Query         gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 296
No_of_seqs    133 out of 1538
Neff          5.4 
Searched_HMMs 13730
Date          Wed Jun  1 11:43:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781175.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1p42a2 d.14.1.7 (A:128-280) U 100.0       0       0  384.2  13.9  147  134-286     1-147 (147)
  2 d1p42a1 d.14.1.7 (A:2-127) UDP 100.0       0       0  329.9   7.2  118    9-131     2-119 (120)
  3 d2bv3a3 d.14.1.1 (A:479-599) E  88.2     0.8 5.9E-05   22.9   7.0   95    9-120     5-107 (121)
  4 d1pkpa1 d.14.1.1 (A:78-148) Ri  68.2     1.7 0.00012   21.0   2.7   16   29-44     14-29  (71)
  5 d2uube1 d.14.1.1 (E:74-154) Ri  63.7     2.3 0.00017   20.1   2.7   17   29-45     13-29  (81)
  6 d2qale1 d.14.1.1 (E:78-158) Ri  60.4     1.8 0.00013   20.7   1.7   17   29-45     13-29  (81)
  7 d1j6wa_ d.185.1.2 (A:) Autoind  45.9     1.7 0.00012   20.9  -0.4   53   41-96     15-67  (161)
  8 d1j6xa_ d.185.1.2 (A:) Autoind  34.3     5.7 0.00041   17.6   0.8   19   79-97     53-71  (151)
  9 d1j98a_ d.185.1.2 (A:) Autoind  30.8       5 0.00037   18.0   0.1   46   79-124    49-105 (154)
 10 d2azea1 e.63.1.1 (A:199-346) T  30.3      15  0.0011   14.9   3.2   46  152-213    65-110 (148)
 11 d1vjea_ d.185.1.2 (A:) Autoind  30.0     6.4 0.00047   17.3   0.5   45   79-124    48-99  (149)

No 1  
>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=384.17  Aligned_cols=147  Identities=35%  Similarity=0.519  Sum_probs=139.2

Q ss_pred             CEEEECCCEEEEECCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCC
Q ss_conf             14770463499817714654147663378999708843130002345545778985146503222025788864200032
Q gi|254781175|r  134 RYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALG  213 (296)
Q Consensus       134 ~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf~~~~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~G  213 (296)
                      .|++|++||+|+++++|+.+.|+++|+|+|+|||++ +||+|++++.   ++|.+||||||||||++|+++|+++||+||
T Consensus         1 ~~~~I~k~I~v~~g~~~i~i~P~~~~~It~~Idf~~-~Ig~Q~~~~~---~~f~~eIa~ARTFgf~~eie~L~~~Gl~~G   76 (147)
T d1p42a2           1 DYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFV---EGNEEEIVLARTFAFDWEIEHIKKVGLGKG   76 (147)
T ss_dssp             CCEECCSCEEEEETTEEEEEECCSSCEEEEEEECSS-TTCEEEEEEE---TTCGGGTTTCCCEEEHHHHHHHHHTTCCTT
T ss_pred             CEEEECEEEEEEECCEEEEEECCCCCEEEEEEECCC-CCCCEEEEEE---CCCHHHHHCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             959987289999899999998589968999997378-7762256760---577888622025479998999865571277


Q ss_pred             CCCCCCEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             1334645641377331067747899720011489998989975996468999977880899999999980966
Q gi|254781175|r  214 ASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKD  286 (296)
Q Consensus       214 gsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKiLDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~~  286 (296)
                      |||+||+|+++ ++++|++||||+ ||||||||||+||||||+|+|++|||+|+||||.+|++|+++|++++.
T Consensus        77 gsl~naiVi~~-~~~~n~~~LR~~-~E~vRHKiLD~iGDl~L~G~pi~G~i~a~k~GH~ln~~l~~~l~~~~~  147 (147)
T d1p42a2          77 GSLKNTLVLGK-DKVYNPEGLRYE-NEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK  147 (147)
T ss_dssp             CCTTTCEEECS-SCBCSTTCCSST-THHHHHHHHHHHHHHGGGSSCEECEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCEEECC-CCEECCCCCCCC-CCCCHHHHHHHCCCHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf             36012325346-310024465442-201236665540637555997389999984777999999999985159


