015 Sum_probs=73.4
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHH
Q ss_conf 09899999999999853047730268998778877654---------55567999998875401121101-355544344
Q gi|254781174|r 70 EQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSA---------GKYQQAASLGEEYITQYPESKNV-DYVYYLVGM 139 (271)
Q Consensus 70 ~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~---------~~y~~A~~~~~~fi~~~P~s~~~-~~A~y~~a~ 139 (271)
.++..++...|++.+...|.+. -+....+..++-+.. +++..+...+++.+..+|+++.. .+..|+.-.
T Consensus 5 ~~~l~~~r~~~E~~l~~~~~~~-DDpl~~W~~YI~w~e~~~p~~~~~~~~~~l~~llER~l~~~~~~~~y~~d~RylklW 83 (202)
T 3esl_A 5 HSQLNQTKIAYEQRLLNDLEDM-DDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIW 83 (202)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGC-SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHH
T ss_conf 7799999999999986355554-662999999999999865134554659999999999998425387650248899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45555443111234589999999999985200101345655555556666666555666665443223456899988652
Q gi|254781174|r 140 SYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLAN 219 (271)
Q Consensus 140 ~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~ 219 (271)
..|-.... .+....|...|+.++......+.+ ... ...|.++...|++..|..-|+.-+..
T Consensus 84 i~Ya~~~~----~~~~~~ar~vy~~~~~~~i~~~~a---~~~------------~~~A~~~e~~~~~~~Ar~Iy~~gi~~ 144 (202)
T 3esl_A 84 IWYINLFL----SNNFHESENTFKYMFNKGIGTKLS---LFY------------EEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHS----TTCHHHHHHHHHHHHHHTSSTTBH---HHH------------HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH----HCCHHHHHHHHHHHHHCCCCCCCH---HHH------------HHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999853----015245999999999828998609---999------------99999999808999999999999875
Q ss_pred CC
Q ss_conf 89
Q gi|254781174|r 220 YS 221 (271)
Q Consensus 220 yp 221 (271)
..
T Consensus 145 ~a 146 (202)
T 3esl_A 145 NC 146 (202)
T ss_dssp TC
T ss_pred CC
T ss_conf 79
No 149
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A
Probab=85.93 E-value=1.3 Score=20.45 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=21.3
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999809899999999999853047730268998778877654555679999988
Q gi|254781174|r 62 EKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEE 119 (271)
Q Consensus 62 ~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~ 119 (271)
.-|...|+.|.|..|.-.|..+. .|+ .+|-|+-.+++|..|+....+
T Consensus 1200 ~VGDrc~~e~~Y~AAkilyt~is------N~a-----kLA~tlV~L~~yq~AVdaArK 1246 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNVS------NFG-----RLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCC------CHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999876147899999999676------289-----999999989888999999986
No 150
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=85.66 E-value=1.3 Score=20.37 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999985304773026899877887765455567999998875401121101355544344455554431112
Q gi|254781174|r 72 NFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYVYYLVGMSYAQMIRDVPYD 151 (271)
Q Consensus 72 ~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A~y~~a~~~~~~~~~~~~d 151 (271)
|+.+|++.|++..... .+.+.+.++. ....++++|+..+++..+. ++ +.|.+.+|..|..- ..+
T Consensus 10 D~~kA~~~~~kaa~~g-----~~~a~~~l~~--~~~~~~~~A~~~~~~aa~~--g~---~~a~~~lg~~y~~g-~~~--- 73 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-----EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NS---GNGCRFLGDFYENG-KYV--- 73 (138)
T ss_dssp HHHHHHHHHHHHHHTT-----CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHC-SSS---
T ss_pred CHHHHHHHHHHHHHCC-----CHHHHHHHHH--CCCCCHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHCC-CCC---
T ss_conf 8999999999999888-----8999999985--6676899999999999988--89---99999999998668-752---
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3458999999999998
Q gi|254781174|r 152 QRATKLMLQYMSRIVE 167 (271)
Q Consensus 152 ~~~~~~A~~~f~~~i~ 167 (271)
..+..+|+..|+...+
T Consensus 74 ~~d~~~A~~~~~~aa~ 89 (138)
T 1klx_A 74 KKDLRKAAQYYSKACG 89 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 2469999999999877
No 151
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=83.75 E-value=1.6 Score=19.86 Aligned_cols=183 Identities=10% Similarity=0.089 Sum_probs=97.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH-
Q ss_conf 99999998098999999999998530477302689987788776545556799999887540112-1101355544344-
Q gi|254781174|r 62 EKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPE-SKNVDYVYYLVGM- 139 (271)
Q Consensus 62 ~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~-s~~~~~A~y~~a~- 139 (271)
-.+...+=+|.|..|+-.+..+ -...+.+.-+.||++.++|..|+..++.+++.--. .|.++ +....-.
