Query gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 296
No_of_seqs 133 out of 1538
Neff 5.4
Searched_HMMs 23785
Date Wed Jun 1 01:45:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781175.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ves_A UDP-3-O-[3-hydroxymyris 100.0 0 0 778.0 23.5 283 9-294 3-287 (299)
2 1p42_A UDP-3-O-[3-hydroxymyris 100.0 0 0 726.8 21.2 269 9-289 2-270 (270)
3 3i1m_E 30S ribosomal protein S 73.8 2.4 0.0001 21.5 3.3 37 2-44 70-106 (167)
4 2vqe_E 30S ribosomal protein S 67.7 5.8 0.00024 19.1 4.1 78 2-124 65-142 (162)
5 3ofo_E 30S ribosomal protein S 66.5 4.3 0.00018 19.9 3.3 37 2-44 61-97 (150)
6 1pkp_A Ribosomal protein S5; 2 51.4 8.6 0.00036 18.0 2.7 36 3-44 71-106 (150)
7 2zkq_e 40S ribosomal protein S 48.0 10 0.00044 17.5 2.7 57 29-123 98-154 (179)
8 3bbn_E Ribosomal protein S5; s 43.5 14 0.00057 16.8 2.7 178 79-285 97-290 (308)
9 1j6w_A Autoinducer-2 productio 42.7 3.6 0.00015 20.4 -0.4 53 41-96 17-69 (175)
10 1zun_B Sulfate adenylate trans 40.7 17 0.0007 16.2 2.8 70 47-119 108-179 (434)
11 3jyv_E 40S ribosomal protein S 39.0 12 0.00049 17.2 1.8 15 30-44 91-105 (162)
12 1j98_A Autoinducer-2 productio 36.9 6 0.00025 19.0 0.1 46 79-124 52-108 (157)
13 3ijw_A Aminoglycoside N3-acety 35.3 22 0.00093 15.4 4.7 45 80-124 14-61 (268)
14 1j6x_A Autoinducer-2 productio 31.7 11 0.00048 17.2 0.8 19 79-97 53-71 (160)
15 1vje_A Autoinducer-2 productio 30.8 11 0.00044 17.5 0.5 19 79-97 55-73 (166)
16 1d2e_A Elongation factor TU (E 24.1 18 0.00074 16.1 0.6 54 42-103 65-127 (397)
17 2yuy_A RHO GTPase activating p 22.0 33 0.0014 14.4 1.7 47 77-125 62-109 (126)
18 2elf_A Protein translation elo 21.7 38 0.0016 13.9 3.2 65 37-104 56-121 (370)
19 2aze_A Transcription factor DP 20.9 40 0.0017 13.9 3.2 45 153-213 69-113 (155)
No 1
>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=0 Score=778.04 Aligned_cols=283 Identities=41% Similarity=0.675 Sum_probs=274.6
Q ss_pred CCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHH
Q ss_conf 17110751999999703797789999837888718999805688886263109986663220134763158864899899
Q gi|254781175|r 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMA 88 (296)
Q Consensus 9 ~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLA 88 (296)
+||||+++++|+|+|||||+.|+|+++||++|+||+|+|+|+++ ++.|+|+++||++|.+||+|++++++|+|||||||
T Consensus 3 ~Q~TI~~~i~~~GiGLHsG~~v~v~l~PA~~~tGI~F~R~Dl~~-~~~I~A~~~nV~~t~~~T~l~~~~~~V~TVEHLLA 81 (299)
T 2ves_A 3 KQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDP-VVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLS 81 (299)
T ss_dssp EEEEESSCEEEEEECTTTCSEEEEEEEECCTTCCEEEEETTSSS-CEEEECCGGGBCCCSSSCCEEETTEEEBCCHHHHH
T ss_pred CCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCC-CCEECCCHHHCCCCCCEEEEECCCEEEEEHHHHHH
T ss_conf 87347865999999815797889999989999769999946999-82531018871256402575048269973999999
Q ss_pred HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCEEEEEEEEC
Q ss_conf 99872000599996488783005828999998854455444787514770463499817714654147663378999708
Q gi|254781175|r 89 ALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFK 168 (296)
Q Consensus 89 AL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~~r~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf~ 168 (296)