No 2  
>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=329.92  Aligned_cols=118  Identities=32%  Similarity=0.528  Sum_probs=113.5

Q ss_pred             CCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHH
Q ss_conf             17110751999999703797789999837888718999805688886263109986663220134763158864899899
Q gi|254781175|r    9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMA   88 (296)
Q Consensus         9 ~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLA   88 (296)
                      |||||+++++++|+|||||++++|+++||++|+||+|+|.|+     .|+|+++||.+|.+||+|++++.+|+|||||||
T Consensus         2 ~Q~Ti~~~v~~~GiGLHsG~~~~v~l~PA~~~~GI~F~r~d~-----~I~a~~~~v~~t~~~T~l~~~~~~V~TvEHLla   76 (120)
T d1p42a1           2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGV-----YIPARHEFVVHTNHSTDLGFKGQRIKTVEHILS   76 (120)
T ss_dssp             EEEEESSCEEEEEECTTTCCEEEEEEEECCTTCCEEEEETTE-----EEESSGGGEEECSSSCEEEETTEEEBCCHHHHH
T ss_pred             CCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCC-----CCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf             874668767999998037958899999379994799984775-----676455442203344442158449997699788


Q ss_pred             HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9987200059999648878300582899999885445544478
Q gi|254781175|r   89 ALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTA  131 (296)
Q Consensus        89 AL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~  131 (296)
                      ||+||||||++||+||+|+|||||||++|+++|+++|+++|.+
T Consensus        77 Al~glgIDN~~Ieldg~EvPIlDGSa~~fv~~i~~agi~q~~~  119 (120)
T d1p42a1          77 VLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNRE  119 (120)
T ss_dssp             HHHHTTCCSEEEEEESSBCCCTTSSSHHHHHHHHTTEEEEEEE
T ss_pred             HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCHHHCCC
T ss_conf             8984472349999589938736786699999999857544156


No 3  
>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]}
Probab=88.17  E-value=0.8  Score=22.94  Aligned_cols=95  Identities=18%  Similarity=0.337  Sum_probs=65.1

Q ss_pred             CCHHHCCEEEEEEEEECC----CC----EEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEE
Q ss_conf             171107519999997037----97----7899998378887189998056888862631099866632201347631588
Q gi|254781175|r    9 LQHTIADSITITGIGIHS----GK----RANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQV   80 (296)
Q Consensus         9 ~Q~Ti~~~v~~~GiGLHs----G~----~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V   80 (296)
                      |+-||.++++.++  .|-    |+    .+++++.|.+.++|+.|.- .+.+  ..||..+-..+.....-.+..|.   
T Consensus         5 YREtI~~~~~~~~--~~~rq~gg~~~~a~V~l~veP~~~g~g~~f~~-~v~~--~~ip~~~~~ave~g~~~a~~~G~---   76 (121)
T d2bv3a3           5 YRETITKPVDVEG--KFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVN-AIVG--GVIPKEYIPAVQKGIEEAMQSGP---   76 (121)
T ss_dssp             CEEECSSCEEEEE--EEEEECSSSEEEEEEEEEEEECSTTCCEEEEE-CCCT--TSSCGGGHHHHHHHHHHHTTSCS---
T ss_pred             CEECCCCCEEEEE--EEEEECCCCCEEEEEEEEEEEEECCCCCEEEE-EECC--CCCCHHHHHHHHHHHHHHHHHCC---
T ss_conf             4462688489999--99986189984689999999713799848964-3138--97998898999999999997567---


Q ss_pred             EEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             6489989999872000599996488783005828999998
Q gi|254781175|r   81 RTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV  120 (296)
Q Consensus        81 ~TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~  120 (296)
                               |.|+-+.|+.|.|.+.+.--.|=|...|--+
T Consensus        77 ---------l~G~pv~dv~v~l~~g~~h~~dSs~~af~~A  107 (121)
T d2bv3a3          77 ---------LIGFPVVDIKVTLYDGSYHEVDSSEMAFKIA  107 (121)
T ss_dssp             ---------SSSCCBCSEEEEEEEEECCTTTCCHHHHHHH
T ss_pred             ---------CCCCEEEEEEEEEEEEECCCCCCCHHHHHHH
T ss_conf             ---------6998769899999978834899999999999