T Consensus 38 L~~I~Ly~ngEYsR~Lf~L~~l--------NT~Ts~YYk~LCy~k~KdYkkA~~~le~il~~dve~D~~~~-~~~~~~fv 108 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHKL--------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD-ARIQEMFV 108 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC--------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC-HHHHTTSC
T ss_pred HHHHHHHHCCHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHC
T ss_conf 7777865423487899999833--------40899999999999999999999999999737521487647-41999972
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q ss_conf ------4555544311123458999999999998520010134565555555666----------666655566666544
Q gi|254781174|r 140 ------SYAQMIRDVPYDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQ----------LAAKEVEIGRYYLKR 203 (271)
Q Consensus 140 ------~~~~~~~~~~~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~----------La~~e~~ia~~Y~~~ 203 (271)
-++....+.-+-.+..++|+..+..-.+.+|=-+-++ .+..-++. .+.++=-.-.++-..
T Consensus 109 ~~~DkEff~~l~a~l~t~~g~r~EaI~~~~~Sf~~~~lf~~vE----nl~~eN~ip~~~d~~~I~~~~~~~i~~~y~~d~ 184 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE----NLLLENKVPQKRDKENVRQTGRRGIEEEYVSDS 184 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH----HHHHTTCCCCCC-----------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHH----HHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 8440899999999999983788888789898618771445699----988736687412378898724267177777748
Q ss_pred HHHHHHH--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 3223456--8999886528998115999999999999749879999999999785699
Q gi|254781174|r 204 GEYVAAI--PRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQ 259 (271)
Q Consensus 204 ~~y~aA~--~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~ 259 (271)
-.....+ ...+...+--|+-...- ...-+..|..+|+.|+.+.-+.++...=|.
T Consensus 185 ~~lHe~~s~~~ikkY~n~vPGiGSY~--va~aa~~yf~lg~~d~sr~~F~llR~kDP~ 240 (242)
T 3kae_A 185 IEFHESLSPSLVKKYMEHVPGIGSYF--ISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHCCHHHHHHHHTSTTTHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 99998750778999997588830789--999999997604324678999999811876
No 152
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding, GET5, GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.63 E-value=2.6 Score=18.62 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999980989999999999985304773---0268998778877654555679999988754011211
Q gi|254781174|r 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAG---VARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESK 128 (271)
Q Consensus 61 Y~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~---~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~ 128 (271)
-++=...+++|+|-+|-+.++.+..+|.... .|.+-++.-|..+.+.+++..|.+...-+++.+....
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~RTi~~Ry~~~kky~eAidlL~~gA~~Ll~~~Q~~sg~DL~~lliev~~~~~ 87 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE 87 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999976365808999999999999974117999999999999999977982339999999999998748
No 153
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=77.36 E-value=2.7 Score=18.57 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 2234568999886528998115-99999999999974987999999999
Q gi|254781174|r 205 EYVAAIPRFQLVLANYSDAEHA-EEAMARLVEAYVALALMDEAREVVSL 252 (271)
Q Consensus 205 ~y~aA~~~~~~~i~~yp~t~~~-~eAl~~l~~~y~~lg~~d~A~~~~~~ 252 (271)
.|..|....+..+...|..|.. --||-..+=-|.-+|+.++|.+..+.