||+|||||||+||+||+|+|||||||.+||++|++||+++|+++|++++|++||+|+++++++.+.|+++++++|+|+|+
T Consensus 82 AL~glgIDN~~Ievdg~EvPIlDGSA~~fv~~i~~aGi~eq~~~r~~~~I~~~V~v~~~~~~i~~~P~~~~~i~~~i~f~ 161 (299)
T 2ves_A 82 AMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFD 161 (299)
T ss_dssp HHHHHTCCCEEEEESSSBCCCTTSSSHHHHHHHHHHCEEEEEEECCEEEECSCEEEEETTEEEEEECCSSEEEEEECCCC
T ss_pred HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCCCCEEEEEEECC
T ss_conf 99867951499997998678889666999999986388103675327998668999976818997578885579999747
Q ss_pred CCCCCC--CCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCHHHH
Q ss_conf 843130--002345545778985146503222025788864200032133464564137733106774789972001148
Q gi|254781175|r 169 NSIIGF--QKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKT 246 (296)
Q Consensus 169 ~~~Ig~--Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~Ggsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKi 246 (296)
+|.||. |++++++++++|.+||||||||||++|+|+|+++||+|||||+||+|++ +++|+|++||||+ |||||||+
T Consensus 162 ~~~i~~~~q~~~~~~~~~~f~~eia~ARTF~f~~~ve~L~~~Gl~~Ggsl~NaiV~~-~~~vlN~~gLR~~-dE~vRHKi 239 (299)
T 2ves_A 162 HPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGLRYE-DEFVKHKI 239 (299)
T ss_dssp STTTTTSCCEEEEETTTCCHHHHTTTCCCEEEHHHHHHHHHTTCSTTCSTTSSEEEC-SSSBCSTTCCSST-THHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEC-CCCCCCCCCCCCC-CCCHHHHH
T ss_conf 743356512999963862178886566625629999999972851343545469983-8944379887774-70133455
Q ss_pred HHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 999898997599646899997788089999999998096671566207
Q gi|254781175|r 247 LDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVDDH 294 (296)
Q Consensus 247 LDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~~~~~~v~~~ 294 (296)
|||||||||+|+|++|||+|+|+||++|++|+++|+++++|||+++.+
T Consensus 240 LDliGDL~L~G~~i~G~i~a~k~GH~ln~~l~~~L~~~~~~~~~~~~~ 287 (299)
T 2ves_A 240 LDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFE 287 (299)
T ss_dssp HHHHHHHGGGSSEEEEEEEEESCCHHHHHHHHHHHHHCGGGEEEECCS
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 677678986489528999998788589999999997195651688535
No 2
>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} SCOP: d.14.1.7 d.14.1.7 PDB: 1yh8_A* 1yhc_A* 2j65_A* 2ies_A* 2ier_A* 2o3z_A* 2jt2_A* 1xxe_A* 2go3_A* 2go4_A*
Probab=100.00 E-value=0 Score=726.78 Aligned_cols=269 Identities=33% Similarity=0.508 Sum_probs=257.4
Q ss_pred CCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHH
Q ss_conf 17110751999999703797789999837888718999805688886263109986663220134763158864899899
Q gi|254781175|r 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMA 88 (296)
Q Consensus 9 ~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLA 88 (296)
|||||+++++|+|+|||||++|+|+++||++|+||+|+|+|+ .|||+++||++|.+||+|++++++|+|||||||
T Consensus 2 ~Q~Ti~~~i~~~GiGLHsG~~v~l~l~PA~~~tGI~F~R~d~-----~I~a~~~~V~~t~~~T~l~~~g~~V~TVEHLlA 76 (270)
T 1p42_A 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGV-----YIPARHEFVVHTNHSTDLGFKGQRIKTVEHILS 76 (270)
T ss_dssp EEEEESSCEEEEEECTTTCCEEEEEEEECCTTCCEEEEETTE-----EEESSGGGEEECSSSCEEEETTEEEBCCHHHHH
T ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEECCC-----CCCCCHHHCCCCCCCCCCCCCCEEEEEHHHHHH
T ss_conf 885668758999998257947899999189996899984891-----067768651065222203548449987999999