No 4  
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=68.22  E-value=1.7  Score=20.97  Aligned_cols=16  Identities=38%  Similarity=0.746  Sum_probs=14.3

Q ss_pred             EEEEEEEECCCCCCEE
Q ss_conf             7899998378887189
Q gi|254781175|r   29 RANLKLCPAPEGVGIL   44 (296)
Q Consensus        29 ~~~i~l~PA~~~~GI~   44 (296)
                      .++|.++|||+++||+
T Consensus        14 s~~V~l~PAp~GtGli   29 (71)
T d1pkpa1          14 AGEIILKPASEGTGVI   29 (71)
T ss_dssp             TEEEEEEECCTTCCEE
T ss_pred             EEEEEEEECCCCCCCC
T ss_conf             0999999789998531


No 5  
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=63.72  E-value=2.3  Score=20.10  Aligned_cols=17  Identities=29%  Similarity=0.593  Sum_probs=14.6

Q ss_pred             EEEEEEEECCCCCCEEE
Q ss_conf             78999983788871899
Q gi|254781175|r   29 RANLKLCPAPEGVGILF   45 (296)
Q Consensus        29 ~~~i~l~PA~~~~GI~F   45 (296)
                      .++|.++|||+++||+=
T Consensus        13 s~kV~l~PAp~GtGlia   29 (81)
T d2uube1          13 ASKIVLKPAAPGTGVIA   29 (81)
T ss_dssp             TEEEEEEECCTTCCEEC
T ss_pred             CEEEEEEECCCCCCCCC
T ss_conf             38999997899986124


No 6  
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=60.42  E-value=1.8  Score=20.73  Aligned_cols=17  Identities=35%  Similarity=0.608  Sum_probs=14.6

Q ss_pred             EEEEEEEECCCCCCEEE
Q ss_conf             78999983788871899
Q gi|254781175|r   29 RANLKLCPAPEGVGILF   45 (296)
Q Consensus        29 ~~~i~l~PA~~~~GI~F   45 (296)
                      .++|.++|||+++||+=
T Consensus        13 s~kV~l~PAp~GtGlia   29 (81)
T d2qale1          13 GSRVFMQPASEGTGIIA   29 (81)
T ss_dssp             TEEEEBCBCCTTSCEEC
T ss_pred             CEEEEEEECCCCCCCCC
T ss_conf             69999997899984134


No 7  
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]}
Probab=45.95  E-value=1.7  Score=20.90  Aligned_cols=53  Identities=13%  Similarity=0.162  Sum_probs=25.3

Q ss_pred             CCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHE
Q ss_conf             71899980568888626310998666322013476315886489989999872000
Q gi|254781175|r   41 VGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGID   96 (296)
Q Consensus        41 ~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLAAL~glgID   96 (296)
                      .|++-.|.+..+....| ..++-.....-...+..  ..++|+|||+|-+.=-..+
T Consensus        15 P~Vrvs~~~~~~~Gd~I-t~fDlR~~qPN~e~m~~--~~lHTlEHL~At~lRnh~~   67 (161)
T d1j6wa_          15 PAVRIAKTMLTPKGDNI-TVFDLRFCIPNKEILSP--KGIHTLEHLFAGFMRDHLN   67 (161)
T ss_dssp             SEEEEEEEEECTTCCEE-EEEEEECSCTTTCCCCH--HHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEEEECCCCCEE-EEEEEEECCCCHHHCCC--CCHHHHHHHHHHHHHHCCC
T ss_conf             87999856845999989-99888633888566787--3035999988888650656


No 8  
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=34.30  E-value=5.7  Score=17.65  Aligned_cols=19  Identities=21%  Similarity=0.408  Sum_probs=12.7

