RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >gnl|CDD|183882 PRK13186, lpxC, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed. Length = 295 Score = 390 bits (1004), Expect = e-109 Identities = 131/282 (46%), Positives = 183/282 (64%), Gaps = 3/282 (1%) Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69 Q T+ +T TG+G+HSGK+ L L PAP GI+F+ T + + A NV T L Sbjct: 4 QRTLKKPVTATGVGLHSGKKVTLTLRPAPANTGIVFRRTDLPPPVE-IPARAENVGDTRL 62 Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129 TT+G+ +V T+EHLMAAL GIDN +IE+D EVPIMDGSA FV +I+ GI Sbjct: 63 CTTLGNGGVRVSTVEHLMAALAGLGIDNALIEVDGPEVPIMDGSAAPFVFLIQSAGIVEQ 122 Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNE 189 A ++++RI K VR+ G+ WAE P+ R + +I+F + IG Q ++ D + F E Sbjct: 123 NAPKKFIRIKKPVRVEDGDKWAELLPYDGFRLDFTIDFDHPAIGRQSYSLDFSPESFVRE 182 Query: 190 IYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDA 249 I ARTFGF++DVE R AG ALG SL+N++V+ +DD+V+N GLR+ +EFVRHK LDA Sbjct: 183 IARARTFGFMKDVEYLRSAGLALGGSLDNAIVL-DDDRVLNPEGLRFE-DEFVRHKILDA 240 Query: 250 IGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIV 291 IGD+ L G+P+IG + + + H +N+ L L AD D++EIV Sbjct: 241 IGDLYLLGHPIIGHFTAYKSGHALNNKLLRALLADPDAWEIV 282 >gnl|CDD|129425 TIGR00325, lpxC, UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli, LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability. Length = 297 Score = 263 bits (674), Expect = 4e-71 Identities = 110/282 (39%), Positives = 179/282 (63%), Gaps = 3/282 (1%) Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69 Q TI S+T+TG+G+HSG + L L PA G++F T A ++V T L Sbjct: 3 QRTIKASVTVTGVGLHSGVKVTLTLRPAAANTGVVFYRTDLNPKVI-FPADPTSVRDTML 61 Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129 T +G+ ++ T+EHL+AAL A GIDN+ IE+++ E+PIMDGSA F+ ++ GI+ L Sbjct: 62 CTELGNEGARISTVEHLLAALAALGIDNLRIEVNAPEIPIMDGSALPFLYLLLDAGIREL 121 Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNE 189 A ++++RI + VR+ G+ + EF P+ R + +I+F + IG Q + + + F + Sbjct: 122 NAAKKFIRIKQPVRVEDGDKFVEFKPYNGFRLDFTIDFNHPAIGKQWYTMNFSAEAFATQ 181 Query: 190 IYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDA 249 I ARTFGF+ D+E R AG G SL+N++V+ +D +++N GLR+ +EFVRHK LDA Sbjct: 182 IARARTFGFMDDIEYLRSAGLIKGGSLDNAIVL-DDYRILNEDGLRFE-DEFVRHKMLDA 239 Query: 250 IGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIV 291 IGD+++ G +IG + + + SH++N+ L + A ++++E+V Sbjct: 240 IGDLSMLGKNIIGHFTAYKSSHKLNNKLLQAILATQEAWEVV 281 >gnl|CDD|183883 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed. Length = 464 Score = 227 bits (580), Expect = 3e-60 Identities = 104/291 (35%), Positives = 151/291 (51%), Gaps = 30/291 (10%) Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69 Q TI +++ G+G+H+GK + PAPE G FK T G + A NV+ T Sbjct: 5 QRTIKKEVSLQGVGLHTGKEVTITFKPAPENHGYKFKRTDLEG-QPIIDADVDNVVDTER 63 Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129 TT+ + +V T+EH++AALY GIDN +IE+D E PIMDGS+K FVE IE GI Sbjct: 64 GTTLEKNGVKVHTVEHVLAALYGLGIDNCLIELDGPEPPIMDGSSKPFVEAIEEAGIVEQ 123 Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEIS--IEFKNSIIGFQ-KWAGDLTQTVF 186 A R Y I +++ E+ +E F I+ ++F + ++G Q DL++ F Sbjct: 124 DAPRNYYVIKETIEYHDEETGSEIIALPLDDFRITVMVDFDSKVLGSQHATLFDLSE--F 181 Query: 187 RNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISE---------------------- 224 + EI ARTF FL +VE + G G L+N++VI + Sbjct: 182 KKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAIVIVDKEMSQEELDKLAKKFGKDHISV 241 Query: 225 -DDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEIN 274 ++ ++N+ LR+ E RHK LD IGD+AL G P+ G + R H IN Sbjct: 242 KENGILNNRPLRFP-NEPARHKLLDVIGDLALIGKPIKGRIIAARPGHAIN 291 >gnl|CDD|171888 PRK13187, PRK13187, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed. Length = 304 Score = 182 bits (463), Expect = 1e-46 Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 32/305 (10%) Query: 8 RLQHTIADSITITGIGIHSGKRANLKLCPAPEG---VGILFKCTQSGGITDSLSALWSNV 64 Q T+A +TI G G+H+G+R +++ PA GI+F+ + G +L + Sbjct: 9 TSQGTLARPLTIDGHGLHTGRRVGVRILPARPEDGVTGIVFRRVEQGRTLATLPVDPALR 