BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 610 bits (1573), Expect = e-177, Method: Compositional matrix adjust. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 1 MEMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSAL 60 MEMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSAL Sbjct: 1 MEMLQIGRLQHTIADSITITGIGIHSGKRANLKLCPAPEGVGILFKCTQSGGITDSLSAL 60 Query: 61 WSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV 120 WSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV Sbjct: 61 WSNVLRTTLSTTIGSSSCQVRTIEHLMAALYAYGIDNVIIEIDSTEVPIMDGSAKAFVEV 120 Query: 121 IERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGD 180 IERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGD Sbjct: 121 IERIGIKTLTAKRRYLRIIKSVRITSGESWAEFSPHCSMRFEISIEFKNSIIGFQKWAGD 180 Query: 181 LTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEE 240 LTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEE Sbjct: 181 LTQTVFRNEIYAARTFGFLRDVERYRKAGCALGASLENSVVISEDDQVMNHGGLRYSGEE 240 Query: 241 FVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVDDHGA 296 FVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVDDHGA Sbjct: 241 FVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYEIVDDHGA 296 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 29.6 bits (65), Expect = 0.064, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 19/43 (44%) Query: 50 SGGITDSLSALWSNVLRTTLSTTIGSSSCQVRTIEHLMAALYA 92 S +TD L + N L+ + + S TIEH A YA Sbjct: 184 SATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYA 226 >gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 24.3 bits (51), Expect = 2.9, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%) Query: 37 APEGVGILFKCTQSGG----ITDSLSALWS 62 PEG +L KCT S G + DS L S Sbjct: 350 PPEGQDLLRKCTDSSGQFFAVNDSRELLES 379 >gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 24.3 bits (51), Expect = 2.9, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 245 KTLDAIGDIALAGYPVIGCYRSCRG-SHEINHMALCT 280 +TL+ I +AGYP I +RS H I +A+ T Sbjct: 344 ETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVAT 380 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 24.3 bits (51), Expect = 2.9, Method: Compositional matrix adjust. Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 228 VMNHGGLRYSGEEFVRHKTLDAIGDIALAG 257 V +HG L Y+ F+ ++ DI +AG Sbjct: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 >gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62] Length = 163 Score = 23.5 bits (49), Expect = 4.2, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 2 EMLQIGRLQHTIADSITITGIGI 24 + L IG + H +AD +T TGI + Sbjct: 104 DALIIGYVSHLVADVLTPTGIPL 126 >537021.9.peg.410_1 Length = 952 Score = 22.7 bits (47), Expect = 8.3, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 234 LRYSGEEFVRHKTLDAIGDIALAGYPVIGCYRSCRGSHEINHMALCTLFADKDSYE-IVD 292 +RY ++ + H +D + D +L + VI + H + TLFA D + I Sbjct: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 Query: 293 DHGA 296 HGA Sbjct: 229 FHGA 232 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,447 Number of Sequences: 1233 Number of extensions: 7077 Number of successful extensions: 20 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 8 length of query: 296 length of database: 328,796 effective HSP length: 73 effective length of query: 223 effective length of database: 238,787 effective search space: 53249501 effective search space used: 53249501 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)