RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} SCOP: d.14.1.7 d.14.1.7 PDB: 1yh8_A* 1yhc_A* 2j65_A* 2ies_A* 2ier_A* 2o3z_A* 2jt2_A* 1xxe_A* 2go3_A* 2go4_A* Length = 270 Score = 257 bits (658), Expect = 2e-69 Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 12/280 (4%) Query: 9 LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTT 68 L+ T+ + ++ G+GIH+G+ + L + P EG GI F + A V+ T Sbjct: 2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNG-----VYIPARHEFVVHTN 56 Query: 69 LSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKT 128 ST +G +++T+EH+++ L+ I NV IE+ E+PI+DGS F E I + I Sbjct: 57 HSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKN-ILN 115 Query: 129 LTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRN 188 + Y + + + + + P ++ EFKN +G QK+ Sbjct: 116 QNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFVEG---NEE 171 Query: 189 EIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLD 248 EI ARTF F ++E +K G G SL+N++V+ D+V N GLRY E VRHK D Sbjct: 172 EIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYE-NEPVRHKVFD 229 Query: 249 AIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSY 288 IGD+ L G PV G + S RG H +N + L + Sbjct: 230 LIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLT 269 >2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC, hydrolase, BB-78485, antibiotics, lipid synthesis, metalloprotease; HET: GVR; 1.90A {Pseudomonas aeruginosa} Length = 299 Score = 229 bits (584), Expect = 8e-61 Identities = 115/285 (40%), Positives = 176/285 (61%), Gaps = 5/285 (1%) Query: 10 QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69 Q T+ + I TG+G+HSG++ L L PAP GI+F T + + + A NV TT+ Sbjct: 4 QRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVE-IPARAENVGETTM 62 Query: 70 STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129 STT+ +V T+EHL++A+ GIDN +E+ ++EVPIMDGSA FV +I+ G++ Sbjct: 63 STTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQ 122 Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIG--FQKWAGDLTQTVFR 187 A ++++RI + V + G+ A F P + I+F + + Q+ + D + T F Sbjct: 123 EAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFV 182 Query: 188 NEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTL 247 E+ ARTFGF+RD+E R ALG S+EN++V+ +++V+N GLRY +EFV+HK L Sbjct: 183 KEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGLRYE-DEFVKHKIL 240 Query: 248 DAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVD 292 DAIGD+ L G +IG +R + H +N+ L TL ADKD++E+V Sbjct: 241 DAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVT 285 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.5 bits (97), Expect = 2e-04 Identities = 55/341 (16%), Positives = 99/341 (29%), Gaps = 136/341 (39%) Query: 11 HTIADSIT-ITGIGIHSGK---RANLKLC-----PAPEGVG-ILFKCTQSG--------- 51 H +A + + K + + P + LF+ G Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161 Query: 52 --GITDS----LSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAA------LYAYGIDNVI 99 G TD L L+ + I S+ T+ L+ ++ G++ ++ Sbjct: 162 GQGNTDDYFEELRDLY-QTYHVLVGDLIKFSA---ETLSELIRTTLDAEKVFTQGLN-IL 216 Query: 100 --IEIDSTEVPIMDGSAKAFVEV-IERIGIKTL-----TAK---------RRYLR----- 137 +E + + P D + + IG+ L TAK R YL+ Sbjct: 217 EWLE-NPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273 Query: 138 ---IIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAAR 194 ++ +V I +SW F S+R I++ F + G R Sbjct: 274 SQGLVTAVAIAETDSWESF--FVSVRKAITVLF---------FIG------VRCYEAYPN 316 Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHG-----------GLRYSG-EEFV 242 T SL S++ ED + + L +++V Sbjct: 317 T-------------------SLPPSIL--EDS--LENNEGVPSPMLSISNLTQEQVQDYV 353 Query: 243 RH--KTL---DAIGDIAL---------AGYPVIGCYRSCRG 269 L + I+L +G P +S G Sbjct: 354 NKTNSHLPAGKQVE-ISLVNGAKNLVVSGPP-----QSLYG 388 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 34.6 bits (78), Expect = 0.027 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 11/39 (28%) Query: 81 RTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVE 119 + ++ L A+L Y D DS P + + KA +E Sbjct: 20 QALKKLQASLKLYA-D------DSA--PAL--AIKATME 47 >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 Score = 26.9 bits (58), Expect = 5.8 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 8/80 (10%) Query: 86 LMAA--LYAYGIDNVIIEIDSTEVPIMDGSAKAF----VEVIERIGIKTLTAKRRYLRII 139 L+ L+ GIDNVI+E + + + A V+++ G+ R + Sbjct: 15 LLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGV--DRRMARDGLVH 72 Query: 140 KSVRITSGESWAEFSPHCSM 159 + V I Sbjct: 73 EGVEIAFAGQRRRIDLKRLS 92 >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Length = 511 Score = 26.9 bits (58), Expect = 5.9 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 21/84 (25%) Query: 86 LMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRIT 145 + A + ID ++E S V +G T + R + + Sbjct: 20 YLKAAFDDRIDVTLVE--SGNVRR------------IGVGEATFSTVRHFFDYL------ 59 Query: 146 SGESWAEFSPHCSMRFEISIEFKN 169 G E+ P C+ +++ I F+N Sbjct: 60 -GLDEREWLPRCAGGYKLGIRFEN 82 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.404 Gapped Lambda K H 0.267 0.0698 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,593,590 Number of extensions: 119842 Number of successful extensions: 310 Number of sequences better than 10.0: 1 Number of HSP's gapped: 302 Number of HSP's successfully gapped: 10 Length of query: 296 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 204 Effective length of database: 3,462,782 Effective search space: 706407528 Effective search space used: 706407528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.4 bits)