T Consensus 174 aY~~A~e~a~~~~~l~pt~PirLGLaLN~SVF~YEI~~~~~kA~~lAk~ 222 (268)
T 3efz_A 174 FYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANR 222 (268)
T ss_dssp HHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999998733379987699999998999999980798999999999
No 154
>2etd_A LEMA protein; TM0961, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.28A {Thermotoga maritima MSB8} SCOP: a.29.9.1
Probab=73.41 E-value=3.4 Score=17.96 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 2345899999999999852001013456555555566666665556666654432234568999886528998115
Q gi|254781174|r 151 DQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHA 226 (271)
Q Consensus 151 d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~ 226 (271)
..+....++..+..+.+.||+- .+......+...+.+-|-.|+ ..|..|-.++..|+..+..||.+-.+
T Consensus 78 a~~~l~~al~~l~a~~E~YP~L----ka~~~~~~l~~el~~~E~~Ia---~aR~~YN~~V~~yN~~i~~FP~~ivA 146 (171)
T 2etd_A 78 ADAELSSALSRLLAIAENYPNL----XADANFRQLMDELAGTENRIA---VARRDYNEAVXXYNTAIXXFPGVIFA 146 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH----HHCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999999999998728666----764999999999999999999---99999999999997072308799999
No 155
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=70.45 E-value=4 Score=17.56 Aligned_cols=47 Identities=11% Similarity=-0.008 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 11599999999999974987999999999978569997899999860
Q gi|254781174|r 224 EHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQGYWARYVETLV 270 (271)
Q Consensus 224 ~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s~~~~~a~~~l 270 (271)
.+.--+|..-....++.+++-.|......|...=|.++...+|++++
T Consensus 204 ~H~~LaLr~Am~~~~K~kN~~tAa~fA~rLL~l~~~~~~a~qArkil 250 (325)
T 3mv2_A 204 IHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIK 250 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999985019999999999997179858999999999
No 156
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.60 E-value=4.8 Score=17.09 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=37.4
Q ss_pred HHHHHHHHHCC---HHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998098---9999999999985304773---0268998778877654555679999988754011211
Q gi|254781174|r 62 EKAVLFLKEQN---FSKAYEYFNQCSRDFPFAG---VARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESK 128 (271)
Q Consensus 62 ~~a~~~~~~~~---y~~A~~~f~~i~~~~P~s~---~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~ 128 (271)
.+=..-+++|+ |-+|-+.++.+..+|.... .|.+-++.-|..+.+.+++..|.+..--+++.+....
T Consensus 17 ~rl~~~I~~G~~~dyYEAhQ~~RTi~~Ry~~~kky~eAidlL~~gA~~Ll~~~Q~~sg~DLa~llvev~~~~~ 89 (336)
T 3lpz_A 17 ARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999778888874999999999999984018999999999999999987981419999999999999749
No 157
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=66.30 E-value=4.8 Score=17.05 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6899999999999809899999999999853047-73--0268998778877---6545556799999887540112
Q gi|254781174|r 56 YQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPF-AG--VARKSLLMSAFVQ---YSAGKYQQAASLGEEYITQYPE 126 (271)
Q Consensus 56 ~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~-s~--~a~~A~~~la~~~---y~~~~y~~A~~~~~~fi~~~P~ 126 (271)
+.+..|..|..+|+.|+|-+|-+.++.+=...+. ++ ..-++++.+|-+. +..|+..-|...+.+-+...-.
