RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus
str. psy62]
         (296 letters)



>gnl|CDD|183882 PRK13186, lpxC, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine
           deacetylase; Reviewed.
          Length = 295

 Score =  390 bits (1004), Expect = e-109
 Identities = 131/282 (46%), Positives = 183/282 (64%), Gaps = 3/282 (1%)

Query: 10  QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
           Q T+   +T TG+G+HSGK+  L L PAP   GI+F+ T      + + A   NV  T L
Sbjct: 4   QRTLKKPVTATGVGLHSGKKVTLTLRPAPANTGIVFRRTDLPPPVE-IPARAENVGDTRL 62

Query: 70  STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
            TT+G+   +V T+EHLMAAL   GIDN +IE+D  EVPIMDGSA  FV +I+  GI   
Sbjct: 63  CTTLGNGGVRVSTVEHLMAALAGLGIDNALIEVDGPEVPIMDGSAAPFVFLIQSAGIVEQ 122

Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNE 189
            A ++++RI K VR+  G+ WAE  P+   R + +I+F +  IG Q ++ D +   F  E
Sbjct: 123 NAPKKFIRIKKPVRVEDGDKWAELLPYDGFRLDFTIDFDHPAIGRQSYSLDFSPESFVRE 182

Query: 190 IYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDA 249
           I  ARTFGF++DVE  R AG ALG SL+N++V+ +DD+V+N  GLR+  +EFVRHK LDA
Sbjct: 183 IARARTFGFMKDVEYLRSAGLALGGSLDNAIVL-DDDRVLNPEGLRFE-DEFVRHKILDA 240

Query: 250 IGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIV 291
           IGD+ L G+P+IG + + +  H +N+  L  L AD D++EIV
Sbjct: 241 IGDLYLLGHPIIGHFTAYKSGHALNNKLLRALLADPDAWEIV 282


>gnl|CDD|129425 TIGR00325, lpxC, UDP-3-0-acyl N-acetylglucosamine deacetylase.
           UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from
           E. coli, LpxC, was previously designated EnvA. This
           enzyme is involved in lipid-A precursor biosynthesis. It
           is essential for cell viability.
          Length = 297

 Score =  263 bits (674), Expect = 4e-71
 Identities = 110/282 (39%), Positives = 179/282 (63%), Gaps = 3/282 (1%)

Query: 10  QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
           Q TI  S+T+TG+G+HSG +  L L PA    G++F  T          A  ++V  T L
Sbjct: 3   QRTIKASVTVTGVGLHSGVKVTLTLRPAAANTGVVFYRTDLNPKVI-FPADPTSVRDTML 61

Query: 70  STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
            T +G+   ++ T+EHL+AAL A GIDN+ IE+++ E+PIMDGSA  F+ ++   GI+ L
Sbjct: 62  CTELGNEGARISTVEHLLAALAALGIDNLRIEVNAPEIPIMDGSALPFLYLLLDAGIREL 121

Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNE 189
            A ++++RI + VR+  G+ + EF P+   R + +I+F +  IG Q +  + +   F  +
Sbjct: 122 NAAKKFIRIKQPVRVEDGDKFVEFKPYNGFRLDFTIDFNHPAIGKQWYTMNFSAEAFATQ 181

Query: 190 IYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDA 249
           I  ARTFGF+ D+E  R AG   G SL+N++V+ +D +++N  GLR+  +EFVRHK LDA
Sbjct: 182 IARARTFGFMDDIEYLRSAGLIKGGSLDNAIVL-DDYRILNEDGLRFE-DEFVRHKMLDA 239

Query: 250 IGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIV 291
           IGD+++ G  +IG + + + SH++N+  L  + A ++++E+V
Sbjct: 240 IGDLSMLGKNIIGHFTAYKSSHKLNNKLLQAILATQEAWEVV 281


>gnl|CDD|183883 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine
           deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein]
           dehydratase; Reviewed.
          Length = 464

 Score =  227 bits (580), Expect = 3e-60
 Identities = 104/291 (35%), Positives = 151/291 (51%), Gaps = 30/291 (10%)

Query: 10  QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
           Q TI   +++ G+G+H+GK   +   PAPE  G  FK T   G    + A   NV+ T  
Sbjct: 5   QRTIKKEVSLQGVGLHTGKEVTITFKPAPENHGYKFKRTDLEG-QPIIDADVDNVVDTER 63

Query: 70  STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
            TT+  +  +V T+EH++AALY  GIDN +IE+D  E PIMDGS+K FVE IE  GI   
Sbjct: 64  GTTLEKNGVKVHTVEHVLAALYGLGIDNCLIELDGPEPPIMDGSSKPFVEAIEEAGIVEQ 123

Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEIS--IEFKNSIIGFQ-KWAGDLTQTVF 186
            A R Y  I +++     E+ +E        F I+  ++F + ++G Q     DL++  F
Sbjct: 124 DAPRNYYVIKETIEYHDEETGSEIIALPLDDFRITVMVDFDSKVLGSQHATLFDLSE--F 181

Query: 187 RNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISE---------------------- 224
           + EI  ARTF FL +VE   + G   G  L+N++VI +                      
Sbjct: 182 KKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAIVIVDKEMSQEELDKLAKKFGKDHISV 241

Query: 225 -DDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEIN 274
            ++ ++N+  LR+   E  RHK LD IGD+AL G P+ G   + R  H IN
Sbjct: 242 KENGILNNRPLRFP-NEPARHKLLDVIGDLALIGKPIKGRIIAARPGHAIN 291


>gnl|CDD|171888 PRK13187, PRK13187, UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase; Reviewed.
          Length = 304

 Score =  182 bits (463), Expect = 1e-46
 Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 32/305 (10%)