Q ss_pred HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCEEEEEEEEC
Q ss_conf 99872000599996488783005828999998854455444787514770463499817714654147663378999708
Q gi|254781175|r 89 ALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFK 168 (296)
Q Consensus 89 AL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~~r~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf~ 168 (296)
||+|||||||+||+||+|+|||||||++||++|+ +|+++|++++++++|++||+|+++++++.+.|+++|+++|+|||+
T Consensus 77 AL~glgIDN~~Ieidg~EvPIlDGSa~~fv~~I~-~g~~~q~~~~~~~~i~~~i~v~~~~~~i~~~P~~~~~i~~~idf~ 155 (270)
T 1p42_A 77 VLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIR-KNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFK 155 (270)
T ss_dssp HHHHTTCCSEEEEEESSBCCCTTSSSHHHHHHHH-TTEEEEEEECCCEECCSCEEEEETTEEEEEECCSSCEEEEEEECS
T ss_pred HHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHH-HHHHHHCCCCCCEEEECEEEEEECCCEEECCCCCCCEEEEEEECC
T ss_conf 9997698169999699867788986799998761-000121134431575012899706741303799773599999646
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf 84313000234554577898514650322202578886420003213346456413773310677478997200114899
Q gi|254781175|r 169 NSIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLD 248 (296)
Q Consensus 169 ~~~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~Ggsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKiLD 248 (296)
++ ++.|.+.+. ++|.+||||||||||++|+|+|+++||+||||||||+|++ +++++|++||||+ ||||||||||
T Consensus 156 ~~-~~~~~~~~~---~~~~~eIa~ARTF~~~~eve~l~~~Gl~kGgsl~NaiV~~-~~~~ln~~gLR~~-dE~vRHKiLD 229 (270)
T 1p42_A 156 NF-LGRQKFTFV---EGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYE-NEPVRHKVFD 229 (270)
T ss_dssp ST-TCEEEEEEE---TTCGGGTTTCCCEEEHHHHHHHHHTTCCTTCCTTTCEEEC-SSCBCSTTCCSST-THHHHHHHHH
T ss_pred CC-CCCEEEECC---CCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEC-CCCCCCCCCCCCC-CCCCCHHHHH
T ss_conf 56-652055202---5436666433512439999999976985554523436863-6754368777688-8310556889
Q ss_pred HHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 98989975996468999977880899999999980966715
Q gi|254781175|r 249 AIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYE 289 (296)
Q Consensus 249 lIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~~~~~ 289 (296)
+||||||+|+|++|||+|+||||++|++|+++|++++++|+
T Consensus 230 liGDL~L~G~~i~g~i~a~k~GH~ln~~l~~~l~~~~~~~r 270 (270)
T 1p42_A 230 LIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLTR 270 (270)
T ss_dssp HHHHHGGGSSCEECEEEEESCCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 88789875997179999987882999999999974567409
No 3
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3kc4_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E ...
Probab=73.82 E-value=2.4 Score=21.47 Aligned_cols=37 Identities=30% Similarity=0.663 Sum_probs=22.7
Q ss_pred CCCCCCCCCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEE
Q ss_conf 4111000171107519999997037977899998378887189
Q gi|254781175|r 2 EMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGIL 44 (296)
Q Consensus 2 ~~~~~~~~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~ 44 (296)
+|+.+.....||..++. |-|.+ +++.++|||+++||+
T Consensus 70 nl~~v~~~~~Ti~~~v~----gk~~~--~kv~l~Pap~GtGi~ 106 (167)
T 3i1m_E 70 NMINVALNNGTLQHPVK----GVHTG--SRVFMQPASEGTGII 106 (167)