T Consensus 31 ~~~~a~~~Gi~lFN~g~y~eaHE~lE~lW~~~~~~~~er~~~QGLIQ~Aaa~~hH~~~gN~~GA~~l~~kA~~~L~~ 107 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 08899999999996899899799999999857898727899999999999999999807889999999999999970
No 158
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=65.35 E-value=5 Score=16.94 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6666544322345689998865289981159999999999997498799999999997856999
Q gi|254781174|r 197 GRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDEAREVVSLIQERYPQG 260 (271)
Q Consensus 197 a~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~A~~~~~~l~~~yP~s 260 (271)
.......+.|--|++.+..++++=|. .+-+..+++++..+|..-.+.-.-..+..+||.|
T Consensus 1291 ~~~~~~~~~~g~~~k~~~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1291 LWHAYAHGHYGRMYKYVVKLIEEKRT----RDHFVELAAINGALGHEHIRTVINRMMITAFPSS 1350 (1354)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCC
T ss_conf 99999874789999999998753013----6799999999987397999999864067327887
No 159
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=65.14 E-value=5.1 Score=16.92 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999980989999999999985304773026899877887765455567999998875401121
Q gi|254781174|r 58 REVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPES 127 (271)
Q Consensus 58 ~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s 127 (271)
+.....+...+..++...|...++.+....|.. ..+....|.+....++++.|...|++.+...|..
T Consensus 434 e~~l~~~ra~l~~~~~~~A~~~l~~~~~~~~~d---~r~~~~~g~~~l~~g~~~~A~~~f~~vl~~~Pge 500 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE 500 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 889888899885347999999999998766731---8899999999885599999999999999846887
No 160
>3kez_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=60.22 E-value=6.3 Score=16.39 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67368999999999998098999999999998530477302689987788776545556799999887540
Q gi|254781174|r 53 DVRYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQ 123 (271)
Q Consensus 53 ~~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~ 123 (271)
...+.++.|+.....++ +|+..+..-.....-+. .-|...+|.++...++|++|+...+++|+.
T Consensus 162 ~r~~~~ev~~~i~~dL~-----~A~~~Lp~~~~~~r~tk--~aA~al~Arv~l~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 162 ARNTVAECYTEIISDLK-----NSTELLSGDFNKGKVNR--WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CCCBHHHHHHHHHHHHH-----HHHHHSCCSCCTTSCCH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----HHHHCCCCCCCCCCCCH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 66759999999999999-----99862533555784569--999999999998746899999999999986
No 161
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus HB8} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=60.14 E-value=6.3 Score=16.38 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHH
Q ss_conf 9999999980989999999999985304773-026899877887765
Q gi|254781174|r 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAG-VARKSLLMSAFVQYS 106 (271)
Q Consensus 61 Y~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~-~a~~A~~~la~~~y~ 106 (271)
|..|..+|+.|+|-+|-+.++.+=...|+++ ..-+++..+|-+.+.
T Consensus 5 ~~~gi~lfn~g~~~eaHE~lE~~W~~~~~~er~~~qgLIq~A~a~~h 51 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQ 51 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998589889889999999841896028999999999999999
No 162
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, structural genomics, structural genomics consortium; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=58.73 E-value=6.7 Score=16.24 Aligned_cols=64 Identities=16% Similarity=0.058 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999980989999999999985304--77302--6899877887765455567999998875401
Q gi|254781174|r 60 VYEKAVLFLKEQNFSKAYEYFNQCSRDFP--FAGVA--RKSLLMSAFVQYSAGKYQQAASLGEEYITQY 124 (271)
Q Consensus 60 lY~~a~~~~~~~~y~~A~~~f~~i~~~~P--~s~~a--~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~ 124 (271)
+.-.|..+-+.|.|++.++..++++..-+ ++++. ++.+|..|+-.. .+..-.|...........
