Query gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 296 No_of_seqs 133 out of 1538 Neff 5.4 Searched_HMMs 13730 Date Wed Jun 1 11:43:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781175.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1p42a2 d.14.1.7 (A:128-280) U 100.0 0 0 384.2 13.9 147 134-286 1-147 (147) 2 d1p42a1 d.14.1.7 (A:2-127) UDP 100.0 0 0 329.9 7.2 118 9-131 2-119 (120) 3 d2bv3a3 d.14.1.1 (A:479-599) E 88.2 0.8 5.9E-05 22.9 7.0 95 9-120 5-107 (121) 4 d1pkpa1 d.14.1.1 (A:78-148) Ri 68.2 1.7 0.00012 21.0 2.7 16 29-44 14-29 (71) 5 d2uube1 d.14.1.1 (E:74-154) Ri 63.7 2.3 0.00017 20.1 2.7 17 29-45 13-29 (81) 6 d2qale1 d.14.1.1 (E:78-158) Ri 60.4 1.8 0.00013 20.7 1.7 17 29-45 13-29 (81) 7 d1j6wa_ d.185.1.2 (A:) Autoind 45.9 1.7 0.00012 20.9 -0.4 53 41-96 15-67 (161) 8 d1j6xa_ d.185.1.2 (A:) Autoind 34.3 5.7 0.00041 17.6 0.8 19 79-97 53-71 (151) 9 d1j98a_ d.185.1.2 (A:) Autoind 30.8 5 0.00037 18.0 0.1 46 79-124 49-105 (154) 10 d2azea1 e.63.1.1 (A:199-346) T 30.3 15 0.0011 14.9 3.2 46 152-213 65-110 (148) 11 d1vjea_ d.185.1.2 (A:) Autoind 30.0 6.4 0.00047 17.3 0.5 45 79-124 48-99 (149) No 1 >d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=0 Score=384.17 Aligned_cols=147 Identities=35% Similarity=0.519 Sum_probs=139.2 Q ss_pred CEEEECCCEEEEECCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCC Q ss_conf 14770463499817714654147663378999708843130002345545778985146503222025788864200032 Q gi|254781175|r 134 RYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALG 213 (296) Q Consensus 134 ~~~~i~~~v~v~~~~~~i~~~P~~~l~i~~~idf~~~~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~G 213 (296) .|++|++||+|+++++|+.+.|+++|+|+|+|||++ +||+|++++. ++|.+||||||||||++|+++|+++||+|| T Consensus 1 ~~~~I~k~I~v~~g~~~i~i~P~~~~~It~~Idf~~-~Ig~Q~~~~~---~~f~~eIa~ARTFgf~~eie~L~~~Gl~~G 76 (147) T d1p42a2 1 DYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFV---EGNEEEIVLARTFAFDWEIEHIKKVGLGKG 76 (147) T ss_dssp CCEECCSCEEEEETTEEEEEECCSSCEEEEEEECSS-TTCEEEEEEE---TTCGGGTTTCCCEEEHHHHHHHHHTTCCTT T ss_pred CEEEECEEEEEEECCEEEEEECCCCCEEEEEEECCC-CCCCEEEEEE---CCCHHHHHCHHHHHHHHHHHHHHCCCCCCC T ss_conf 959987289999899999998589968999997378-7762256760---577888622025479998999865571277 Q ss_pred CCCCCCEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCC Q ss_conf 1334645641377331067747899720011489998989975996468999977880899999999980966 Q gi|254781175|r 214 ASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKD 286 (296) Q Consensus 214 gsl~NaiVi~~~~~i~n~~~LR~~~dE~vRHKiLDlIGDL~L~G~pi~g~i~a~k~GH~ln~~l~~~l~~~~~ 286 (296) |||+||+|+++ ++++|++||||+ ||||||||||+||||||+|+|++|||+|+||||.