T ss_dssp SEECCCCBTTBCSSCEE----EEETT--EEEEEECCCCSSSCB
T ss_pred HHHHHHHCCCCCCCCCC----CEEEC--CEEEEEECCCCCCCC
T ss_conf 16876613887576656----41502--389998589998860
No 4
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Probab=67.70 E-value=5.8 Score=19.09 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=45.4
Q ss_pred CCCCCCCCCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 41110001711075199999970379778999983788871899980568888626310998666322013476315886
Q gi|254781175|r 2 EMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVR 81 (296)
Q Consensus 2 ~~~~~~~~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~ 81 (296)
+|+.+...+.||-.++... | ..++|.++|||.++|++= .+.+
T Consensus 65 nl~~v~~~~~Ti~h~v~~k----~--ga~~V~l~Pap~G~Gi~a--------~~~i------------------------ 106 (162)
T 2vqe_E 65 NMVEVPLQNGTIPHEIEVE----F--GASKIVLKPAAPGTGVIA--------GAVP------------------------ 106 (162)
T ss_dssp SEEECCCSTTSCSSCEEEE----E--TTEEEEEEECCTTSCEES--------CHHH------------------------
T ss_pred CEEEEECCCCCCCEEEEEE----E--CCEEEEEEECCCCCCEEC--------CHHH------------------------
T ss_conf 7289934479665630027----5--210799974699987452--------7089------------------------
Q ss_pred EHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 4899899998720005999964887830058289999988544
Q gi|254781175|r 82 TIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERI 124 (296)
Q Consensus 82 TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~a 124 (296)
..-|...||+||...+-|.-=|+ --++.+.++|.+-
T Consensus 107 -----r~il~laGI~D~~~k~~Gs~n~~--NvvkAt~~aL~~~ 142 (162)
T 2vqe_E 107 -----RAILELAGVTDILTKELGSRNPI--NIAYATMEALRQL 142 (162)
T ss_dssp -----HHHHHTTTCCSEEEEEEECCCHH--HHHHHHHHHHHHC
T ss_pred -----HHHHHHCCCCCEEEECCCCCCHH--HHHHHHHHHHHHC
T ss_conf -----99999759261256646789789--9999999999828
No 5
>3ofo_E 30S ribosomal protein S5; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_E* 3iy8_E 2wwl_E 3ofp_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* 2qbj_E* 2qou_E* 2qow_E* ...
Probab=66.54 E-value=4.3 Score=19.86 Aligned_cols=37 Identities=27% Similarity=0.536 Sum_probs=22.6
Q ss_pred CCCCCCCCCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEE
Q ss_conf 4111000171107519999997037977899998378887189
Q gi|254781175|r 2 EMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGIL 44 (296)
Q Consensus 2 ~~~~~~~~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~ 44 (296)
+|+.+.....||-.++... |.+ ++|.++|||.++||+
T Consensus 61 nl~~v~~~~~Ti~~~~~~k----~~~--~~v~l~Pap~G~Gl~ 97 (150)
T 3ofo_E 61 NMINVALNNGTLQHPVKGV----HTG--SRVFMQPASEGTGII 97 (150)
T ss_dssp SEECCCCBTTBCSSCEEEE----ETT--EEEEEECSCCSSSCB
T ss_pred CCEEECCCCCCCCCCCCCE----EEC--CEEEEEECCCCCCCE
T ss_conf 9355024577556445604----301--136887189897853
No 6
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Probab=51.38 E-value=8.6 Score=18.01 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=19.8
Q ss_pred CCCCCCCCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEE
Q ss_conf 111000171107519999997037977899998378887189
Q gi|254781175|r 3 MLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGIL 44 (296)
Q Consensus 3 ~~~~~~~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~ 44 (296)
|+.+....+||-.++.-. | ..+.|.+.|||+++|++
T Consensus 71 l~~V~~~~~Ti~h~v~gk----~--gs~kV~l~Pap~G~Gl~ 106 (150)