Q ss_pred             EEEEHHHHHHHHHHHHHEE
Q ss_conf             8864899899998720005
Q gi|254781175|r   79 QVRTIEHLMAALYAYGIDN   97 (296)
Q Consensus        79 ~V~TVEHLLAAL~glgIDN   97 (296)
                      .++|+|||+|-+.=-..|.
T Consensus        53 ~lHTlEHL~At~lRn~~d~   71 (151)
T d1j6xa_          53 SLHSLEHLVAEIIRNHANY   71 (151)
T ss_dssp             HHHHHHHHHHHHHHHHCSC
T ss_pred             CHHHHHHHHHHHHHHCCCC
T ss_conf             0469999888888618798


No 9  
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=30.80  E-value=5  Score=17.98  Aligned_cols=46  Identities=24%  Similarity=0.337  Sum_probs=25.3

Q ss_pred             EEEEHHHHHHHHHHHHHEE----EEEEEC--CC----C-CCCCCCCHHHHHHHHHHC
Q ss_conf             8864899899998720005----999964--88----7-830058289999988544
Q gi|254781175|r   79 QVRTIEHLMAALYAYGIDN----VIIEID--ST----E-VPIMDGSAKAFVEVIERI  124 (296)
Q Consensus        79 ~V~TVEHLLAAL~glgIDN----~~Ieid--g~----E-iPIlDGSA~~fv~~i~~a  124 (296)
                      .++|+|||+|-+.--..+.    =.|.+.  |-    = +=+.|-++...+++++++
T Consensus        49 ~lHTlEHL~At~lRn~~~~~d~~~iI~~gPMGCrTGFYl~~~g~~~~~~i~~l~~~~  105 (154)
T d1j98a_          49 TIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGETTSAEIVDLLEDT  105 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEEECCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             137999988999872824368852899579765630379887898999999999999


No 10 
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.30  E-value=15  Score=14.94  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=32.2

Q ss_pred             EEECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCC
Q ss_conf             54147663378999708843130002345545778985146503222025788864200032
Q gi|254781175|r  152 EFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALG  213 (296)
Q Consensus       152 ~~~P~~~l~i~~~idf~~~~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~G  213 (296)
                      .+.-+....|.|.|.-+     +|.|.|+++.           ||-.-.|++-|+++||..|
T Consensus        65 iV~T~~~t~IdceISeD-----k~~y~F~Fn~-----------tFeIhDD~~VLK~Mgl~~g  110 (148)
T d2azea1          65 IVNTSKKTVIDCSISND-----KFEYLFNFDN-----------TFEIHDDIEVLKRMGMACG  110 (148)
T ss_dssp             EEEEESSCCEEEEECTT-----SSEEEEEESS-----------CEEEEEHHHHHHHTTTTTT
T ss_pred             EEECCCCCEEEEEECCC-----CEEEEECCCC-----------CEEEECHHHHHHHHHHHHC
T ss_conf             99659997889897165-----1067743899-----------7577640999999788747


No 11 
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=29.98  E-value=6.4  Score=17.30  Aligned_cols=45  Identities=16%  Similarity=0.352  Sum_probs=23.5

Q ss_pred             EEEEHHHHHHHHHHHHHEEEEEEEC--CC----C-CCCCCCCHHHHHHHHHHC
Q ss_conf             8864899899998720005999964--88----7-830058289999988544
Q gi|254781175|r   79 QVRTIEHLMAALYAYGIDNVIIEID--ST----E-VPIMDGSAKAFVEVIERI  124 (296)
Q Consensus        79 ~V~TVEHLLAAL~glgIDN~~Ieid--g~----E-iPIlDGSA~~fv~~i~~a  124 (296)
                      .++|+|||+|-+.---.|. .|.+.  |-    = +=+-|-|+...+++++++
T Consensus        48 ~~HTlEHL~A~~lRn~~~~-iId~sPMGCrTGFYl~~~g~~~~~~i~~~~~~~   99 (149)
T d1vjea_          48 AIHTLEHLLAGYMRDHLEG-VVDVSPMGCRTGMYMAVIGEPDEQGVMKAFEAA   99 (149)
T ss_dssp             HHHHHHHHHHHHHHHHCTT-EEEEEECTTSSEEEEEEESSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             1249999889888737788-488878765620279885799999999999999


Done!