+|++|+++|++++. T Consensus 77 gsl~naiVi~~-~~~~n~~~LR~~-~E~vRHKiLD~iGDl~L~G~pi~G~i~a~k~GH~ln~~l~~~l~~~~~ 147 (147) T d1p42a2 77 GSLKNTLVLGK-DKVYNPEGLRYE-NEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQK 147 (147) T ss_dssp CCTTTCEEECS-SCBCSTTCCSST-THHHHHHHHHHHHHHGGGSSCEECEEEEESCCHHHHHHHHHHHHHTTC T ss_pred CCCCCCEEECC-CCEECCCCCCCC-CCCCHHHHHHHCCCHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCC T ss_conf 36012325346-310024465442-201236665540637555997389999984777999999999985159 No 2 >d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=0 Score=329.92 Aligned_cols=118 Identities=32% Similarity=0.528 Sum_probs=113.5 Q ss_pred CCHHHCCEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHH Q ss_conf 17110751999999703797789999837888718999805688886263109986663220134763158864899899 Q gi|254781175|r 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMA 88 (296) Q Consensus 9 ~Q~Ti~~~v~~~GiGLHsG~~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLA 88 (296) |||||+++++++|+|||||++++|+++||++|+||+|+|.|+ .|+|+++||.+|.+||+|++++.+|+||||||| T Consensus 2 ~Q~Ti~~~v~~~GiGLHsG~~~~v~l~PA~~~~GI~F~r~d~-----~I~a~~~~v~~t~~~T~l~~~~~~V~TvEHLla 76 (120) T d1p42a1 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGV-----YIPARHEFVVHTNHSTDLGFKGQRIKTVEHILS 76 (120) T ss_dssp EEEEESSCEEEEEECTTTCCEEEEEEEECCTTCCEEEEETTE-----EEESSGGGEEECSSSCEEEETTEEEBCCHHHHH T ss_pred CCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCC-----CCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHH T ss_conf 874668767999998037958899999379994799984775-----676455442203344442158449997699788 Q ss_pred HHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC Q ss_conf 9987200059999648878300582899999885445544478 Q gi|254781175|r 89 ALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTA 131 (296) Q Consensus 89 AL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~i~~aGi~eq~~ 131 (296) ||+||||||++||+||+|+|||||||++|+++|+++|+++|.+ T Consensus 77 Al~glgIDN~~Ieldg~EvPIlDGSa~~fv~~i~~agi~q~~~ 119 (120) T d1p42a1 77 VLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNRE 119 (120) T ss_dssp HHHHTTCCSEEEEEESSBCCCTTSSSHHHHHHHHTTEEEEEEE T ss_pred HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCHHHCCC T ss_conf 8984472349999589938736786699999999857544156 No 3 >d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]} Probab=88.17 E-value=0.8 Score=22.94 Aligned_cols=95 Identities=18% Similarity=0.337 Sum_probs=65.1 Q ss_pred CCHHHCCEEEEEEEEECC----CC----EEEEEEEECCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEE Q ss_conf 171107519999997037----97----7899998378887189998056888862631099866632201347631588 Q gi|254781175|r 9 LQHTIADSITITGIGIHS----GK----RANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQV 80 (296) Q Consensus 9 ~Q~Ti~~~v~~~GiGLHs----G~----~~~i~l~PA~~~~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V 80 (296) |+-||.++++.++ .|- |+ .+++++.|.+.++|+.|.- .+.+ ..||..+-..+.....-.+..|. T Consensus 5 YREtI~~~~~~~~--~~~rq~gg~~~~a~V~l~veP~~~g~g~~f~~-~v~~--~~ip~~~~~ave~g~~~a~~~G~--- 76 (121) T d2bv3a3 5 YRETITKPVDVEG--KFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVN-AIVG--GVIPKEYIPAVQKGIEEAMQSGP--- 76 (121) T ss_dssp CEEECSSCEEEEE--EEEEECSSSEEEEEEEEEEEECSTTCCEEEEE-CCCT--TSSCGGGHHHHHHHHHHHTTSCS--- T ss_pred CEECCCCCEEEEE--EEEEECCCCCEEEEEEEEEEEEECCCCCEEEE-EECC--CCCCHHHHHHHHHHHHHHHHHCC--- T ss_conf 4462688489999--99986189984689999999713799848964-3138--97998898999999999997567--- Q ss_pred EEHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHH Q ss_conf 6489989999872000599996488783005828999998 Q gi|254781175|r 81 RTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV 120 (296) Q Consensus 81 ~TVEHLLAAL~glgIDN~~Ieidg~EiPIlDGSA~~fv~~ 120 (296) |.