T Consensus 9 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLs~eERnLlsvayKn~-i~~~R~s~R~l~~~e~k~ 76 (227)
T 2o8p_A 9 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHK-ISDYRTMTSQVLQEQTKQ 76 (227)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 99999999997069999999999997215578889989999999999886-512199999999998775
No 163
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=54.10 E-value=8 Score=15.78 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH------HHHHHHHHHHH
Q ss_conf 99877887765455567999998875401121101355------54434445555
Q gi|254781174|r 96 SLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV------YYLVGMSYAQM 144 (271)
Q Consensus 96 A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A------~y~~a~~~~~~ 144 (271)
=..+++...-++-....++..|++|++.||+-+....| ....|+-||.+
T Consensus 40 y~vlvseil~qqT~~~~v~~~~~~~~~~~pt~~~la~a~~~ev~~~~~~lGyy~r 94 (369)
T 3fsp_A 40 YKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSR 94 (369)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHTTTTSSCTHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCHHHH
T ss_conf 9999999986108788999999999997789999977899999999874688999
No 164
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=51.57 E-value=8.8 Score=15.54 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 36899999999999809899999999999853
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRD 86 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~ 86 (271)
..+..+..+|...-+.|+|.+|+..|.+.+..
T Consensus 13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~ai~~ 44 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999869999999999999999
No 165
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=46.14 E-value=11 Score=15.03 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 899999999999809899999999999853
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRD 86 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~ 86 (271)
+..+..+|...-+.|+|.+|+..|.+.+..
T Consensus 18 A~~l~~~Av~~D~~~~y~~A~~~Y~~aie~ 47 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999998848999999999999999
No 166
>3i4g_A SUSD-like carbohydrate binding protein BF1063; YP_210668.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=46.09 E-value=11 Score=15.03 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 73689999999999980989999999999985---30477302689987788776545556799999887540112110
Q gi|254781174|r 54 VRYQREVYEKAVLFLKEQNFSKAYEYFNQCSR---DFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKN 129 (271)
Q Consensus 54 ~~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~---~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~ 129 (271)
..+.++.|+.-... .++|+..+..... ...+..-..-|...+|.++...+++..|...++..+...+.+..
T Consensus 160 r~t~~evy~~I~~D-----L~~A~~~Lp~~~~~~~~~~gr~tk~aa~allar~~L~~~~~~~a~~~~~~~i~~~~~~~~ 233 (528)
T 3i4g_A 160 KTSQADILKWCVTE-----FTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMELGDNAIN 233 (528)
T ss_dssp CBCHHHHHHHHHHH-----HHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCHHHHHHHHHHH-----HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC
T ss_conf 45399999999998-----999998475456665331464589999999988866300479999999999874202223
No 167
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=45.00 E-value=11 Score=14.93 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999998098999999999998530---47730268998778877654555679999988754
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRDF---PFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYIT 122 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~---P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~ 122 (271)
.+.+.-.|.-.-+.++|++.+...+.+.... |.-..-++.+|-.|+-.. .|..-.|.........
T Consensus 28 Re~~v~~AklaeqaeRyddM~~~mK~v~~~~~~~~eLs~EERnLLSvayKn~-i~~rR~s~R~l~sieq 95 (260)
T 2npm_A 28 RESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNA-VGSRRSSWRIISSVEQ 95 (260)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_conf 8999999999998748999999999999861579999989999999999655-2320899999979999
No 168
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, cytoplasm, transport, ESCRT-III, MVB, VPS2, VPS4, SKD1; 1.98A {Saccharomyces cerevisiae}
Probab=42.90 E-value=12 Score=14.74 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 899999999999809899999999999853
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSRD 86 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~ 86 (271)
+..+.++|...-+.|+|.+|+..|.+.+..
T Consensus 13 A~~l~~~Av~~D~~g~y~eA~~~Y~~ai~~ 42 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999998868999999999999999
No 169
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=39.18 E-value=14 Score=14.39 Aligned_cols=46 Identities=9% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH------HHHHHHHHHH
Q ss_conf 877887765455567999998875401121101355------5443444555
Q gi|254781174|r 98 LMSAFVQYSAGKYQQAASLGEEYITQYPESKNVDYV------YYLVGMSYAQ 143 (271)
Q Consensus 98 ~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~~A------~y~~a~~~~~ 143 (271)
.+++...-++-..+..+..|++|++.||+-.....| ....|+.||.