T 1pkp_A 71 LIEVPIVGTTIPHEVIGH----F--GAGEIILKPASEGTGVI 106 (150)
T ss_dssp CEECCCBTTBCSSCEEEE----E--TTEEEEEEECCTTCCEE
T ss_pred EEEEECCCCCCCEEEEEE----E--CCEEEEEEECCCCCCEE
T ss_conf 699720489756899999----7--75889998489996668
No 7
>2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=48.00 E-value=10 Score=17.48 Aligned_cols=57 Identities=26% Similarity=0.388 Sum_probs=30.6
Q ss_pred EEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHEEEEEEECCCCCC
Q ss_conf 78999983788871899980568888626310998666322013476315886489989999872000599996488783
Q gi|254781175|r 29 RANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVP 108 (296)
Q Consensus 29 ~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLAAL~glgIDN~~Ieidg~EiP 108 (296)
.++|.++|||+++|++= .+.++ +-|...||.|+.-.+-|.--|
T Consensus 98 s~kV~l~Pap~G~Glia--------~~~vr-----------------------------~il~laGIkDv~~K~~Gst~~ 140 (179)
T 2zkq_e 98 SVPVRLIPAPRGTGIVS--------APVPK-----------------------------KLLMMAGIDDCYTSARGCTAT 140 (179)
T ss_dssp TEEEEEEECCTTCCEEC--------CTTHH-----------------------------HHHHHHTCCCEEEEECSSCCC
T ss_pred CEEEEEECCCCCCCEEC--------CHHHH-----------------------------HHHHHCCCCEEEEECCCCCCC
T ss_conf 68999972799843555--------74999-----------------------------999867945698871358897
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 005828999998854
Q gi|254781175|r 109 IMDGSAKAFVEVIER 123 (296)
Q Consensus 109 IlDGSA~~fv~~i~~ 123 (296)
.+. -++.+.++|.+
T Consensus 141 ~~N-vvkAt~~AL~~ 154 (179)
T 2zkq_e 141 LGN-FAKATFDAISK 154 (179)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH
T ss_conf 889-99999999997
No 8
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=43.45 E-value=14 Score=16.78 Aligned_cols=178 Identities=13% Similarity=0.167 Sum_probs=81.1
Q ss_pred EEEEHHHHHHH---HHHHHHEEEEEEECCCCCCCCCC---CHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCEEEE
Q ss_conf 88648998999---98720005999964887830058---2899999885445544478751477046349981771465
Q gi|254781175|r 79 QVRTIEHLMAA---LYAYGIDNVIIEIDSTEVPIMDG---SAKAFVEVIERIGIKTLTAKRRYLRIIKSVRITSGESWAE 152 (296)
Q Consensus 79 ~V~TVEHLLAA---L~glgIDN~~Ieidg~EiPIlDG---SA~~fv~~i~~aGi~eq~~~r~~~~i~~~v~v~~~~~~i~ 152 (296)
...|-|.+-+| |||-.-. -+.+-|+.+=.||+ -+..+....++-...+ +=..+.+.|++...+..+++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-ef~EkVV~I~RV~KvTKGGR~~s 173 (308)
T 3bbn_E 97 PFESEEEIALAYEELYGAAYS--GESLLGNDVYAMDSKIKKATGFGSKSKKEKIRD-GFEENVVQVRRVTKVVKGGKHMR 173 (308)
T ss_dssp ---------------------------------------------------------CCEEEEEEEECCEEEETTEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCCC--CCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCEEEEEEEEEEEEECCCCCEE
T ss_conf 988889999999986275446--712216761401123441158666432445456-70017775851122405887157
Q ss_pred EECCCCCEEEEEE-EECCC-CCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCCEEEECCCCE--
Q ss_conf 4147663378999-70884-3130002345545778985146503222025788864200032133464564137733--
Q gi|254781175|r 153 FSPHCSMRFEISI-EFKNS-IIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQV-- 228 (296)
Q Consensus 153 ~~P~~~l~i~~~i-df~~~-~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~Ggsl~NaiVi~~~~~i-- 228 (296)
+ +.-+.+ |.++. .+|.-... + ......+.+-.|+ ..|..-.+.+|.++-..+.- +.+..