|+-+.|+.|.|.+.+.--.|=|...|--+ T Consensus 77 ---------l~G~pv~dv~v~l~~g~~h~~dSs~~af~~A 107 (121) T d2bv3a3 77 ---------LIGFPVVDIKVTLYDGSYHEVDSSEMAFKIA 107 (121) T ss_dssp ---------SSSCCBCSEEEEEEEEECCTTTCCHHHHHHH T ss_pred ---------CCCCEEEEEEEEEEEEECCCCCCCHHHHHHH T ss_conf ---------6998769899999978834899999999999 No 4 >d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Probab=68.22 E-value=1.7 Score=20.97 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=14.3 Q ss_pred EEEEEEEECCCCCCEE Q ss_conf 7899998378887189 Q gi|254781175|r 29 RANLKLCPAPEGVGIL 44 (296) Q Consensus 29 ~~~i~l~PA~~~~GI~ 44 (296) .++|.++|||+++||+ T Consensus 14 s~~V~l~PAp~GtGli 29 (71) T d1pkpa1 14 AGEIILKPASEGTGVI 29 (71) T ss_dssp TEEEEEEECCTTCCEE T ss_pred EEEEEEEECCCCCCCC T ss_conf 0999999789998531 No 5 >d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=63.72 E-value=2.3 Score=20.10 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.6 Q ss_pred EEEEEEEECCCCCCEEE Q ss_conf 78999983788871899 Q gi|254781175|r 29 RANLKLCPAPEGVGILF 45 (296) Q Consensus 29 ~~~i~l~PA~~~~GI~F 45 (296) .++|.++|||+++||+= T Consensus 13 s~kV~l~PAp~GtGlia 29 (81) T d2uube1 13 ASKIVLKPAAPGTGVIA 29 (81) T ss_dssp TEEEEEEECCTTCCEEC T ss_pred CEEEEEEECCCCCCCCC T ss_conf 38999997899986124 No 6 >d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=60.42 E-value=1.8 Score=20.73 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.6 Q ss_pred EEEEEEEECCCCCCEEE Q ss_conf 78999983788871899 Q gi|254781175|r 29 RANLKLCPAPEGVGILF 45 (296) Q Consensus 29 ~~~i~l~PA~~~~GI~F 45 (296) .++|.++|||+++||+= T Consensus 13 s~kV~l~PAp~GtGlia 29 (81) T d2qale1 13 GSRVFMQPASEGTGIIA 29 (81) T ss_dssp TEEEEBCBCCTTSCEEC T ss_pred CEEEEEEECCCCCCCCC T ss_conf 69999997899984134 No 7 >d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]} Probab=45.95 E-value=1.7 Score=20.90 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=25.3 Q ss_pred CCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHE Q ss_conf 71899980568888626310998666322013476315886489989999872000 Q gi|254781175|r 41 VGILFKCTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGID 96 (296) Q Consensus 41 ~GI~F~R~dl~~~~~~I~A~~~~V~~t~~~T~L~~~~~~V~TVEHLLAAL~glgID 96 (296) .|++-.|.+..+....| ..++-.....-...+.. ..++|+|||+|-+.=-..+ T Consensus 15 P~Vrvs~~~~~~~Gd~I-t~fDlR~~qPN~e~m~~--~~lHTlEHL~At~lRnh~~ 67 (161) T d1j6wa_ 15 PAVRIAKTMLTPKGDNI-TVFDLRFCIPNKEILSP--KGIHTLEHLFAGFMRDHLN 67 (161) T ss_dssp SEEEEEEEEECTTCCEE-EEEEEECSCTTTCCCCH--HHHHHHHHHHHHHHHHHHC T ss_pred CEEEEEEEEECCCCCEE-EEEEEEECCCCHHHCCC--CCHHHHHHHHHHHHHHCCC T ss_conf 87999856845999989-99888633888566787--3035999988888650656 No 8 >d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]} Probab=34.30 E-value=5.7 Score=17.65 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=12.7 Q ss_pred EEEEHHHHHHHHHHHHHEE Q ss_conf 8864899899998720005 Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDN 97 (296) Q Consensus 79 ~V~TVEHLLAAL~glgIDN 97 (296) .