T Consensus 52 vlvseimlqQT~~~~V~~~~~~~~~r~Pt~~~LA~A~~~ev~~~~~glGyy~ 103 (287)
T 3n5n_X 52 VWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYYS 103 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCHHH
T ss_conf 9999999811869999999999999877999997679999999998563899
No 170
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=38.67 E-value=7.3 Score=16.01 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999972268753
Q gi|254781174|r 19 LYKFALTIFFSIAVCFLVGWERQSS 43 (271)
Q Consensus 19 m~k~~~~i~~~i~~~~l~~Cs~~~~ 43 (271)
|.|...++..+.+++.|+||++...
T Consensus 7 ~~~~~a~~~~~~~~~~LaaCg~~~~ 31 (535)
T 3omb_A 7 MVKAGAVACAVALLGSLSACGGSKK 31 (535)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999999999970089999
No 171
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.38 E-value=16 Score=14.03 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 544322345689998865289981159999999
Q gi|254781174|r 201 LKRGEYVAAIPRFQLVLANYSDAEHAEEAMARL 233 (271)
Q Consensus 201 ~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l 233 (271)
++.++|..|..-.+.+++.=|..+.+++|...+
T Consensus 209 ~K~kNy~tAa~fa~rLL~l~~~~~~~eqarkil 241 (320)
T 3mkr_B 209 FKLKNFRTAAAFARRLLELGPKPEVAQQTRKIL 241 (320)
T ss_dssp HHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 986229999999999986289868999999999
No 172
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.31 E-value=16 Score=14.03 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 89999999999980989999999999985
Q gi|254781174|r 57 QREVYEKAVLFLKEQNFSKAYEYFNQCSR 85 (271)
Q Consensus 57 ~~~lY~~a~~~~~~~~y~~A~~~f~~i~~ 85 (271)
+...=.+|..++.+|.|++||+..+....
T Consensus 15 AH~~~RRAEr~l~~grfdEAIeCH~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99998889999985878999999999999
No 173
>2vkj_A TM1634; membrane protein, X-RAY, TPR motif, SAD, joint center for structural genomics, JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=35.19 E-value=16 Score=14.02 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 555566666665556666654432234568999886528998115999999999999
Q gi|254781174|r 182 VTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYV 238 (271)
Q Consensus 182 l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~ 238 (271)
|..+++.-|+.-+.-|+-.++..+|..|+.-|..+++.-.+-....-+-+.+.++-.
T Consensus 45 m~llkekkarsl~ae~kdl~~~anygealv~fek~~nls~neeikki~~fy~eec~k 101 (106)
T 2vkj_A 45 MELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899988889999998888998714116899999980465279999999999999998
No 174
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.06 E-value=16 Score=14.00 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7887765455567999998875
Q gi|254781174|r 100 SAFVQYSAGKYQQAASLGEEYI 121 (271)
Q Consensus 100 la~~~y~~~~y~~A~~~~~~fi 121 (271)
+|.-|=..|+|+.|+..|+.++
T Consensus 18 lARe~Al~GnYdsa~vyY~g~~ 39 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999758379999999999
No 175
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=34.98 E-value=16 Score=14.00 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999980989999999999
Q gi|254781174|r 60 VYEKAVLFLKEQNFSKAYEYFNQ 82 (271)
Q Consensus 60 lY~~a~~~~~~~~y~~A~~~f~~ 82 (271)
+-.+|...-+.|+|.+|+..|.+
T Consensus 22 ~a~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998887899999999999
No 176
>2v1t_A Mitochondrial import receptor subunit TOM20 homolog; outer membrane, transit peptide, phosphorylation, mitochondrion, transmembrane, oxidoreductase, protein transport, NAD; 1.92A {Rattus norvegicus} PDB: 2v1s_A
