HHsearch alignment for GI: 254781175 and conserved domain: cd01684
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=93.53 E-value=0.67 Score=26.27 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=61.1
Q ss_pred CCHHHCCEEEEEEEEECCC----CEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHH
Q ss_conf 1711075199999970379----778999983788871899980568888626310998666322013476315886489
Q gi|254781175|r 9 LQHTIADSITITGIGIHSG----KRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIE 84 (296)
Q Consensus 9 ~Q~Ti~~~v~~~GiGLHsG----~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVE 84 (296)
T Consensus 3 YrETI~~~~eg~~~~~~~g~~~fa~V~l~veP~~~g~G~~F~~-~i~gg--~iP~~f~~ave~Gv~eal~~G-------- 71 (115)
T cd01684 3 YKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRGSGLQYES-EVSLG--SLPRSFQNAVEETVRETLQQG-------- 71 (115)
T ss_pred EEECCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEE-EEECC--CCCHHHHHHHHHHHHHHHHCC--------
T ss_conf 7811487288999981599983169999998899999888988-76088--479889999999999999529--------
Q ss_pred HHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 989999872000599996488783005828999998
Q gi|254781175|r 85 HLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV 120 (296)
Q Consensus 85 HLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~ 120 (296)
T Consensus 72 -----v~Gypv~DvkVtL~dG~~h~vdSs~~aF~~A 102 (115)
T cd01684 72 -----LYGWEVTDCKVTLTYGRYHSPVSTAADFREL 102 (115)
T ss_pred -----CCCCCEEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf -----8888774589999816304887888899999