HHsearch alignment for GI: 254781175 and conserved domain: pfam03331

>pfam03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyse the second step in the biosynthetic pathway for lipid A.
Probab=100.00  E-value=0  Score=779.66  Aligned_cols=275  Identities=41%  Similarity=0.691  Sum_probs=268.4

Q ss_pred             CCCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHH
Q ss_conf             01711075199999970379778999983788871899980568888626310998666322013476315886489989
Q gi|254781175|r    8 RLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLM   87 (296)
Q Consensus         8 ~~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLL   87 (296)
T Consensus         1 mkQ~Ti~~~v~~~GiGLHsG~~v~v~l~PA~~~tGI~F~R~Dl~~-~~~I~a~~~~V~~t~~~T~l~~~~~~V~TvEHLl   79 (276)
T pfam03331         1 MKQRTLKRPVSVSGVGLHTGKKSTLTLEPAKENTGIVFQRTDLSP-YPIIPARPENVRDTMLSTTLGNDGARISTVEHLL   79 (276)
T ss_pred             CCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCC-CCEEEECHHHCCCHHHHCEEECCCCEEEEHHHHH
T ss_conf             976356870799999835796888999958999858999924999-9379855667116002103405995997299999


Q ss_pred             HHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCEEEEEEEE
Q ss_conf             99987200059999648878300582899999885445544478751477046349981771465414766337899970
Q gi|254781175|r   88 AALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEF  167 (296)
Q Consensus        88 AAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~~r~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf  167 (296)
T Consensus        80 AAL~glgIDN~~Ieidg~EvPIlDGSa~~fv~~i~~aGi~eq~~~r~~~~i~~~v~v~~~~~~i~~~P~~~~~i~~~idf  159 (276)
T pfam03331        80 AALAGLGIDNLIIEVDGPEIPIMDGSALPFVELIDQAGIKEQEAAKKIIRIKEPVYVQDGDKFLAAFPSDGLKISYTIDF  159 (276)
T ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCEEEEEEEC
T ss_conf             99997698639999799788833787899999999709876677541478556089998999999976899779999987


Q ss_pred             CCCCCC-CCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCHHHH
Q ss_conf             884313-0002345545778985146503222025788864200032133464564137733106774789972001148
Q gi|254781175|r  168 KNSIIG-FQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKT  246 (296)
Q Consensus       168 ~~~~Ig-~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~Ggsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKi  246 (296)
T Consensus       160 ~~~~ig~~Q~~~~~~~~~~f~~eIa~ARTF~f~~eve~L~~~GL~kGgsl~NaiVi~~-~~vlN~~gLR~~-dE~vRHKi  237 (276)
T pfam03331       160 KHPAIGKSQWYSFVFSQESFRKEIAPARTFGFMREIEYLRSKGLIKGGSLENAIVFDD-DKVLNPPGLRFE-DEPVRHKI  237 (276)
T ss_pred             CCCCCCCCEEEEEEECCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHEEEECC-CCCCCCCCCCCC-CCCCCHHH
T ss_conf             9976575238999766514687750665255099999998779502336789367348-838489887787-81116558


Q ss_pred             HHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             999898997599646899997788089999999998096
Q gi|254781175|r  247 LDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADK  285 (296)
Q Consensus       247 LDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~  285 (296)
T Consensus       238 LDlIGDL~L~G~pi~G~i~a~k~GH~ln~~l~k~l~~dk  276 (276)
T pfam03331       238 LDLIGDLYLLGVPVIGHFIAYKSGHSLNNQLVQKILADQ  276 (276)
T ss_pred             HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             888878986599836999998787699999999987389