HHSEARCH alignment of GI: 254781175 and SCOP domain: d1p42a2

Alignment
>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=384.17  Aligned_cols=147  Identities=35%  Similarity=0.519  Sum_probs=139.2

Q ss_pred             CEEEECCCEEEEECCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCC
Q ss_conf             14770463499817714654147663378999708843130002345545778985146503222025788864200032
Q gi|254781175|r  134 RYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALG  213 (296)
Q Consensus       134 ~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf~~~~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~G  213 (296)
                      .|++|++||+|+++++|+.+.|+++|+|+|+|||++ +||+|++++.   ++|.+||||||||||++|+++|+++||+||
T Consensus         1 ~~~~I~k~I~v~~g~~~i~i~P~~~~~It~~Idf~~-~Ig~Q~~~~~---~~f~~eIa~ARTFgf~~eie~L~~~Gl~~G   76 (147)
T d1p42a2           1 DYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFV---EGNEEEIVLARTFAFDWEIEHIKKVGLGKG   76 (147)
T ss_dssp             CCEECCSCEEEEETTEEEEEECCSSCEEEEEEECSS-TTCEEEEEEE---TTCGGGTTTCCCEEEHHHHHHHHHTTCCTT
T ss_pred             CEEEECEEEEEEECCEEEEEECCCCCEEEEEEECCC-CCCCEEEEEE---CCCHHHHHCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             959987289999899999998589968999997378-7762256760---577888622025479998999865571277


Q ss_pred             CCCCCCEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             1334645641377331067747899720011489998989975996468999977880899999999980966
Q gi|254781175|r  214 ASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKD  286 (296)
Q Consensus       214 gsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKiLDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~~  286 (296)
                      |||+||+|+++ ++++|++||||+ ||||||||||+||||||+|+|++|||+|+||||.+|++|+++|++++.
T Consensus        77 gsl~naiVi~~-~~~~n~~~LR~~-~E~vRHKiLD~iGDl~L~G~pi~G~i~a~k~GH~ln~~l~~~l~~~~~  147 (147)
T d1p42a2          77 GSLKNTLVLGK-DKVYNPEGLRYE-NEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK  147 (147)
T ss_dssp             CCTTTCEEECS-SCBCSTTCCSST-THHHHHHHHHHHHHHGGGSSCEECEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCEEECC-CCEECCCCCCCC-CCCCHHHHHHHCCCHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             36012325346-310024465442-201236665540637555997389999984777999999999985159


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
domain: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
species: Aquifex aeolicus [TaxId: 63363]