++|+|||+|-+.=-..|. T Consensus 53 ~lHTlEHL~At~lRn~~d~ 71 (151) T d1j6xa_ 53 SLHSLEHLVAEIIRNHANY 71 (151) T ss_dssp HHHHHHHHHHHHHHHHCSC T ss_pred CHHHHHHHHHHHHHHCCCC T ss_conf 0469999888888618798 No 9 >d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]} Probab=30.80 E-value=5 Score=17.98 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=25.3 Q ss_pred EEEEHHHHHHHHHHHHHEE----EEEEEC--CC----C-CCCCCCCHHHHHHHHHHC Q ss_conf 8864899899998720005----999964--88----7-830058289999988544 Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDN----VIIEID--ST----E-VPIMDGSAKAFVEVIERI 124 (296) Q Consensus 79 ~V~TVEHLLAAL~glgIDN----~~Ieid--g~----E-iPIlDGSA~~fv~~i~~a 124 (296) .++|+|||+|-+.--..+. =.|.+. |- = +=+.|-++...+++++++ T Consensus 49 ~lHTlEHL~At~lRn~~~~~d~~~iI~~gPMGCrTGFYl~~~g~~~~~~i~~l~~~~ 105 (154) T d1j98a_ 49 TIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGETTSAEIVDLLEDT 105 (154) T ss_dssp HHHHHHHHHHHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEEECCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 137999988999872824368852899579765630379887898999999999999 No 10 >d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=30.30 E-value=15 Score=14.94 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=32.2 Q ss_pred EEECCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCC Q ss_conf 54147663378999708843130002345545778985146503222025788864200032 Q gi|254781175|r 152 EFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAGCALG 213 (296) Q Consensus 152 ~~~P~~~l~i~~~idf~~~~Ig~Q~~~~~~~~~~f~~eIa~ARTF~~~~eie~L~~~Gl~~G 213 (296) .+.-+....|.|.|.-+ +|.|.|+++. ||-.-.|++-|+++||..| T Consensus 65 iV~T~~~t~IdceISeD-----k~~y~F~Fn~-----------tFeIhDD~~VLK~Mgl~~g 110 (148) T d2azea1 65 IVNTSKKTVIDCSISND-----KFEYLFNFDN-----------TFEIHDDIEVLKRMGMACG 110 (148) T ss_dssp EEEEESSCCEEEEECTT-----SSEEEEEESS-----------CEEEEEHHHHHHHTTTTTT T ss_pred EEECCCCCEEEEEECCC-----CEEEEECCCC-----------CEEEECHHHHHHHHHHHHC T ss_conf 99659997889897165-----1067743899-----------7577640999999788747 No 11 >d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]} Probab=29.98 E-value=6.4 Score=17.30 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=23.5 Q ss_pred EEEEHHHHHHHHHHHHHEEEEEEEC--CC----C-CCCCCCCHHHHHHHHHHC Q ss_conf 8864899899998720005999964--88----7-830058289999988544 Q gi|254781175|r 79 QVRTIEHLMAALYAYGIDNVIIEID--ST----E-VPIMDGSAKAFVEVIERI 124 (296) Q Consensus 79 ~V~TVEHLLAAL~glgIDN~~Ieid--g~----E-iPIlDGSA~~fv~~i~~a 124 (296) .++|+|||+|-+.---.|. .|.+. |- = +=+-|-|+...+++++++ T Consensus 48 ~~HTlEHL~A~~lRn~~~~-iId~sPMGCrTGFYl~~~g~~~~~~i~~~~~~~ 99 (149) T d1vjea_ 48 AIHTLEHLLAGYMRDHLEG-VVDVSPMGCRTGMYMAVIGEPDEQGVMKAFEAA 99 (149) T ss_dssp HHHHHHHHHHHHHHHHCTT-EEEEEECTTSSEEEEEEESSCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 1249999889888737788-488878765620279885799999999999999 Done!