T Consensus 174 F------rALVVVGNgnG~VG~G~GKA~-E-V~~AIrKA~~~AK--------kNLi~V~~~~~~TIPh~V~g-K~gstkV 236 (308)
T 3bbn_E 174 F------RAIVVVGDKKGQVGVGVGKAK-E-VVSAVQKAAVDAR--------RNIITVPMTKYLTFPHRNEA-DYGAARV 236 (308)
T ss_dssp C------EEEEEEECSSSEEEEEEEECS-S-HHHHHHHHHHTTT--------TSCEECCCCSSSBCSSCEEE-EETTEEE
T ss_pred E------EEEEEEECCCCCEEEEEEECC-C-HHHHHHHHHHHHH--------HCEEEEECCCCCCCCEEEEE-EECCEEE
T ss_conf 8------999999579996867877156-6-8999999999997--------14898857679867857777-8742599
Q ss_pred -EC----CCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf -10----6774789972001148999898997599-646899997788089999999998096
Q gi|254781175|r 229 -MN----HGGLRYSGEEFVRHKTLDAIGDIALAGY-PVIGCYRSCRGSHEINHMALCTLFADK 285 (296)
Q Consensus 229 -~n----~~~LR~~~dE~vRHKiLDlIGDL~L~G~-pi~g~i~a~k~GH~ln~~l~~~l~~~~ 285 (296)
+. -.|++- + - +=.+||.+ +|. .+..++.+.+.-+.+-....+.|-+.+
T Consensus 237 ~LkPAP~GTGIiA-g-~-~vR~ILel------AGIkDv~tKs~GS~N~lNvvKATf~AL~~lr 290 (308)
T 3bbn_E 237 MLRPAAPGTGVIA-G-G-AVRTVLEM------AGVENALGKQLGSNNALNNARATIVAVQTMR 290 (308)
T ss_dssp EEEECCTTCCEEC-C-T-TTHHHHTT------TTCCBEEEEEEECCCTTTTTTHHHHHHHTCC
T ss_pred EEECCCCCCCEEC-C-C-HHHHHHHH------CCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9835998989743-8-0-99999996------7947277776778878889999999998369
No 9
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=42.69 E-value=3.6 Score=20.38 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHE
Q ss_conf 71899980568888626310998666322013476315886489989999872000
Q gi|254781175|r 41 VGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGID 96 (296)
Q Consensus 41 ~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLAAL~glgID 96 (296)
.|++-.|.|..+....|. .++-.....-...+... .++|+|||+|.+.=-..+
T Consensus 17 P~vrvsr~~~~~~Gd~It-~fDlR~~qPN~e~~~~~--~~HTlEHL~At~lRn~~~ 69 (175)
T 1j6w_A 17 PAVRIAKTMLTPKGDNIT-VFDLRFCIPNKEILSPK--GIHTLEHLFAGFMRDHLN 69 (175)
T ss_dssp SEEEEEEEEECTTCCEEE-EEEEECSCTTTCCCCHH--HHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEEECCCCCEEE-EEEEEECCCCHHHCCCC--CHHHHHHHHHHHHHCCCC
T ss_conf 869997568559998799-98887427875447874--124999988988751756
No 10
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=40.71 E-value=17 Score=16.21 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=40.3
Q ss_pred EEECCCCCCEEECCHHHHHHHHHHCC-C-CCCEEEEEEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 80568888626310998666322013-4-7631588648998999987200059999648878300582899999
Q gi|254781175|r 47 CTQSGGITDSLSALWSNVLRTTLSTT-I-GSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVE 119 (296)
Q Consensus 47 R~dl~~~~~~I~A~~~~V~~t~~~T~-L-~~~~~~V~TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~ 119 (296)
-.|.||-...++.-..-+.....+-- + .+.|..-+|-|||+-| ..+||.++.|.++--.. .|-+-..|.+
T Consensus 108 ~iD~PGH~~fi~nmi~g~~~~D~alLVV~A~~G~~~QT~EHl~i~-~~lgi~~iIV~iNK~D~--v~~~~~~~~~ 179 (434)
T 1zun_B 108 IADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIA-SLLGIKHIVVAINKMDL--NGFDERVFES 179 (434)
T ss_dssp EEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHH-HHTTCCEEEEEEECTTT--TTSCHHHHHH
T ss_pred EEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHH-HHCCCCEEEEEEEECCC--CCCCCHHHHH
