RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus
str. psy62]
         (296 letters)



>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;
           alpha+beta fold, hydrophobic tunnel, hydrolase; HET:
           MYR; 2.00A {Aquifex aeolicus} SCOP: d.14.1.7 d.14.1.7
           PDB: 1yh8_A* 1yhc_A* 2j65_A* 2ies_A* 2ier_A* 2o3z_A*
           2jt2_A* 1xxe_A* 2go3_A* 2go4_A*
          Length = 270

 Score =  257 bits (658), Expect = 2e-69
 Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 12/280 (4%)

Query: 9   LQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTT 68
           L+ T+ + ++  G+GIH+G+ + L + P  EG GI F           + A    V+ T 
Sbjct: 2   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNG-----VYIPARHEFVVHTN 56

Query: 69  LSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKT 128
            ST +G    +++T+EH+++ L+   I NV IE+   E+PI+DGS   F E I +  I  
Sbjct: 57  HSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKN-ILN 115

Query: 129 LTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRN 188
              +  Y  + + + +       +  P  ++      EFKN  +G QK+           
Sbjct: 116 QNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKN-FLGRQKFTFVEG---NEE 171

Query: 189 EIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTLD 248
           EI  ARTF F  ++E  +K G   G SL+N++V+   D+V N  GLRY   E VRHK  D
Sbjct: 172 EIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYE-NEPVRHKVFD 229

Query: 249 AIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSY 288
            IGD+ L G PV G + S RG H +N   +  L   +   
Sbjct: 230 LIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLT 269


>2ves_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LPXC,
           hydrolase, BB-78485, antibiotics, lipid synthesis,
           metalloprotease; HET: GVR; 1.90A {Pseudomonas
           aeruginosa}
          Length = 299

 Score =  229 bits (584), Expect = 8e-61
 Identities = 115/285 (40%), Positives = 176/285 (61%), Gaps = 5/285 (1%)

Query: 10  QHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSALWSNVLRTTL 69
           Q T+ + I  TG+G+HSG++  L L PAP   GI+F  T    + + + A   NV  TT+
Sbjct: 4   QRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVE-IPARAENVGETTM 62

Query: 70  STTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTL 129
           STT+     +V T+EHL++A+   GIDN  +E+ ++EVPIMDGSA  FV +I+  G++  
Sbjct: 63  STTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQ 122

Query: 130 TAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIG--FQKWAGDLTQTVFR 187
            A ++++RI + V +  G+  A F P    +    I+F + +     Q+ + D + T F 
Sbjct: 123 EAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFV 182

Query: 188 NEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEEFVRHKTL 247
            E+  ARTFGF+RD+E  R    ALG S+EN++V+  +++V+N  GLRY  +EFV+HK L
Sbjct: 183 KEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGLRYE-DEFVKHKIL 240

Query: 248 DAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVD 292
           DAIGD+ L G  +IG +R  +  H +N+  L TL ADKD++E+V 
Sbjct: 241 DAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVT 285


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 55/341 (16%), Positives = 99/341 (29%), Gaps = 136/341 (39%)

Query: 11  HTIADSIT-ITGIGIHSGK---RANLKLC-----PAPEGVG-ILFKCTQSG--------- 51
           H +A  +       +   K   +  +        P  +     LF+    G         
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161

Query: 52  --GITDS----LSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAA------LYAYGIDNVI 99
             G TD     L  L+       +   I  S+    T+  L+        ++  G++ ++
Sbjct: 162 GQGNTDDYFEELRDLY-QTYHVLVGDLIKFSA---ETLSELIRTTLDAEKVFTQGLN-IL 216

Query: 100 --IEIDSTEVPIMDGSAKAFVEV-IERIGIKTL-----TAK---------RRYLR----- 137
             +E + +  P  D      +   +  IG+  L     TAK         R YL+     
Sbjct: 217 EWLE-NPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273

Query: 138 ---IIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGDLTQTVFRNEIYAAR 194
              ++ +V I   +SW  F    S+R  I++ F         + G       R       
Sbjct: 274 SQGLVTAVAIAETDSWESF--FVSVRKAITVLF---------FIG------VRCYEAYPN 316

Query: 195 TFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHG-----------GLRYSG-EEFV 242
           T                   SL  S++  ED   + +             L     +++V
Sbjct: 317 T-------------------SLPPSIL--EDS--LENNEGVPSPMLSISNLTQEQVQDYV 353

Query: 243 RH--KTL---DAIGDIAL---------AGYPVIGCYRSCRG 269
                 L     +  I+L         +G P     +S  G
Sbjct: 354 NKTNSHLPAGKQVE-ISLVNGAKNLVVSGPP-----QSLYG 388


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.6 bits (78), Expect = 0.027
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 11/39 (28%)

Query: 81  RTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVE 119
           + ++ L A+L  Y  D      DS   P +  + KA +E
Sbjct: 20  QALKKLQASLKLYA-D------DSA--PAL--AIKATME 47


>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure,
           P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas
           aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A*
           1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A*
           1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A*
           1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
          Length = 394

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 86  LMAA--LYAYGIDNVIIEIDSTEVPIMDGSAKAF----VEVIERIGIKTLTAKRRYLRII 139
           L+    L+  GIDNVI+E  + +  +    A       V+++   G+       R   + 
Sbjct: 15  LLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGV--DRRMARDGLVH 72

Query: 140 KSVRITSGESWAEFSPHCSM 159
           + V I               
Sbjct: 73  EGVEIAFAGQRRRIDLKRLS 92


>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET:
           TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
           2wes_A*
          Length = 511

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 21/84 (25%)

Query: 86  LMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEVIERIGIKTLTAKRRYLRIIKSVRIT 145
            + A +   ID  ++E  S  V                +G  T +  R +   +      
Sbjct: 20  YLKAAFDDRIDVTLVE--SGNVRR------------IGVGEATFSTVRHFFDYL------ 59

Query: 146 SGESWAEFSPHCSMRFEISIEFKN 169
            G    E+ P C+  +++ I F+N
Sbjct: 60  -GLDEREWLPRCAGGYKLGIRFEN 82


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0698    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,593,590
Number of extensions: 119842
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 10
Length of query: 296
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 204
Effective length of database: 3,462,782
Effective search space: 706407528
Effective search space used: 706407528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)