Probab=32.82 E-value=18 Score=13.79 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=8.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 9999980989999999999985304
Q gi|254781174|r 64 AVLFLKEQNFSKAYEYFNQCSRDFP 88 (271)
Q Consensus 64 a~~~~~~~~y~~A~~~f~~i~~~~P 88 (271)
|+.+..+|++++|+..|-..+.-+|
T Consensus 24 GE~L~~~g~~~~g~~hf~nAl~Vc~ 48 (73)
T 2v1t_A 24 GEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9999868988899999999998778
No 177
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.19 E-value=26 Score=12.76 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 5566666544322345689998865289981159999999999997498799
Q gi|254781174|r 194 VEIGRYYLKRGEYVAAIPRFQLVLANYSDAEHAEEAMARLVEAYVALALMDE 245 (271)
Q Consensus 194 ~~ia~~Y~~~~~y~aA~~~~~~~i~~yp~t~~~~eAl~~l~~~y~~lg~~d~ 245 (271)
+..|+-.+..|+|.-|..-...++.--|+. ++|...+++++.++|...+
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~---~~ar~l~a~al~~lg~~~~ 501 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDN---RAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHCC
T ss_conf 999999885563689999998998719874---9999999999999987374
No 178
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.00 E-value=26 Score=12.74 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7788776545556799999887540112
Q gi|254781174|r 99 MSAFVQYSAGKYQQAASLGEEYITQYPE 126 (271)
Q Consensus 99 ~la~~~y~~~~y~~A~~~~~~fi~~~P~ 126 (271)
.+|+.+...|+++++...|-+.+..+|+
T Consensus 25 ~~GE~L~~~G~~~eg~~hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999998678888999999999987788
No 179
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=22.99 E-value=27 Score=12.74 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3689999999999980989999999999985304773026899877887765455567999998875401
Q gi|254781174|r 55 RYQREVYEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVARKSLLMSAFVQYSAGKYQQAASLGEEYITQY 124 (271)
Q Consensus 55 ~~~~~lY~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~ 124 (271)
.+.++.|+.....++ +|+..+..-....--+.. -|...+|..+...++|++|....+..++..
T Consensus 158 ~s~~ev~~~Ii~DL~-----~A~~~l~~~~~~gr~tk~--aA~aLlArv~L~~~~~~~a~~~a~~vi~~~ 220 (454)
T 3myv_A 158 STVAQAYDFIIETLE-----EAVTLMSEEKNNGRMNKY--AARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp EEHHHHHHHHHHHHH-----HHHHHCCCSCCTTSCCHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----HHHHHCCCCCCCCCCCHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 879999999999999-----999844022568736499--999999999864135489999999999987
No 180
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding, glyoxylate bypass, nucleotide-binding, protein phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157} PDB: 3lcb_A* 3lc6_A*
Probab=21.79 E-value=28 Score=12.60 Aligned_cols=71 Identities=6% Similarity=-0.021 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999999998098999999999998530477302--68998778877654555679999988754011211013
Q gi|254781174|r 61 YEKAVLFLKEQNFSKAYEYFNQCSRDFPFAGVA--RKSLLMSAFVQYSAGKYQQAASLGEEYITQYPESKNVD 131 (271)
Q Consensus 61 Y~~a~~~~~~~~y~~A~~~f~~i~~~~P~s~~a--~~A~~~la~~~y~~~~y~~A~~~~~~fi~~~P~s~~~~ 131 (271)
=..|...|++++|......-.+=+..|...-.. ..-.-..+.......-|.++...|..++..||+.+.++
T Consensus 28 T~~Ak~RFEqaDW~~vQ~asreRI~lYD~~V~e~v~~L~~~~~~~~~d~~~W~~vK~~Y~~LL~~h~q~ELAE 100 (578)