T ss_conf 997998378899998534367559998605677774437999999-98199869999980147--6654214656
No 11
>3jyv_E 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E
Probab=38.97 E-value=12 Score=17.19 Aligned_cols=15 Identities=47% Similarity=0.977 Sum_probs=9.0
Q ss_pred EEEEEEECCCCCCEE
Q ss_conf 899998378887189
Q gi|254781175|r 30 ANLKLCPAPEGVGIL 44 (296)
Q Consensus 30 ~~i~l~PA~~~~GI~ 44 (296)
+++.++|||.++|++
T Consensus 91 ~~v~l~pap~G~Gl~ 105 (162)
T 3jyv_E 91 VTVRLIPAPRGSGIV 105 (162)
T ss_dssp EEEEEEECCTTCCBC
T ss_pred EEEEEECCCCCCCCC
T ss_conf 699996699985874
No 12
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=36.86 E-value=6 Score=18.97 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=27.0
Q ss_pred EEEEHHHHHHHHHHHHHEE----EEEEEC--CC----C-CCCCCCCHHHHHHHHHHC
Q ss_conf 8864899899998720005----999964--88----7-830058289999988544
Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDN----VIIEID--ST----E-VPIMDGSAKAFVEVIERI 124 (296)
Q Consensus 79 ~V~TVEHLLAAL~glgIDN----~~Ieid--g~----E-iPIlDGSA~~fv~~i~~a 124 (296)
.++|+|||+|.+.--..+. =.|.+. |- = +=..|-|+...+++++++
T Consensus 52 a~HTlEHL~At~lRn~~~~~d~~~iI~~gPMGCrTGFYli~~G~~~~~~i~~l~~~~ 108 (157)
T 1j98_A 52 TIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGETTSAEIVDLLEDT 108 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEEECCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 216999988999871823268875799579765521279886899999999999999
No 13
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genomics; HET: MSE ACO; 1.90A {Bacillus anthracis} PDB: 3n0s_A* 3kzl_A* 3n0m_A* 3e4f_A*
Probab=35.26 E-value=22 Score=15.45 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.6
Q ss_pred EEEHHHHHHHHHHHHH---EEEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 8648998999987200---05999964887830058289999988544
Q gi|254781175|r 80 VRTIEHLMAALYAYGI---DNVIIEIDSTEVPIMDGSAKAFVEVIERI 124 (296)
Q Consensus 80 V~TVEHLLAAL~glgI---DN~~Ieidg~EiPIlDGSA~~fv~~i~~a 124 (296)
..|.+.|..+|.-+|| |.++|.-+=.-+=..+|++..++++|.++
T Consensus 14 p~T~~~l~~~l~~LGI~~gd~v~VHssl~~lg~~~~g~~~ii~aL~~~ 61 (268)
T 3ijw_A 14 PNTIKTITNDLRKLGLKKGMTVIVHSSLSSIGWISGGAVAVVEALMEV 61 (268)
T ss_dssp CBCHHHHHHHHHHHTCCTTCEEEEEECTGGGCCBTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHH
T ss_conf 846999999999819899499999778688398889889999999998
No 14
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=31.74 E-value=11 Score=17.22 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=13.7
Q ss_pred EEEEHHHHHHHHHHHHHEE
Q ss_conf 8864899899998720005
Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDN 97 (296)
Q Consensus 79 ~V~TVEHLLAAL~glgIDN 97 (296)
.++|+|||+|.+.=--.|.
T Consensus 53 alHTlEHL~At~lRn~~d~ 71 (160)
T 1j6x_A 53 SLHSLEHLVAEIIRNHANY 71 (160)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHHHCCCCC
T ss_conf 1469999878888628898
No 15
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=30.84 E-value=11 Score=17.45 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=13.6
Q ss_pred EEEEHHHHHHHHHHHHHEE
Q ss_conf 8864899899998720005
Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDN 97 (296)
Q Consensus 79 ~V~TVEHLLAAL~glgIDN 97 (296)
.++|+|||+|.+.=--.|.
