RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} (A:1-125,A:182-189,A:229-248) Length = 153 Score = 158 bits (401), Expect = 8e-40 Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 1/123 (0%) Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69 Q T+ + I TG+G+HSG++ L L PAP GI+F T + + + A NV TT+ Sbjct: 4 QRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVE-IPARAENVGETTM 62 Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129 STT+ +V T+EHL++A+ GIDN +E+ ++EVPIMDGSA FV +I+ G++ Sbjct: 63 STTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQ 122 Query: 130 TAK 132 A Sbjct: 123 EAA 125 Score = 27.0 bits (60), Expect = 2.8 Identities = 12/17 (70%), Positives = 15/17 (88%) Query: 239 EEFVRHKTLDAIGDIAL 255 +EFV+HK LDAIGD+ L Sbjct: 137 DEFVKHKILDAIGDLYL 153 >1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:1-119) Length = 119 Score = 148 bits (376), Expect = 7e-37 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTT 68 L+ T+ + ++ G+GIH+G+ + L + P EG GI F + A V+ T Sbjct: 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGV-----YIPARHEFVVHTN 56 Query: 69 LSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIK 127 ST +G +++T+EH+++ L+ I NV IE+ E+PI+DGS F E I + + Sbjct: 57 HSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILN 115 >1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:120-177,A:217-270) Length = 112 Score = 76.1 bits (187), Expect = 5e-15 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 235 RYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSY 288 RY E VRHK D IGD+ L G PV G + S RG H +N + L + Sbjct: 59 RYE-NEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLT 111 >1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:178-216) Length = 39 Score = 61.5 bits (150), Expect = 1e-10 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGL 234 TF F ++E +K G G SL+N++V+ D+V N GL Sbjct: 1 TFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGL 39 >2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} (A:190-228) Length = 39 Score = 61.5 bits (150), Expect = 1e-10 Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGL 234 TFGF+RD+E R ALG S+EN++V+ +++V+N GL Sbjct: 1 TFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGL 39 >2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} (A:126-181,A:249-299) Length = 107 Score = 59.3 bits (144), Expect = 5e-10 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 133 RRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIG--FQKWAGDLTQTVF 186 ++++RI + V + G+ A F P + I+F + + Q+ + D + T F Sbjct: 1 KKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSF 56 Score = 56.6 bits (137), Expect = 4e-09 Identities = 15/37 (40%), Positives = 23/37 (62%) Query: 256 AGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVD 292 G +IG +R + H +N+ L TL ADKD++E+V Sbjct: 57 LGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVT 93 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:234-256,A:435-732) Length = 321 Score = 26.9 bits (58), Expect = 3.5 Identities = 8/48 (16%), Positives = 18/48 (37%) Query: 84 EHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTA 131 + +A + I T + + E IE++G++T + Sbjct: 241 NRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQ 288 >3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (C:39-170) Length = 132 Score = 26.4 bits (58), Expect = 5.1 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 10/73 (13%) Query: 95 IDNVIIEIDSTEVPIMDGSAKAFVEVI-ERIGIKTLTAKRRYLRIIKSVRITSGESWAEF 153 ID V I ++++ + D E + R+G+ L + + T ++ Sbjct: 7 IDLVEINVNTS--VMPD-------EFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQY 57 Query: 154 SPHCSMRFEISIE 166 P CS+ ++ + Sbjct: 58 CPKCSVELFLNAK 70 >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} (A:1-142,A:312-344) Length = 175 Score = 25.6 bits (55), Expect = 8.2 Identities = 7/50 (14%), Positives = 16/50 (32%) Query: 47 CTQSGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGID 96 + + + R L + + + +V IE AA ++ Sbjct: 93 LFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPXAAAIGSNLN 142 >2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A (A:1-139) Length = 139 Score = 25.5 bits (56), Expect = 8.8 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 8/52 (15%) Query: 66 RTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEID---STEVPIMDGSA 114 R + ++ M AL G+ I+ D + P + A Sbjct: 87 RPEMKGVNV-----TDLVQQRMFALGTVGLTTCEIKFDIDEAAAGPKLSAIA 133 >2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} (A:32-268) Length = 237 Score = 25.2 bits (55), Expect = 9.7 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 14/84 (16%) Query: 198 FLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLDAIGDIALAG 257 L + C G L N+G L+ E+ RH +D + L G Sbjct: 111 ALHSSPLGPQTHCVHGCGL------------WNNGRLQVYHEDVGRHNAVDKVLGSILLG 158 Query: 258 YPVIGC--YRSCRGSHEINHMALC 279 Y + R + ++ Sbjct: 159 RASNNSAVYTTGRLTSDMVLKCAR 182 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.137 0.404 Gapped Lambda K H 0.267 0.0653 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,282,931 Number of extensions: 102100 Number of successful extensions: 243 Number of sequences better than 10.0: 1 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 17 Length of query: 296 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 208 Effective length of database: 1,981,209 Effective search space: 412091472 Effective search space used: 412091472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (24.7 bits)