HHsearch alignment for GI: 254781176 and conserved domain: cd02187
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.22 E-value=1.6e-10 Score=97.14 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=151.5
Q ss_pred EEEEEECCCHHHHHHHHHH-----CCCC----------------C------------CEEEEECCCHHHHHHCCCCE-EE
Q ss_conf 7999966814799999998-----5899----------------8------------44999825578855189970-48
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS-----SGLQ----------------G------------VNFVVANTDAQALMMSKAKQ-II 62 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~-----~~~~----------------~------------~~~~~~ntd~~~l~~~~~~~-~~ 62 (502)
T Consensus 3 IItiqvGQcGnQIG~~~W~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vI~~i~~~~~~~ 82 (425)
T cd02187 3 IVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQ 82 (425)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCEEEEECCHHHHHHHHCCCCCC
T ss_conf 89997268599999999999999838898988778753000014540566799977146799988754898986487646
Q ss_pred EECC--CCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--CCE
Q ss_conf 5155--425567888883899-----99999729999997269989---99980367666740789999999864--984
Q gi|254781176|r 63 QLGS--GITEGLGAGSHPEVG-----RAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--GVL 130 (502)
Q Consensus 63 ~~g~--~~~~g~g~g~~~~~g-----~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~~~ 130 (502)
T Consensus 83 lf~~~n~i~~~~gagNNwa~Gy~~~G~~~~d~i~d~Irk~~E~cD~l~gf~i~~Sl~GGTGSGlGs~lle~L~d~yp~~~ 162 (425)
T cd02187 83 LFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 162 (425)
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 64876466668872022135000346888999999999999848986756899865887765188999999986637353
Q ss_pred EEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999504300--0406788889999999998633354502788874136653189-997446799999988888765166
Q gi|254781176|r 131 TVGVVTKPFH--FEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFA-DAFSMADQVLYSGVSCITDLMIKE 207 (502)
Q Consensus 131 ~~~~v~~pf~--~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~-~af~~~d~~l~~~v~~i~~~i~~~ 207 (502)
T Consensus 163 ~~~~~V~P~~~~~~~vvq~YNsvLsl~~L~e~~d~~~~fdN~aL~~i~~~~l~~~~~~~~~~N~vIa~~ls~~t~~~Rf~ 242 (425)
T cd02187 163 MATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLRFP 242 (425)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77779846887788601133657667888850876999443999999998638999997999999999861354446687
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 55558987878764
Q gi|254781176|r 208 GLINLDFADVRSVM 221 (502)
Q Consensus 208 g~in~df~d~~~v~ 221 (502)
T Consensus 243 g~ln~~l~~l~~nL 256 (425)
T cd02187 243 GQLNSDLRKLAVNM 256 (425)
T ss_pred CCCCCCHHHHHHCC
T ss_conf 54465789996337