Query: 8   RLQHTIADSITITGIGIHSGKRANLKLCPAPEG---VGILFKCTQSGGITDSLSALWSNV 64
             Q T+A  +TI G G+H+G+R  +++ PA       GI+F+  + G    +L    +  
Sbjct: 9   TSQGTLARPLTIDGHGLHTGRRVGVRILPARPEDGVTGIVFRRVEQGRTLATLPVDPALR 68

Query: 65  LRTTLSTTI-GSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIER 123
               L T +  +    VRT+EHL+A+L A  ID+ I+E+D+ EVPI+DGSA  +V+ I  
Sbjct: 69  RAQPLCTMLRNADGVGVRTVEHLLASLLACEIDHAIVELDAEEVPILDGSATPWVDAIRA 128

Query: 124 IGIKTLTAKRRYLRIIKSVRITSGESWA--EFSPHCSMRFEISIEFKNSIIGF--QKWAG 179
            G   L A +R++R++++V +T GE     E     + R+E+S+  +N + GF    W G
Sbjct: 129 CGRVALDAPKRFIRVLRTVVVTDGEGEQRREMRIEPAPRYELSV--RNDLRGFGEMHWDG 186

Query: 180 DLTQTVFRNEIYAARTF------------GFLRDVERYRKAGCALGASLENSVVISEDDQ 227
            LT   F  EI  +R++            G+LR V   R A  +  AS+    V+     
Sbjct: 187 ALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTASIVGKRVL----- 241

Query: 228 VMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDS 287
               GG+R    EFVRH+ LD +GD+ALAG P++    + R SHE+N   +  L A+  +
Sbjct: 242 ----GGMRLPD-EFVRHRVLDLVGDLALAGAPLLARVSALRPSHEMNFRLVDALLAEPGA 296

Query: 288 YEIVD 292
           ++  +
Sbjct: 297 WQWAE 301


>gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit
           gamma; Validated.
          Length = 411

 Score = 29.4 bits (67), Expect = 1.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 79  QVRTIEHLMAALYAYGIDNVII 100
           Q +T EHLM AL   GI N++I
Sbjct: 124 QPQTKEHLM-ALDIIGIKNIVI 144


>gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional.
          Length = 427

 Score = 29.2 bits (66), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPH 156
             ++R  ++I+SVR   GE     SPH
Sbjct: 190 ALRQRLAQMIRSVR---GEYAPALSPH 213


>gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit
           gamma.  eIF-2 functions in the early steps of protein
           synthesis by forming a ternary complex with GTP and
           initiator tRNA.
          Length = 406

 Score = 28.1 bits (63), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 79  QVRTIEHLMAALYAYGIDNVII 100
           Q +T EHLM AL   GI N++I
Sbjct: 119 QPQTKEHLM-ALEIIGIKNIVI 139


>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase.
          Length = 359

 Score = 27.9 bits (62), Expect = 2.9
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 170 SIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAG--------CALGASLENSVV 221
           S IG +  AGD T   + ++     + GF  ++  YR A         CA G + EN+VV
Sbjct: 112 SFIGNESRAGD-TVISWNDKASDLDSNGF--ELGTYRTASVTIESDYFCATGITFENTVV 168

Query: 222 ISEDDQVMNHGGLRYSGEEFVRHK 245
                Q M    LR SG++   +K
Sbjct: 169 AEPGGQGMQAVALRISGDKAFFYK 192


>gnl|CDD|182031 PRK09694, PRK09694, helicase Cas3; Provisional.
          Length = 878

 Score = 27.5 bits (61), Expect = 4.0
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 58 SALW---SNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYG 94
          +  W   S VLR+  S     S  QVR       AL+  G
Sbjct: 38 ADCWWDQSPVLRSQFSANEMLSKQQVRAWLLFFVALHDIG 77


>gnl|CDD|161815 TIGR00318, cyaB, adenylyl cyclase CyaB, putative.  The protein CyaB
           from Aeromonas hydrophila is a second adenylyl cyclase
           from that species, as demonstrated by complementation in
           E. coli and by assay of the enzymatic properties of
           purified recombinant protein. It has no detectable
           homology to any other protein of known function, and has
           several unusual properties, including an optimal
           temperature of 65 degrees and an optimal pH of 9.5. A
           cluster of uncharaterized archaeal homologs may be
           orthologous and serve (under certain circumstances) to
           produce the regulatory metabolite cyclic AMP (cAMP).
          Length = 174

 Score = 26.7 bits (59), Expect = 6.7
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 14/61 (22%)

Query: 93  YGIDNVIIEIDST---------EVPIMDGSAKAFV-----EVIERIGIKTLTAKRRYLRI 138
           Y  + + + ID           E  I + + K        E+I ++GIK    +R YL +
Sbjct: 112 YQTNELNVSIDDVEGLGFFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLEL 171

Query: 139 I 139
           +
Sbjct: 172 L 172


>gnl|CDD|132282 TIGR03238, dnd_assoc_3, dnd system-associated protein 3.  cereus
           E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas
           haloplanktis TAC12, and Escherichia coli B7A.
          Length = 504

 Score = 26.8 bits (59), Expect = 7.3
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 95  IDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRITSGESWAEFS 154
           ID  II++    + + D     F  V+ R+G  T    R +LR    +RIT        +
Sbjct: 268 IDQFIIDLS---LNLPDQEFNEFKTVLNRLGCVTSNKGRSWLRPFYVLRIT------YLT 318

Query: 155 PHCSMRFEISIEFKNSII 172
               ++F  S +F++   
Sbjct: 319 NEYHVKF--SQDFEDQTY 334


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,806,725
Number of extensions: 306354
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 21
Length of query: 296
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 203
Effective length of database: 3,984,929
Effective search space: 808940587
Effective search space used: 808940587
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)