HHsearch alignment for GI: 254781176 and conserved domain: TIGR03471

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

Probab=90.67  E-value=0.84  Score=25.23  Aligned_cols=149  Identities=21%  Similarity=0.227  Sum_probs=86.0

Q ss_pred             EEEEECCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99950430004067-88889999999998633354502788874136653189--9974467999999888887651665
Q gi|254781176|r  132 VGVVTKPFHFEGSR-RMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFA--DAFSMADQVLYSGVSCITDLMIKEG  208 (502)
Q Consensus       132 ~~~v~~pf~~eg~~-r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~--~af~~~d~~l~~~v~~i~~~i~~~g  208 (502)
T Consensus       210 C~FC~~p~~~~Gr~~R~RSpe~VvdEIe~l~~~y---~gv~~~~f~DD~Ft~~~~r~~eic~~i~~l~i~W-----~~~~  281 (472)
T TIGR03471       210 CTFCLWPQTVGGHRYRTRSAESVIEEVKYALENF---PEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTW-----SCNA  281 (472)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEE-----EEEE
T ss_conf             9687882102688662159999999999999866---8975899947766789999999999998769827-----8763


Q ss_pred             CCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC--EEEE---EEECCCCCCHHHHHHHH
Q ss_conf             555898787876415865899876148620489999887527010002245553--7899---96168888999999999
Q gi|254781176|r  209 LINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQ--GLLI---SITGGSDLTLFEVDEAA  283 (502)
Q Consensus       209 ~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~--~~l~---~i~~~~~~~l~e~~~~~  283 (502)
T Consensus       282 Rv~~d~E-~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~-~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~Ti  359 (472)
T TIGR03471       282 RANVDYE-TLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIA-RRFTRDCHKLGIKVHGTFILGLPGETRETIRKTI  359 (472)
T ss_pred             ECCCCHH-HHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHH-HHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHH
T ss_conf             0348999-9999998398489980375899999985389989999-9999988757987999998779999889999999


Q ss_pred             HHHHHHC
Q ss_conf             9999741
Q gi|254781176|r  284 TRIREEV  290 (502)
Q Consensus       284 ~~i~~~~  290 (502)
T Consensus       360 ~fa~~l~  366 (472)
T TIGR03471       360 DFAKELN  366 (472)
T ss_pred             HHHHHCC
T ss_conf             9999759