68 Query: 65 LRTTLSTTI-GSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIER 123 L T + + VRT+EHL+A+L A ID+ I+E+D+ EVPI+DGSA +V+ I Sbjct: 69 RAQPLCTMLRNADGVGVRTVEHLLASLLACEIDHAIVELDAEEVPILDGSATPWVDAIRA 128 Query: 124 IGIKTLTAKRRYLRIIKSVRITSGESWA--EFSPHCSMRFEISIEFKNSIIGF--QKWAG 179 G L A +R++R++++V +T GE E + R+E+S+ +N + GF W G Sbjct: 129 CGRVALDAPKRFIRVLRTVVVTDGEGEQRREMRIEPAPRYELSV--RNDLRGFGEMHWDG 186 Query: 180 DLTQTVFRNEIYAARTF------------GFLRDVERYRKAGCALGASLENSVVISEDDQ 227 LT F EI +R++ G+LR V R A + AS+ V+ Sbjct: 187 ALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTASIVGKRVL----- 241 Query: 228 VMNHGGLRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDS 287 GG+R EFVRH+ LD +GD+ALAG P++ + R SHE+N + L A+ + Sbjct: 242 ----GGMRLPD-EFVRHRVLDLVGDLALAGAPLLARVSALRPSHEMNFRLVDALLAEPGA 296 Query: 288 YEIVD 292 ++ + Sbjct: 297 WQWAE 301 >gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated. Length = 411 Score = 29.4 bits (67), Expect = 1.0 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 79 QVRTIEHLMAALYAYGIDNVII 100 Q +T EHLM AL GI N++I Sbjct: 124 QPQTKEHLM-ALDIIGIKNIVI 144 >gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional. Length = 427 Score = 29.2 bits (66), Expect = 1.4 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%) Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPH 156 ++R ++I+SVR GE SPH Sbjct: 190 ALRQRLAQMIRSVR---GEYAPALSPH 213 >gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 Score = 28.1 bits (63), Expect = 2.6 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 79 QVRTIEHLMAALYAYGIDNVII 100 Q +T EHLM AL GI N++I Sbjct: 119 QPQTKEHLM-ALEIIGIKNIVI 139 >gnl|CDD|178276 PLN02671, PLN02671, pectinesterase. Length = 359 Score = 27.9 bits (62), Expect = 2.9 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 11/84 (13%) Query: 170 SIIGFQKWAGDLTQTVFRNEIYAARTFGFLRDVERYRKAG--------CALGASLENSVV 221 S IG + AGD T + ++ + GF ++ YR A CA G + EN+VV Sbjct: 112 SFIGNESRAGD-TVISWNDKASDLDSNGF--ELGTYRTASVTIESDYFCATGITFENTVV 168 Query: 222 ISEDDQVMNHGGLRYSGEEFVRHK 245 Q M LR SG++ +K Sbjct: 169 AEPGGQGMQAVALRISGDKAFFYK 192 >gnl|CDD|182031 PRK09694, PRK09694, helicase Cas3; Provisional. Length = 878 Score = 27.5 bits (61), Expect = 4.0 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 3/40 (7%) Query: 58 SALW---SNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYG 94 + W S VLR+ S S QVR AL+ G Sbjct: 38 ADCWWDQSPVLRSQFSANEMLSKQQVRAWLLFFVALHDIG 77 >gnl|CDD|161815 TIGR00318, cyaB, adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP). Length = 174 Score = 26.7 bits (59), Expect = 6.7 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 14/61 (22%) Query: 93 YGIDNVIIEIDST---------EVPIMDGSAKAFV-----EVIERIGIKTLTAKRRYLRI 138 Y + + + ID E I + + K E+I ++GIK +R YL + Sbjct: 112 YQTNELNVSIDDVEGLGFFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLEL 171 Query: 139 I 139 + Sbjct: 172 L 172 >gnl|CDD|132282 TIGR03238, dnd_assoc_3, dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. Length = 504 Score = 26.8 bits (59), Expect = 7.3 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%) Query: 95 IDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRITSGESWAEFS 154 ID II++ + + D F V+ R+G T R +LR +RIT + Sbjct: 268 IDQFIIDLS---LNLPDQEFNEFKTVLNRLGCVTSNKGRSWLRPFYVLRIT------YLT 318 Query: 155 PHCSMRFEISIEFKNSII 172 ++F S +F++ Sbjct: 319 NEYHVKF--SQDFEDQTY 334 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.137 0.404 Gapped Lambda K H 0.267 0.0704 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,806,725 Number of extensions: 306354 Number of successful extensions: 548 Number of sequences better than 10.0: 1 Number of HSP's gapped: 536 Number of HSP's successfully gapped: 21 Length of query: 296 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 203 Effective length of database: 3,984,929 Effective search space: 808940587 Effective search space used: 808940587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.8 bits)