HHsearch alignment for GI: 254781175 and conserved domain: cd01684

>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=93.53  E-value=0.67  Score=26.27  Aligned_cols=96  Identities=16%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             CCHHHCCEEEEEEEEECCC----CEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHH
Q ss_conf             1711075199999970379----778999983788871899980568888626310998666322013476315886489
Q gi|254781175|r    9 LQHTIADSITITGIGIHSG----KRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIE   84 (296)
Q Consensus         9 ~Q~Ti~~~v~~~GiGLHsG----~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVE   84 (296)
T Consensus         3 YrETI~~~~eg~~~~~~~g~~~fa~V~l~veP~~~g~G~~F~~-~i~gg--~iP~~f~~ave~Gv~eal~~G--------   71 (115)
T cd01684           3 YKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRGSGLQYES-EVSLG--SLPRSFQNAVEETVRETLQQG--------   71 (115)
T ss_pred             EEECCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEE-EEECC--CCCHHHHHHHHHHHHHHHHCC--------
T ss_conf             7811487288999981599983169999998899999888988-76088--479889999999999999529--------


Q ss_pred             HHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             989999872000599996488783005828999998
Q gi|254781175|r   85 HLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV  120 (296)
Q Consensus        85 HLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~  120 (296)
T Consensus        72 -----v~Gypv~DvkVtL~dG~~h~vdSs~~aF~~A  102 (115)
T cd01684          72 -----LYGWEVTDCKVTLTYGRYHSPVSTAADFREL  102 (115)
T ss_pred             -----CCCCCEEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf             -----8888774589999816304887888899999