T Consensus 55 ~~HTlEHL~At~lRn~~d~ 73 (166)
T 1vje_A 55 AIHTLEHLLAGYMRDHLEG 73 (166)
T ss_dssp HHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHCCCC
T ss_conf 3039999888888737688
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=24.12 E-value=18 Score=16.06 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=33.3
Q ss_pred CEEEEEEECCCCCCEEECCHHHHHHHHHHCCC---------CCCEEEEEEHHHHHHHHHHHHHEEEEEEEC
Q ss_conf 18999805688886263109986663220134---------763158864899899998720005999964
Q gi|254781175|r 42 GILFKCTQSGGITDSLSALWSNVLRTTLSTTI---------GSSSCQVRTIEHLMAALYAYGIDNVIIEID 103 (296)
Q Consensus 42 GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L---------~~~~~~V~TVEHLLAAL~glgIDN~~Ieid 103 (296)
+..+...|.++ +.+++.++-.+... +..|..-+|-|||+-| ..+||-+++|-++
T Consensus 65 ~~~~~~iD~pG-------h~~~~~~~i~g~~~~d~ailVv~a~~G~~~qT~eHl~l~-~~lgv~~iiV~iN 127 (397)
T 1d2e_A 65 ARHYAHTDCPG-------HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLA-RQIGVEHVVVYVN 127 (397)
T ss_dssp SCEEEEEECSS-------HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHH-HHTTCCCEEEEEE
T ss_pred CEEEEEEECCC-------CHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH-HHCCCCCEEEEEE
T ss_conf 86999998998-------077676664141558899999988999658899999999-9808996899998
No 17
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.00 E-value=33 Score=14.37 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=36.5
Q ss_pred EEEE-EEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 1588-648998999987200059999648878300582899999885445
Q gi|254781175|r 77 SCQV-RTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIG 125 (296)
Q Consensus 77 ~~~V-~TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aG 125 (296)
++.| .-.+.--|+.+|+-.-+.+++|||. |+.+-+-...+++|+++|
T Consensus 62 gi~V~~V~~gspA~~aGL~~GD~Il~Ing~--~v~~~~~~e~v~~i~~~g 109 (126)
T 2yuy_A 62 TIFVKQVKEGGPAFEAGLCTGDRIIKVNGE--SVIGKTYSQVIALIQNSD 109 (126)
T ss_dssp CCCBCCCCSSSHHHHHTCCSSCCCCEETTE--ECSSCCHHHHHHHHHTCT
T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCE--ECCCCCHHHHHHHHHCCC
T ss_conf 889999799997998699889999999999--988999999999987799
No 18
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=21.67 E-value=38 Score=13.94 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=39.4
Q ss_pred CCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCC-CCCCEEEEEEHHHHHHHHHHHHHEEEEEEECC
Q ss_conf 788871899980568888626310998666322013-47631588648998999987200059999648
Q gi|254781175|r 37 APEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTT-IGSSSCQVRTIEHLMAALYAYGIDNVIIEIDS 104 (296)
Q Consensus 37 A~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~-L~~~~~~V~TVEHLLAAL~glgIDN~~Ieidg 104 (296)
...+.-|.| .|.|+-...++....-......+-- +..+|..-+|.|||+. +..+||-+++|-++-
T Consensus 56 ~~~~~~i~i--iD~PGH~dfi~~mi~g~~~~D~ailvVda~Gv~~qT~Ehl~l-~~~lgv~~iIVvINK 121 (370)
T 2elf_A 56 DKEGRNMVF--VDAHSYPKTLKSLITALNISDIAVLCIPPQGLDAHTGECIIA-LDLLGFKHGIIALTR 121 (370)
T ss_dssp CSSSSEEEE--EECTTTTTCHHHHHHHHHTCSEEEEEECTTCCCHHHHHHHHH-HHHTTCCEEEEEECC
T ss_pred CCCCEEEEE--EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHH-HHHCCCCEEEEEEEC
T ss_conf 379969999--989780788899998852267899999367754567999999-997599869999805
No 19
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.94 E-value=40 Score=13.85 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=31.0
Q ss_pred EECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCC
Q ss_conf 4147663378999708843130002345545778985146503222025788864200032
Q gi|254781175|r 153 FSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALG 213 (296)
Q Consensus 153 ~~P~~~l~i~~~idf~~~~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~G 213 (296)
+.-+....|.|.|.-+ +|.+.|+++ .||-.-.|++-|+++||..|
T Consensus 69 V~T~~~t~IeceISeD-----~~~~~FdFn-----------~~FeIhDD~~VLK~Mgl~~g 113 (155)
T 2aze_A 69 VNTSKKTVIDCSISND-----KFEYLFNFD-----------NTFEIHDDIEVLKRMGMACG 113 (155)
T ss_dssp EEEESSCCEEEEECTT-----SSEEEEEES-----------SCEEEEEHHHHHHHTTTTTT
T ss_pred EECCCCCEEEEEEECC-----CCEEEEECC-----------CCEEEECHHHHHHHHHHHHC
T ss_conf 9669998899897066-----326876089-----------97576644999998356527
Done!