T 3eps_A 28 TSGAQQRFEQADWHAVQQAMKNRIHLYDHHVGLVVEQLRCITNGQSTDAEFLLRVKEHYTRLLPDYPRFEIAE 100 (578)
T ss_dssp HTTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTCHHHHHHHHHHHHTTTTTCTTHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 8999999986787999999999999999999999999998727444788999999999999971799688998
No 181
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule interacting and trafficking domain; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=21.54 E-value=28 Score=12.57 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=9.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 9999999980989999999999
Q gi|254781174|r 61 YEKAVLFLKEQNFSKAYEYFNQ 82 (271)
Q Consensus 61 Y~~a~~~~~~~~y~~A~~~f~~ 82 (271)
-.+|...-+.|+|.+|+..|.+
T Consensus 15 a~~Av~~D~~g~y~eA~~~Y~~ 36 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKK 36 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999998886999999999999
No 182
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens}
Probab=21.14 E-value=29 Score=12.52 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998530477-30268998778877654------55567999998875401121101-3555443444555544311
Q gi|254781174|r 78 EYFNQCSRDFPFA-GVARKSLLMSAFVQYSA------GKYQQAASLGEEYITQYPESKNV-DYVYYLVGMSYAQMIRDVP 149 (271)
Q Consensus 78 ~~f~~i~~~~P~s-~~a~~A~~~la~~~y~~------~~y~~A~~~~~~fi~~~P~s~~~-~~A~y~~a~~~~~~~~~~~ 149 (271)
..|+.-+..+.+. |+. .++-++.+.. ++...+...+++.+..+|+++.. .+..|..-..-+.
T Consensus 4 ~~fE~~i~~~~~~dPL~----~W~~Yi~w~e~~~~~~~~~~~l~~l~eR~l~~~~~~~~~~~d~RYl~~wi~~~------ 73 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLD----VWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLG------ 73 (164)
T ss_dssp HHHHHHCCCCCSSCTHH----HHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH------
T ss_pred HHHHHHHHHCCCCCCHH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------
T ss_conf 99999997678999579----99999999997564789788899999999986557587743899999999998------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 123458999999999998520010134565555555666666655566666544322345689998865289
Q gi|254781174|r 150 YDQRATKLMLQYMSRIVERYTNSPYVKGARFYVTVGRNQLAAKEVEIGRYYLKRGEYVAAIPRFQLVLANYS 221 (271)
Q Consensus 150 ~d~~~~~~A~~~f~~~i~~yP~S~ya~~A~~~l~~~~~~La~~e~~ia~~Y~~~~~y~aA~~~~~~~i~~yp 221 (271)
.....+.+.|+.+....-.+. -+... ...|.++...|++..|...|+..+..-.
T Consensus 74 ---~~~~~~~~if~~l~~~~i~~~---~a~~~------------i~yA~~~e~~~~~~~Ar~Iy~rgl~~~A 127 (164)
T 2wvi_A 74 ---RLCNEPLDMYSYLHNQGIGVS---LAQFY------------ISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp ---HHCSCHHHHHHHHHHTTSSTT---BHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHHHHCCCCC---CHHHH------------HHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf ---741109999999998287866---29999------------9999999984999999999999988469
No 183
>3eki_A High affinity transport system protein P37; TPP, cell membrane, lipoprotein, membrane, transport protein, palmitate; HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A* 3e78_A*
Probab=21.14 E-value=20 Score=13.47 Aligned_cols=18 Identities=11% Similarity=-0.092 Sum_probs=9.4
Q ss_pred HHHHHHHHHHCCCCCCHH
Q ss_conf 999999985304773026
Q gi|254781174|r 77 YEYFNQCSRDFPFAGVAR 94 (271)
Q Consensus 77 ~~~f~~i~~~~P~s~~a~ 94 (271)
.+.|.++...-|...-.+
T Consensus 77 ~~~fn~lkn~~~~~k~~~ 94 (403)
T 3eki_A 77 KKEFNKLKNANDKTKNFD 94 (403)
T ss_dssp HHHHHHHHHTSTTTTTSC
T ss_pred HHHHHHHHCCCHHHCCCC
T ss_conf 999887643892024787
Done!